Wall clock time and date at job start Tue Mar 31 2020 16:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.30654 * 34.30548 * 10 9 7 12 12 C 1.54386 * 110.34826 * 272.12518 * 10 9 7 13 13 N 1.48422 * 104.48329 * 264.97420 * 12 10 9 14 14 C 1.34782 * 127.82481 * 140.41676 * 13 12 10 15 15 O 1.21273 * 119.99949 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99675 * 359.96886 * 14 13 12 17 17 C 1.53010 * 119.29831 * 250.52111 * 16 14 13 18 18 C 1.53000 * 60.37824 * 248.69604 * 17 16 14 19 19 H 1.08994 * 119.75687 * 111.12058 * 18 17 16 20 20 C 1.54268 * 118.19710 * 266.38412 * 18 17 16 21 21 C 1.54892 * 104.19653 * 87.79012 * 20 18 17 22 22 C 1.54261 * 117.41719 * 46.17919 * 16 14 13 23 23 C 1.48140 * 104.33853 * 320.39017 * 13 12 10 24 24 C 1.54289 * 110.34164 * 156.47478 * 10 9 7 25 25 H 1.09001 * 110.34022 * 359.89677 * 24 10 9 26 26 C 1.53003 * 110.34618 * 237.74390 * 24 10 9 27 27 F 1.39904 * 109.47198 * 59.99523 * 26 24 10 28 28 F 1.39900 * 109.47450 * 179.97438 * 26 24 10 29 29 F 1.39900 * 109.46719 * 300.00075 * 26 24 10 30 30 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 32 32 H 1.09005 * 110.40535 * 23.78070 * 12 10 9 33 33 H 1.08994 * 110.41018 * 146.21335 * 12 10 9 34 34 H 1.08996 * 117.45755 * 356.29811 * 17 16 14 35 35 H 1.09001 * 117.45823 * 141.09552 * 17 16 14 36 36 H 1.08999 * 110.48411 * 206.46927 * 20 18 17 37 37 H 1.08997 * 110.49067 * 328.97765 * 20 18 17 38 38 H 1.09001 * 110.75257 * 80.36986 * 21 20 18 39 39 H 1.08996 * 110.75315 * 203.55617 * 21 20 18 40 40 H 1.09001 * 110.49138 * 235.05307 * 22 16 14 41 41 H 1.09005 * 110.48478 * 357.68595 * 22 16 14 42 42 H 1.08997 * 110.41033 * 280.83063 * 23 13 12 43 43 H 1.09002 * 110.50669 * 158.44750 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9786 -3.5620 0.5767 12 6 2.3731 -4.0947 -1.4460 13 7 1.2676 -5.0184 -1.8031 14 6 0.6220 -5.1181 -2.9820 15 8 -0.2679 -5.9304 -3.1193 16 6 1.0059 -4.2198 -4.1295 17 6 0.0461 -3.1111 -4.5661 18 6 0.2894 -4.3073 -5.4885 19 1 -0.5099 -5.0276 -5.6624 20 6 1.3813 -4.1827 -6.5712 21 6 2.6787 -4.6346 -5.8560 22 6 2.5097 -4.0596 -4.4338 23 6 1.0353 -5.8064 -0.5704 24 6 1.1777 -4.7844 0.5780 25 1 0.2008 -4.3940 0.8633 26 6 1.8638 -5.4308 1.7832 27 9 2.0753 -4.4648 2.7729 28 9 1.0506 -6.4490 2.2921 29 9 3.0928 -5.9690 1.3868 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.3793 -3.2316 -2.1117 33 1 3.3308 -4.6135 -1.4860 34 1 -0.9182 -3.0535 -4.0613 35 1 0.4815 -2.1551 -4.8572 36 1 1.1608 -4.8396 -7.4126 37 1 1.4688 -3.1497 -6.9077 38 1 2.7403 -5.7223 -5.8185 39 1 3.5567 -4.2162 -6.3479 40 1 2.7901 -3.0063 -4.4281 41 1 3.1065 -4.6180 -3.7125 42 1 1.7844 -6.5924 -0.4748 43 1 0.0334 -6.2359 -0.5749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099282673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:49 Heat of formation + Delta-G solvation = -160.785879 kcal Electronic energy + Delta-G solvation = -30488.236471 eV Core-core repulsion = 25925.691188 eV Total energy + Delta-G solvation = -4562.545284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.14011 -48.61440 -48.59091 -41.71520 -39.94614 -38.52027 -35.81721 -33.59463 -32.60980 -32.31680 -29.56405 -29.08970 -27.04457 -26.06525 -24.39678 -23.65234 -22.24163 -21.79041 -21.21211 -20.01035 -19.58100 -19.34824 -19.12059 -18.24311 -17.79909 -17.30995 -16.69243 -16.42677 -15.80948 -15.68166 -15.49964 -15.44633 -15.19127 -15.14691 -15.02307 -14.74965 -14.74656 -14.50481 -14.38317 -14.16521 -13.95646 -13.55809 -13.32063 -13.06726 -12.92142 -12.78181 -12.66463 -12.55593 -12.26053 -12.06874 -12.03261 -11.91824 -11.82667 -11.73969 -11.35098 -11.07713 -10.75107 -10.67941 -9.93635 -9.03122 -7.92885 -5.23606 1.39245 1.51645 1.52623 1.57095 1.60349 1.90731 2.54947 2.63434 2.74899 2.80850 2.96672 3.38313 3.39340 3.52229 3.65527 3.67539 3.76059 3.85777 3.89622 3.98960 4.19906 4.24226 4.41997 4.46837 4.48339 4.50496 4.64295 4.66494 4.73201 4.76704 4.82173 4.93182 4.97593 5.00342 5.15403 5.19890 5.25512 5.27311 5.47219 5.56070 6.24910 6.42998 7.04002 7.33964 8.00073 8.25191 9.29608 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.007867 B = 0.006031 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.261563 B = 4641.595861 C = 7254.873458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.293 1.293 5 H -0.263 1.263 6 H -0.302 1.302 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.720 5.720 10 C 0.173 3.827 11 H 0.082 0.918 12 C 0.084 3.916 13 N -0.608 5.608 14 C 0.575 3.425 15 O -0.587 6.587 16 C -0.182 4.182 17 C -0.122 4.122 18 C -0.122 4.122 19 H 0.105 0.895 20 C -0.090 4.090 21 C -0.116 4.116 22 C -0.084 4.084 23 C 0.118 3.882 24 C -0.157 4.157 25 H 0.116 0.884 26 C 0.473 3.527 27 F -0.184 7.184 28 F -0.182 7.182 29 F -0.175 7.175 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.481 -11.192 -7.658 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.258 4.258 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.188 1.188 6 H -0.229 1.229 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.359 5.359 10 C 0.062 3.938 11 H 0.100 0.900 12 C -0.041 4.041 13 N -0.339 5.339 14 C 0.366 3.634 15 O -0.468 6.468 16 C -0.185 4.185 17 C -0.159 4.159 18 C -0.140 4.140 19 H 0.123 0.877 20 C -0.128 4.128 21 C -0.153 4.153 22 C -0.121 4.121 23 C -0.005 4.005 24 C -0.178 4.178 25 H 0.134 0.866 26 C 0.419 3.581 27 F -0.166 7.166 28 F -0.163 7.163 29 F -0.156 7.156 30 H 0.058 0.942 31 H 0.206 0.794 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.149 -11.515 -7.794 15.635 hybrid contribution -0.554 0.972 0.885 1.426 sum 6.595 -10.544 -6.910 14.227 Atomic orbital electron populations 1.69816 1.06651 1.25948 1.59089 1.25454 0.96095 1.00793 1.03414 0.85262 0.78059 0.79979 0.77166 1.22030 1.18770 1.22869 1.19567 0.91650 0.84363 1.41307 0.89667 1.42513 1.05213 1.00120 1.88048 1.21244 0.94190 0.84219 0.94187 0.90035 1.23581 0.89204 0.93390 0.97888 1.48786 1.36638 1.38064 1.10437 1.19464 0.79664 0.82251 0.82015 1.90630 1.32918 1.39943 1.83299 1.22310 0.96924 1.03709 0.95554 1.23037 0.98395 0.93838 1.00651 1.23488 1.00507 1.00214 0.89825 0.87654 1.22037 0.91877 1.02834 0.96016 1.22574 0.98245 1.00851 0.93666 1.21948 0.89648 1.02354 0.98156 1.22196 1.04092 0.92715 0.81466 1.23704 1.02576 0.98609 0.92943 0.86580 1.20044 0.77218 0.76330 0.84529 1.93218 1.95025 1.63639 1.64690 1.93185 1.72842 1.61507 1.88767 1.93170 1.45196 1.86712 1.90538 0.94192 0.79435 0.89346 0.88365 0.90124 0.86955 0.89472 0.89882 0.91572 0.88703 0.90287 0.90603 0.88002 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.97 43.22 29.55 68.60 2.03 45.25 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.24 -11.75 9.96 84.03 0.84 -10.91 16 8 H 0.09 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -32.12 5.12 -318.66 -1.63 -33.76 16 10 C 0.17 5.82 2.99 45.90 0.14 5.96 16 11 H 0.08 2.70 7.35 -2.39 -0.02 2.68 16 12 C 0.08 2.47 5.05 86.48 0.44 2.91 16 13 N -0.61 -18.84 3.31 -807.27 -2.67 -21.51 16 14 C 0.58 19.77 7.51 87.66 0.66 20.43 16 15 O -0.59 -23.68 17.06 -3.01 -0.05 -23.73 16 16 C -0.18 -5.24 2.18 -52.20 -0.11 -5.35 16 17 C -0.12 -3.54 9.87 30.60 0.30 -3.24 16 18 C -0.12 -3.07 6.55 -10.07 -0.07 -3.13 16 19 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 20 C -0.09 -1.62 6.63 31.67 0.21 -1.41 16 21 C -0.12 -2.02 6.88 31.69 0.22 -1.80 16 22 C -0.08 -1.88 4.83 31.47 0.15 -1.73 16 23 C 0.12 3.29 6.38 86.53 0.55 3.85 16 24 C -0.16 -4.66 2.84 -9.88 -0.03 -4.69 16 25 H 0.12 3.79 7.65 -2.39 -0.02 3.77 16 26 C 0.47 13.08 2.53 71.98 0.18 13.26 16 27 F -0.18 -5.91 16.92 44.97 0.76 -5.14 16 28 F -0.18 -4.83 17.17 44.97 0.77 -4.06 16 29 F -0.17 -4.40 16.05 44.97 0.72 -3.68 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.37 18.69 7.53 -92.71 -0.70 17.99 16 32 H 0.09 2.88 6.43 -2.38 -0.02 2.87 16 33 H 0.10 2.28 7.99 -2.39 -0.02 2.26 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.66 6.44 -2.38 -0.02 1.64 16 42 H 0.10 2.38 7.21 -2.39 -0.02 2.36 16 43 H 0.09 2.56 7.88 -2.39 -0.02 2.54 16 Total: -1.00 -62.71 359.04 4.51 -58.20 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.35 Total: 32.85 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 3.95 Total: 11.16 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.02 Total: -110.85 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 9 Polarization: -15.14 SS G_CDS: 2.25 Total: -12.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -62.71 4.51 -58.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099282673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.589 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds