Wall clock time and date at job start Tue Mar 31 2020 17:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30867 * 126.20804 * 2 1 4 4 C 1.34567 * 107.29005 * 180.13780 * 3 2 1 5 5 C 1.47836 * 126.01957 * 179.86836 * 4 3 2 6 6 O 1.21560 * 119.99757 * 179.69372 * 5 4 3 7 7 N 1.34774 * 120.00202 * 359.69065 * 5 4 3 8 8 C 1.46500 * 119.99908 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47089 * 180.02562 * 8 7 5 10 10 C 1.31005 * 119.99932 * 124.72256 * 9 8 7 11 11 C 1.50699 * 119.99776 * 180.27660 * 10 9 8 12 12 N 1.46500 * 109.46915 * 125.00274 * 11 10 9 13 13 C 1.36942 * 120.00107 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99683 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00133 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47290 * 60.00260 * 17 15 13 19 19 H 1.48503 * 109.47219 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47328 * 299.99663 * 17 15 13 21 21 N 1.31552 * 107.95755 * 359.60679 * 4 3 2 22 22 N 1.28856 * 108.70648 * 0.23875 * 21 4 3 23 23 C 1.40101 * 125.76913 * 179.97438 * 22 21 4 24 24 N 1.33622 * 125.60137 * 359.97438 * 23 22 21 25 25 C 1.30800 * 109.79729 * 179.97438 * 24 23 22 26 26 N 1.34435 * 108.19387 * 359.97438 * 25 24 23 27 27 H 0.96999 * 126.77519 * 180.02562 * 26 25 24 28 28 N 1.31158 * 125.59401 * 179.67123 * 23 22 21 29 29 H 1.09001 * 109.47439 * 270.29432 * 1 2 3 30 30 H 1.09005 * 109.46915 * 30.29441 * 1 2 3 31 31 H 1.09000 * 109.47280 * 150.29151 * 1 2 3 32 32 H 0.96998 * 120.00136 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47243 * 60.00184 * 8 7 5 34 34 H 1.08999 * 109.47363 * 300.00163 * 8 7 5 35 35 H 1.08002 * 120.00299 * 305.00592 * 9 8 7 36 36 H 1.08002 * 119.99713 * 0.27722 * 10 9 8 37 37 H 1.09005 * 109.46922 * 245.00183 * 11 10 9 38 38 H 1.08994 * 109.47613 * 5.00521 * 11 10 9 39 39 H 0.97006 * 120.00083 * 0.02562 * 12 11 10 40 40 H 0.97000 * 120.00151 * 179.97438 * 16 15 13 41 41 H 1.07997 * 125.90709 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0559 0.0000 4 6 3.5530 0.6196 -0.0031 5 6 4.7631 1.4689 -0.0070 6 8 5.8653 0.9564 -0.0039 7 7 4.6442 2.8114 -0.0140 8 6 5.8433 3.6529 -0.0173 9 6 5.4384 5.1045 -0.0244 10 6 5.8842 5.9135 0.9045 11 6 5.4742 7.3637 0.9009 12 7 4.8839 7.7074 2.1969 13 6 4.4352 8.9802 2.4289 14 1 4.5161 9.7305 1.6564 15 6 3.8763 9.3061 3.6570 16 7 3.7781 8.3918 4.5988 17 14 3.2636 11.0421 3.9732 18 1 2.1985 11.3772 2.9942 19 1 2.7160 11.1306 5.3508 20 1 4.3897 11.9990 3.8264 21 7 3.5310 -0.6957 0.0037 22 7 2.3037 -1.0884 0.0057 23 6 1.8703 -2.4207 0.0120 24 7 2.6628 -3.4965 0.0165 25 6 1.9346 -4.5831 0.0224 26 7 0.6400 -4.2209 0.0225 27 1 -0.1286 -4.8126 0.0265 28 7 0.6199 -2.8166 0.0202 29 1 -0.3634 0.0053 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5093 32 1 3.7646 3.2204 -0.0161 33 1 6.4367 3.4365 -0.9057 34 1 6.4352 3.4456 0.8743 35 1 4.7769 5.4768 -0.7927 36 1 6.5456 5.5412 1.6728 37 1 6.3497 7.9883 0.7233 38 1 4.7415 7.5322 0.1118 39 1 4.8115 7.0335 2.8909 40 1 3.3879 8.6196 5.4571 41 1 2.3087 -5.5962 0.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321190820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:10 Heat of formation + Delta-G solvation = 198.925756 kcal Electronic energy + Delta-G solvation = -26087.434013 eV Core-core repulsion = 22043.388896 eV Total energy + Delta-G solvation = -4044.045118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.13902 -42.90238 -39.50980 -36.24972 -35.35280 -34.69123 -33.75903 -33.05798 -32.73694 -31.40208 -30.51759 -28.60364 -27.58657 -25.43981 -24.39363 -23.78723 -22.50971 -21.86393 -21.00628 -20.59693 -19.50549 -19.34433 -18.27498 -17.62821 -17.15732 -17.04048 -16.05426 -15.97640 -15.69145 -15.16874 -14.82587 -14.57145 -14.18851 -13.80119 -13.61097 -13.49797 -13.40421 -13.21039 -12.85483 -12.77518 -12.22783 -12.02766 -11.89224 -11.77191 -11.00141 -10.99142 -10.98433 -10.86616 -10.77776 -10.61200 -10.38829 -10.37917 -10.06804 -9.76227 -9.70867 -9.24325 -8.95523 -8.67549 -6.90665 -5.73841 -3.03384 0.23848 0.86882 1.09704 1.63409 2.00495 2.27076 2.28183 2.98936 3.19653 3.40650 3.46602 3.50538 3.51957 3.61542 3.76243 4.23894 4.50260 4.62836 4.77991 5.01262 5.03744 5.07215 5.13819 5.31910 5.38160 5.57850 5.58833 5.65559 5.79756 5.85722 6.04745 6.11611 6.13599 6.18141 6.31049 6.52719 6.61890 6.95512 6.96836 7.19889 7.35667 7.68338 7.71413 8.07080 8.44441 9.55531 10.12393 10.47638 11.48789 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.001859 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.630144 B =15062.096125 C =16225.780069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.252 3.748 3 N -0.467 5.467 4 C 0.165 3.835 5 C 0.615 3.385 6 O -0.515 6.515 7 N -0.699 5.699 8 C 0.157 3.843 9 C -0.201 4.201 10 C -0.104 4.104 11 C 0.172 3.828 12 N -0.729 5.729 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.910 3.090 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 N -0.224 5.224 22 N -0.232 5.232 23 C 0.461 3.539 24 N -0.519 5.519 25 C 0.294 3.706 26 N -0.466 5.466 27 H 0.453 0.547 28 N -0.293 5.293 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.414 0.586 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.031 0.969 38 H 0.026 0.974 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 -30.461 -12.662 34.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 N -0.193 5.193 4 C -0.116 4.116 5 C 0.395 3.605 6 O -0.388 6.388 7 N -0.351 5.351 8 C 0.035 3.965 9 C -0.221 4.221 10 C -0.124 4.124 11 C 0.045 3.955 12 N -0.374 5.374 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 N -0.059 5.059 22 N -0.025 5.025 23 C 0.091 3.909 24 N -0.248 5.248 25 C -0.005 4.005 26 N -0.187 5.187 27 H 0.301 0.699 28 N -0.129 5.129 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.250 0.750 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.329 -30.119 -12.663 33.718 hybrid contribution -1.405 0.096 0.536 1.507 sum -9.735 -30.023 -12.127 33.811 Atomic orbital electron populations 1.20557 0.82056 1.05650 1.05281 1.25325 0.97926 0.80333 0.98793 1.71454 1.00334 1.26782 1.20692 1.24028 0.93151 0.88567 1.05896 1.16139 0.84818 0.81788 0.77711 1.90851 1.25169 1.73553 1.49190 1.45741 1.11641 1.04354 1.73404 1.20423 0.86180 0.87205 1.02715 1.22667 1.04321 0.93398 1.01667 1.23345 0.96448 0.96872 0.95731 1.19828 0.95825 0.89489 0.90336 1.42291 1.72909 1.10933 1.11238 1.19202 1.32531 0.87716 0.97865 0.91118 1.24766 1.01901 0.97904 0.96419 1.69661 1.50582 1.32697 1.05148 0.86233 0.78611 0.84164 0.76958 1.21234 1.21689 1.21234 1.74701 0.99138 1.13585 1.18493 1.43129 1.04578 1.02664 1.52151 1.19352 0.87285 0.83765 1.00484 1.70360 1.33972 0.95814 1.24622 1.26307 0.80324 1.00145 0.93735 1.48043 1.09778 1.04244 1.56621 0.69869 1.78248 1.15744 0.89957 1.28979 0.88502 0.87766 0.88521 0.74952 0.90532 0.90682 0.86532 0.87179 0.95138 0.95589 0.78105 0.93428 0.74352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.84 36.00 0.35 -0.18 16 2 C 0.25 2.92 7.94 -155.25 -1.23 1.69 16 3 N -0.47 -6.40 11.09 -8.47 -0.09 -6.50 16 4 C 0.16 2.56 7.96 -156.31 -1.24 1.32 16 5 C 0.61 9.88 7.83 -12.33 -0.10 9.79 16 6 O -0.52 -9.66 17.08 5.31 0.09 -9.57 16 7 N -0.70 -9.77 5.55 -62.43 -0.35 -10.12 16 8 C 0.16 2.12 6.11 -5.19 -0.03 2.09 16 9 C -0.20 -2.85 9.24 -36.03 -0.33 -3.19 16 10 C -0.10 -1.74 9.24 -36.03 -0.33 -2.07 16 11 C 0.17 3.51 6.70 -5.19 -0.03 3.48 16 12 N -0.73 -18.93 5.59 -61.09 -0.34 -19.27 16 13 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 17 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 N -0.22 -3.56 12.03 32.08 0.39 -3.18 16 22 N -0.23 -3.02 3.52 -10.92 -0.04 -3.06 16 23 C 0.46 4.88 8.74 -320.53 -2.80 2.08 16 24 N -0.52 -4.95 11.20 -14.87 -0.17 -5.11 16 25 C 0.29 0.93 13.12 -90.68 -1.19 -0.26 16 26 N -0.47 -1.17 7.44 29.52 0.22 -0.95 16 27 H 0.45 -0.86 8.96 -182.34 -1.63 -2.49 16 28 N -0.29 -2.11 10.41 30.08 0.31 -1.80 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.57 6.33 -51.93 -0.33 0.24 16 32 H 0.41 5.40 8.17 -40.82 -0.33 5.07 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.06 7.79 -51.93 -0.40 0.65 16 35 H 0.12 1.56 7.84 -52.49 -0.41 1.15 16 36 H 0.11 1.79 7.84 -52.49 -0.41 1.38 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.53 7.79 -51.93 -0.40 0.12 16 39 H 0.39 10.54 7.66 -40.82 -0.31 10.23 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.24 -0.62 8.06 -52.49 -0.42 -1.04 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -40.17 369.19 -11.80 -51.98 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.90 Total: 5.16 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -7.19 Total: 7.20 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: 0.66 Total: -77.95 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.17 -11.80 -51.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321190820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.902 kcal (2) G-P(sol) polarization free energy of solvation -40.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds