Wall clock time and date at job start Tue Mar 31 2020 16:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34779 * 120.00094 * 2 1 4 4 O 1.21286 * 120.00040 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00201 * 0.02562 * 3 2 1 6 6 C 1.52992 * 109.47592 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 3 8 8 F 1.39901 * 109.47234 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00034 * 180.02562 * 2 1 3 10 10 H 1.09006 * 110.88811 * 179.29939 * 9 2 1 11 11 C 1.55160 * 111.00483 * 303.17870 * 9 2 1 12 12 C 1.54317 * 102.94501 * 153.57804 * 11 9 2 13 13 N 1.47025 * 107.27143 * 337.80446 * 12 11 9 14 14 C 1.34775 * 125.64915 * 178.89837 * 13 12 11 15 15 O 1.21279 * 119.99757 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00013 * 0.03488 * 14 13 12 17 17 S 1.81003 * 109.47261 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99895 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00248 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99615 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99891 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46848 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47179 * 119.99743 * 22 20 18 25 25 H 1.48499 * 109.47091 * 240.00296 * 22 20 18 26 26 C 1.47472 * 108.72013 * 358.98028 * 13 12 11 27 27 H 1.08999 * 109.47474 * 89.99882 * 1 2 3 28 28 H 1.08996 * 109.47479 * 209.99941 * 1 2 3 29 29 H 1.09007 * 109.47434 * 329.99800 * 1 2 3 30 30 H 1.09002 * 109.47210 * 59.99599 * 5 3 2 31 31 H 1.09001 * 109.46665 * 299.99857 * 5 3 2 32 32 H 1.09002 * 109.47103 * 59.99616 * 6 5 3 33 33 H 1.08998 * 109.46862 * 300.00428 * 6 5 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 35 35 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 36 36 H 1.09007 * 110.71532 * 271.94157 * 11 9 2 37 37 H 1.09004 * 110.71897 * 35.21059 * 11 9 2 38 38 H 1.08993 * 109.88606 * 97.22440 * 12 11 9 39 39 H 1.09005 * 109.88192 * 218.39406 * 12 11 9 40 40 H 1.09005 * 109.47027 * 299.99384 * 16 14 13 41 41 H 1.09004 * 109.47497 * 59.99317 * 16 14 13 42 42 H 0.97004 * 120.00010 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.34560 * 265.25145 * 26 13 12 44 44 H 1.08995 * 110.40326 * 142.91350 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6146 4.9602 0.0011 8 9 2.5237 6.0236 0.0009 9 6 2.1974 -1.2687 -0.0006 10 1 3.2737 -1.0961 -0.0129 11 6 1.7890 -2.1473 1.2114 12 6 2.0704 -3.5795 0.7106 13 7 2.0611 -3.5378 -0.7591 14 6 2.2880 -4.5853 -1.5761 15 8 2.2555 -4.4343 -2.7790 16 6 2.5819 -5.9443 -0.9950 17 16 2.8385 -7.1317 -2.3368 18 6 3.1547 -8.5895 -1.3990 19 1 3.1469 -8.5496 -0.3198 20 6 3.4147 -9.7889 -2.0473 21 7 3.4256 -9.8372 -3.3627 22 14 3.7492 -11.3347 -1.0532 23 1 3.6802 -11.0159 0.3956 24 1 2.7318 -12.3650 -1.3828 25 1 5.1019 -11.8516 -1.3819 26 6 1.7642 -2.1595 -1.1915 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 0.7590 2.5299 0.8908 31 1 0.7584 2.5302 -0.8892 32 1 3.0063 3.5779 -0.8889 33 1 3.0062 3.5770 0.8910 34 1 0.9876 5.0179 0.8908 35 1 0.9883 5.0181 -0.8892 36 1 2.4041 -1.9149 2.0808 37 1 0.7311 -2.0198 1.4410 38 1 3.0459 -3.9115 1.0658 39 1 1.2937 -4.2562 1.0670 40 1 3.4807 -5.8901 -0.3806 41 1 1.7410 -6.2666 -0.3809 42 1 3.6070 -10.6755 -3.8158 43 1 0.6975 -2.0439 -1.3833 44 1 2.3401 -1.9084 -2.0822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001743095184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:55 Heat of formation + Delta-G solvation = -149.040069 kcal Electronic energy + Delta-G solvation = -25543.026893 eV Core-core repulsion = 21534.831332 eV Total energy + Delta-G solvation = -4008.195561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.53348 -41.58462 -40.61660 -38.63643 -36.18402 -35.02428 -34.59997 -32.53943 -30.90721 -29.70535 -28.15891 -27.76527 -27.42688 -24.59851 -23.32026 -21.92055 -20.80124 -20.11274 -19.60620 -18.53092 -18.17886 -17.51950 -17.45878 -16.90987 -16.87737 -16.62370 -16.44449 -16.26089 -15.69675 -15.63993 -15.34272 -14.74621 -14.66289 -14.54665 -14.34056 -14.12719 -13.81300 -13.76532 -13.44248 -13.28594 -13.16581 -12.92286 -12.84638 -12.65061 -12.59746 -12.58597 -12.34391 -11.99314 -11.76354 -11.72022 -11.52365 -11.16994 -11.07701 -10.90810 -10.29981 -9.92645 -9.62756 -8.70066 -8.36040 -6.15023 1.18521 1.41052 1.41223 1.48884 1.54857 1.56952 1.76981 2.18616 2.25925 2.98384 3.18628 3.34190 3.43348 3.55702 3.73828 3.86376 3.89800 3.89895 4.10106 4.13840 4.15991 4.23791 4.29550 4.34958 4.42068 4.43636 4.54881 4.62257 4.70031 4.73143 4.76663 4.80173 4.90304 5.00948 5.03291 5.10193 5.18081 5.28620 5.40926 5.48807 6.18773 6.28015 6.33034 7.03365 7.05270 7.11119 8.73566 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.001807 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.572606 B =15494.597572 C =15670.033477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.603 5.603 3 C 0.506 3.494 4 O -0.591 6.591 5 C -0.125 4.125 6 C -0.140 4.140 7 C 0.059 3.941 8 F -0.243 7.243 9 C 0.132 3.868 10 H 0.088 0.912 11 C -0.123 4.123 12 C 0.092 3.908 13 N -0.616 5.616 14 C 0.547 3.453 15 O -0.567 6.567 16 C -0.119 4.119 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.275 1.275 26 C 0.101 3.899 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.271 0.729 43 H 0.088 0.912 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 26.992 15.658 33.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.335 5.335 3 C 0.297 3.703 4 O -0.471 6.471 5 C -0.164 4.164 6 C -0.178 4.178 7 C 0.005 3.995 8 F -0.224 7.224 9 C 0.026 3.974 10 H 0.107 0.893 11 C -0.161 4.161 12 C -0.030 4.030 13 N -0.352 5.352 14 C 0.336 3.664 15 O -0.445 6.445 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.023 4.023 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.502 27.096 13.702 32.469 hybrid contribution 0.804 -1.354 1.081 1.910 sum -10.697 25.742 14.783 31.554 Atomic orbital electron populations 1.22244 0.76419 1.05897 1.03587 1.47792 1.08644 1.04160 1.72868 1.21482 0.87678 0.86724 0.74409 1.90728 1.16657 1.88021 1.51662 1.21624 0.98684 0.88290 1.07818 1.21878 0.98732 0.93924 1.03312 1.22241 0.89787 0.81461 1.06052 1.92732 1.71361 1.59965 1.98366 1.21948 0.97606 0.83356 0.94449 0.89337 1.22992 1.04885 0.90924 0.97343 1.22362 1.03562 0.99383 0.77656 1.48306 1.70519 1.08028 1.08339 1.19821 0.75636 0.85245 0.85727 1.90694 1.52540 1.84828 1.16487 1.23296 1.06029 0.94343 1.03316 1.85622 1.92666 1.03217 1.11073 1.23227 1.55926 0.94907 0.95224 0.89763 1.26151 0.94081 1.02618 0.96320 1.70193 1.47070 1.28200 1.09347 0.84881 0.77981 0.76384 0.78547 1.17892 1.19804 1.20047 1.22486 1.01572 0.80570 0.97676 0.91534 0.89390 0.87172 0.84598 0.85572 0.92584 0.91894 0.87835 0.88383 0.87984 0.87111 0.90498 0.88893 0.87597 0.86991 0.91967 0.89356 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 8.99 127.77 1.15 1.35 16 2 N -0.60 -7.46 2.91 -814.84 -2.37 -9.83 16 3 C 0.51 8.01 7.67 87.66 0.67 8.68 16 4 O -0.59 -15.93 15.36 -3.05 -0.05 -15.98 16 5 C -0.12 -0.71 4.25 29.84 0.13 -0.58 16 6 C -0.14 -1.54 4.96 30.59 0.15 -1.38 16 7 C 0.06 0.40 7.55 71.98 0.54 0.94 16 8 F -0.24 -3.92 17.36 44.97 0.78 -3.14 16 9 C 0.13 2.33 3.45 46.38 0.16 2.49 16 10 H 0.09 2.14 7.01 -2.38 -0.02 2.12 16 11 C -0.12 -1.43 6.51 31.78 0.21 -1.22 16 12 C 0.09 1.62 6.49 86.73 0.56 2.18 16 13 N -0.62 -16.95 3.33 -811.70 -2.70 -19.65 16 14 C 0.55 21.35 7.87 87.66 0.69 22.04 16 15 O -0.57 -27.66 16.12 -3.03 -0.05 -27.71 16 16 C -0.12 -4.82 5.35 71.24 0.38 -4.44 16 17 S -0.15 -8.61 20.57 -56.49 -1.16 -9.78 16 18 C -0.55 -31.19 9.50 67.96 0.65 -30.55 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 22 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.10 2.35 6.49 86.84 0.56 2.91 16 27 H 0.07 0.23 8.08 -2.39 -0.02 0.21 16 28 H 0.09 0.18 6.21 -2.39 -0.01 0.16 16 29 H 0.11 -0.34 6.44 -2.38 -0.02 -0.35 16 30 H 0.14 -0.20 7.40 -2.39 -0.02 -0.22 16 31 H 0.13 0.10 8.11 -2.39 -0.02 0.08 16 32 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.11 0.71 6.20 -2.39 -0.01 0.70 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 41 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 43 H 0.09 1.72 7.10 -2.39 -0.02 1.71 16 44 H 0.05 1.52 8.04 -2.39 -0.02 1.50 16 Total: -1.00 -89.53 378.21 4.08 -85.45 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.00 Total: 7.40 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.32 Total: 3.63 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -4.79 Total: -85.42 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.10 Total: -43.69 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -89.53 4.08 -85.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743095184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.590 kcal (2) G-P(sol) polarization free energy of solvation -89.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds