Wall clock time and date at job start Tue Mar 31 2020 16:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47361 * 2 1 4 4 N 1.46495 * 109.47820 * 239.99388 * 2 1 3 5 5 C 1.34770 * 120.00059 * 84.99828 * 4 2 1 6 6 O 1.21283 * 119.99902 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00247 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47251 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47430 * 180.02562 * 8 7 5 10 10 F 1.39899 * 109.47718 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46761 * 119.99416 * 2 1 3 12 12 C 1.53940 * 113.74473 * 281.99666 * 11 2 1 13 13 N 1.47814 * 86.04054 * 222.08238 * 12 11 2 14 14 C 1.34764 * 134.45709 * 204.64091 * 13 12 11 15 15 O 1.21291 * 120.00109 * 179.86783 * 14 13 12 16 16 C 1.50703 * 120.00549 * 359.87293 * 14 13 12 17 17 S 1.80998 * 109.47492 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00016 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99941 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00080 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99791 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47567 * 60.00370 * 22 20 18 24 24 H 1.48506 * 109.46879 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47442 * 299.99940 * 22 20 18 26 26 C 1.47585 * 91.04769 * 24.54987 * 13 12 11 27 27 H 1.08998 * 109.47724 * 295.81447 * 1 2 3 28 28 H 1.09002 * 109.46689 * 55.81497 * 1 2 3 29 29 H 1.08998 * 109.47346 * 175.80764 * 1 2 3 30 30 H 0.97004 * 120.00092 * 265.01252 * 4 2 1 31 31 H 1.08994 * 109.47252 * 300.00488 * 7 5 4 32 32 H 1.08997 * 109.46891 * 60.00302 * 7 5 4 33 33 H 1.09004 * 109.46996 * 300.00198 * 8 7 5 34 34 H 1.09008 * 109.47198 * 59.99734 * 8 7 5 35 35 H 1.09004 * 109.47041 * 299.99985 * 9 8 7 36 36 H 1.09003 * 109.47370 * 60.00056 * 9 8 7 37 37 H 1.09004 * 112.94491 * 53.59042 * 11 2 1 38 38 H 1.08999 * 113.76889 * 336.35083 * 12 11 2 39 39 H 1.09004 * 113.76780 * 107.74293 * 12 11 2 40 40 H 1.09007 * 109.46633 * 299.99711 * 16 14 13 41 41 H 1.08993 * 109.47149 * 59.99276 * 16 14 13 42 42 H 0.97002 * 119.99806 * 179.97438 * 21 20 18 43 43 H 1.08994 * 113.76931 * 221.15338 * 26 13 12 44 44 H 1.09002 * 113.87262 * 89.76514 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8591 1.1584 -2.4115 7 6 2.6492 -0.7291 -3.5875 8 6 2.7014 0.2540 -4.7587 9 6 3.2104 -0.4675 -6.0081 10 9 3.2587 0.4316 -7.0788 11 6 2.0399 -0.7212 1.2494 12 6 1.9703 0.1316 2.5291 13 7 3.3066 -0.4162 2.8440 14 6 4.0037 -0.6089 3.9811 15 8 5.1136 -1.0959 3.9369 16 6 3.4041 -0.2196 5.3078 17 16 4.5756 -0.5994 6.6342 18 6 3.6445 -0.0586 8.0290 19 1 2.6574 0.3575 7.8909 20 6 4.1796 -0.1672 9.3051 21 7 5.3829 -0.6738 9.4732 22 14 3.1922 0.4054 10.7837 23 1 1.9240 -0.3633 10.8599 24 1 3.9814 0.1834 12.0220 25 1 2.8867 1.8520 10.6448 26 6 3.5697 -0.6693 1.4140 27 1 -0.3634 0.4475 0.9251 28 1 -0.3633 0.5774 -0.8501 29 1 -0.3634 -1.0249 -0.0751 30 1 2.2490 -1.6319 -1.1524 31 1 3.6482 -1.1216 -3.3983 32 1 1.9763 -1.5509 -3.8323 33 1 1.7024 0.6469 -4.9480 34 1 3.3745 1.0757 -4.5136 35 1 4.2093 -0.8607 -5.8190 36 1 2.5369 -1.2889 -6.2530 37 1 1.6197 -1.7204 1.3645 38 1 1.9686 1.2054 2.3419 39 1 1.1909 -0.1815 3.2239 40 1 3.1881 0.8489 5.3093 41 1 2.4811 -0.7770 5.4670 42 1 5.7570 -0.7494 10.3650 43 1 4.0649 -1.6207 1.2201 44 1 4.0390 0.1676 0.8969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756153909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:06 Heat of formation + Delta-G solvation = -133.767796 kcal Electronic energy + Delta-G solvation = -25057.224549 eV Core-core repulsion = 21049.691244 eV Total energy + Delta-G solvation = -4007.533305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.53392 -41.60710 -40.59808 -39.01750 -36.20428 -34.92528 -34.60019 -32.51270 -31.42250 -28.90897 -28.15392 -27.65796 -27.02926 -24.59325 -22.99145 -21.60754 -21.22710 -20.37690 -19.54077 -18.27802 -17.92083 -17.58887 -17.37817 -16.91631 -16.85565 -16.73973 -16.36876 -16.11535 -15.76565 -15.69534 -15.36488 -14.88710 -14.64099 -14.47382 -14.26149 -13.97419 -13.70045 -13.58627 -13.35168 -13.17840 -13.00301 -12.90575 -12.87000 -12.67801 -12.56767 -12.35656 -11.99992 -11.90794 -11.80021 -11.73876 -11.51901 -11.14098 -10.98432 -10.77931 -10.31505 -10.05473 -9.77836 -8.70128 -8.35815 -6.15150 1.20124 1.42281 1.43562 1.52514 1.55706 1.71588 1.95656 2.16793 2.26346 2.98273 3.17225 3.29319 3.59319 3.67911 3.71427 3.79966 3.91681 4.01862 4.13523 4.21297 4.23829 4.34395 4.42612 4.44813 4.45643 4.48510 4.52149 4.58356 4.63368 4.72327 4.79719 4.86863 4.90000 5.04664 5.05229 5.21410 5.30075 5.38502 5.39828 5.57076 6.18084 6.54441 6.63092 7.05025 7.08286 7.34459 8.73251 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.032388 B = 0.001706 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.302548 B =16404.123624 C =16969.194934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.073 0.927 4 N -0.714 5.714 5 C 0.509 3.491 6 O -0.589 6.589 7 C -0.131 4.131 8 C -0.138 4.138 9 C 0.057 3.943 10 F -0.243 7.243 11 C -0.103 4.103 12 C 0.107 3.893 13 N -0.651 5.651 14 C 0.552 3.448 15 O -0.571 6.571 16 C -0.120 4.120 17 S -0.152 6.152 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.263 1.263 26 C 0.109 3.891 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.418 0.582 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.272 0.728 43 H 0.084 0.916 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 -3.157 -28.794 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.092 0.908 4 N -0.367 5.367 5 C 0.297 3.703 6 O -0.469 6.469 7 C -0.171 4.171 8 C -0.176 4.176 9 C 0.002 3.998 10 F -0.224 7.224 11 C -0.122 4.122 12 C -0.015 4.015 13 N -0.387 5.387 14 C 0.341 3.659 15 O -0.450 6.450 16 C -0.271 4.271 17 S 0.075 5.925 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.013 4.013 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.255 0.745 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.441 -3.107 -28.622 30.980 hybrid contribution -1.120 0.770 1.147 1.778 sum -12.561 -2.337 -27.475 30.300 Atomic orbital electron populations 1.22110 0.93817 1.03101 1.02593 1.20793 0.94899 0.96360 0.82776 0.90835 1.45964 1.66941 1.14894 1.08864 1.21207 0.76529 0.86864 0.85677 1.90727 1.51974 1.18389 1.85786 1.21580 1.05719 0.99360 0.90407 1.21846 1.02581 0.98915 0.94280 1.22254 1.04746 0.90494 0.82261 1.92730 1.98195 1.71921 1.59575 1.23324 0.94010 1.01684 0.93207 1.23575 0.83289 0.99708 0.94949 1.50087 1.20171 1.62992 1.05443 1.19778 0.84028 0.77310 0.84757 1.90687 1.21212 1.45985 1.87076 1.23277 1.03743 1.05394 0.94655 1.85582 1.25281 1.83210 0.98422 1.23166 1.05097 1.48379 0.92960 0.89888 1.26142 0.96331 0.94580 1.02003 1.70181 1.17007 1.43331 1.24200 0.84991 0.78030 0.79113 0.75782 1.18487 1.20339 1.18728 1.23341 0.97321 1.02278 0.78339 0.90334 0.93744 0.90746 0.74512 0.85795 0.85295 0.91899 0.92299 0.88561 0.88160 0.85169 0.88127 0.87743 0.87908 0.87368 0.91942 0.89791 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.46 71.98 0.68 -0.78 16 2 C 0.16 1.61 2.29 44.99 0.10 1.71 16 3 H 0.07 1.12 7.49 -2.39 -0.02 1.10 16 4 N -0.71 -5.47 4.95 -442.55 -2.19 -7.66 16 5 C 0.51 6.29 7.79 87.66 0.68 6.97 16 6 O -0.59 -13.42 15.64 -3.04 -0.05 -13.47 16 7 C -0.13 -0.59 5.70 29.85 0.17 -0.42 16 8 C -0.14 -1.38 4.96 30.59 0.15 -1.23 16 9 C 0.06 0.39 7.55 71.98 0.54 0.94 16 10 F -0.24 -3.89 17.36 44.97 0.78 -3.11 16 11 C -0.10 -1.07 3.35 -10.13 -0.03 -1.10 16 12 C 0.11 1.60 8.01 86.44 0.69 2.29 16 13 N -0.65 -16.68 3.61 -835.88 -3.02 -19.70 16 14 C 0.55 21.17 8.08 87.66 0.71 21.88 16 15 O -0.57 -27.46 16.59 -3.06 -0.05 -27.51 16 16 C -0.12 -4.86 5.91 71.24 0.42 -4.44 16 17 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 18 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 22 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.11 1.94 8.28 86.49 0.72 2.65 16 27 H 0.08 0.61 7.99 -2.39 -0.02 0.59 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.42 0.65 8.60 -92.71 -0.80 -0.15 16 31 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.06 0.87 8.10 -2.38 -0.02 0.85 16 35 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 39 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.10 3.84 8.14 -2.39 -0.02 3.83 16 41 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -88.64 391.27 2.77 -85.87 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.20 Total: 6.65 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.95 Total: -1.00 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -4.92 Total: -83.08 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.10 Total: -40.98 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -88.64 2.77 -85.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756153909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.901 kcal (2) G-P(sol) polarization free energy of solvation -88.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds