Wall clock time and date at job start Tue Mar 31 2020 17:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30867 * 126.20804 * 2 1 4 4 C 1.34567 * 107.29005 * 180.13780 * 3 2 1 5 5 C 1.47836 * 126.01957 * 179.86836 * 4 3 2 6 6 O 1.21560 * 119.99757 * 179.69372 * 5 4 3 7 7 N 1.34774 * 120.00202 * 359.69065 * 5 4 3 8 8 C 1.46500 * 119.99908 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47089 * 180.02562 * 8 7 5 10 10 C 1.31005 * 119.99932 * 124.72256 * 9 8 7 11 11 C 1.50699 * 119.99776 * 180.27660 * 10 9 8 12 12 N 1.46500 * 109.46915 * 125.00274 * 11 10 9 13 13 C 1.36942 * 120.00107 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99683 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00133 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47290 * 60.00260 * 17 15 13 19 19 H 1.48503 * 109.47219 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47328 * 299.99663 * 17 15 13 21 21 N 1.31552 * 107.95755 * 359.60679 * 4 3 2 22 22 N 1.28856 * 108.70648 * 0.23875 * 21 4 3 23 23 C 1.40101 * 125.76913 * 179.97438 * 22 21 4 24 24 N 1.33622 * 125.60137 * 359.97438 * 23 22 21 25 25 C 1.30800 * 109.79729 * 179.97438 * 24 23 22 26 26 N 1.34435 * 108.19387 * 359.97438 * 25 24 23 27 27 H 0.96999 * 126.77519 * 180.02562 * 26 25 24 28 28 N 1.31158 * 125.59401 * 179.67123 * 23 22 21 29 29 H 1.09001 * 109.47439 * 270.29432 * 1 2 3 30 30 H 1.09005 * 109.46915 * 30.29441 * 1 2 3 31 31 H 1.09000 * 109.47280 * 150.29151 * 1 2 3 32 32 H 0.96998 * 120.00136 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47243 * 60.00184 * 8 7 5 34 34 H 1.08999 * 109.47363 * 300.00163 * 8 7 5 35 35 H 1.08002 * 120.00299 * 305.00592 * 9 8 7 36 36 H 1.08002 * 119.99713 * 0.27722 * 10 9 8 37 37 H 1.09005 * 109.46922 * 245.00183 * 11 10 9 38 38 H 1.08994 * 109.47613 * 5.00521 * 11 10 9 39 39 H 0.97006 * 120.00083 * 0.02562 * 12 11 10 40 40 H 0.97000 * 120.00151 * 179.97438 * 16 15 13 41 41 H 1.07997 * 125.90709 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0559 0.0000 4 6 3.5530 0.6196 -0.0031 5 6 4.7631 1.4689 -0.0070 6 8 5.8653 0.9564 -0.0039 7 7 4.6442 2.8114 -0.0140 8 6 5.8433 3.6529 -0.0173 9 6 5.4384 5.1045 -0.0244 10 6 5.8842 5.9135 0.9045 11 6 5.4742 7.3637 0.9009 12 7 4.8839 7.7074 2.1969 13 6 4.4352 8.9802 2.4289 14 1 4.5161 9.7305 1.6564 15 6 3.8763 9.3061 3.6570 16 7 3.7781 8.3918 4.5988 17 14 3.2636 11.0421 3.9732 18 1 2.1985 11.3772 2.9942 19 1 2.7160 11.1306 5.3508 20 1 4.3897 11.9990 3.8264 21 7 3.5310 -0.6957 0.0037 22 7 2.3037 -1.0884 0.0057 23 6 1.8703 -2.4207 0.0120 24 7 2.6628 -3.4965 0.0165 25 6 1.9346 -4.5831 0.0224 26 7 0.6400 -4.2209 0.0225 27 1 -0.1286 -4.8126 0.0265 28 7 0.6199 -2.8166 0.0202 29 1 -0.3634 0.0053 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5093 32 1 3.7646 3.2204 -0.0161 33 1 6.4367 3.4365 -0.9057 34 1 6.4352 3.4456 0.8743 35 1 4.7769 5.4768 -0.7927 36 1 6.5456 5.5412 1.6728 37 1 6.3497 7.9883 0.7233 38 1 4.7415 7.5322 0.1118 39 1 4.8115 7.0335 2.8909 40 1 3.3879 8.6196 5.4571 41 1 2.3087 -5.5962 0.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321190820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:09 Heat of formation + Delta-G solvation = 170.820904 kcal Electronic energy + Delta-G solvation = -26088.652731 eV Core-core repulsion = 22043.388896 eV Total energy + Delta-G solvation = -4045.263836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.05505 -43.40468 -40.75211 -37.69759 -36.34473 -36.11832 -34.60498 -34.43035 -33.53520 -32.50125 -31.87864 -29.39385 -29.00703 -26.80997 -25.37789 -24.93855 -23.59140 -23.08810 -21.98274 -21.57753 -20.79150 -19.82876 -19.29908 -18.98779 -18.48805 -18.01104 -17.21793 -16.80184 -16.67795 -16.21902 -16.03604 -15.85590 -15.37585 -15.27084 -15.11037 -14.85598 -14.32663 -14.13975 -14.02249 -13.55465 -13.49254 -13.34196 -12.91061 -12.87860 -12.69139 -12.67543 -12.22676 -11.98802 -11.90141 -11.80872 -11.67755 -11.51288 -11.47866 -11.18109 -11.00486 -10.57697 -10.40100 -10.02719 -8.99384 -7.93919 -5.23990 -0.51743 0.18091 0.40088 0.74791 1.01339 1.49112 1.52780 1.58875 1.65265 1.70704 1.90680 2.01683 2.58833 2.63799 2.89122 3.15304 3.39575 3.57426 3.72833 3.78919 4.11129 4.25804 4.31102 4.46863 4.52631 4.54594 4.56703 4.64968 4.66788 4.71782 4.88561 4.94556 4.97926 5.03109 5.12911 5.40255 5.49121 5.66940 5.84614 5.97936 6.17677 6.27791 6.47904 6.77332 6.89560 7.33697 8.08384 8.32157 9.29427 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.001859 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.630144 B =15062.096125 C =16225.780069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.254 3.746 3 N -0.482 5.482 4 C 0.147 3.853 5 C 0.616 3.384 6 O -0.550 6.550 7 N -0.688 5.688 8 C 0.157 3.843 9 C -0.163 4.163 10 C -0.127 4.127 11 C 0.173 3.827 12 N -0.745 5.745 13 C -0.249 4.249 14 H 0.079 0.921 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.978 3.022 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.277 1.277 21 N -0.256 5.256 22 N -0.234 5.234 23 C 0.424 3.576 24 N -0.574 5.574 25 C 0.317 3.683 26 N -0.442 5.442 27 H 0.474 0.526 28 N -0.292 5.292 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.420 0.580 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.254 -31.754 -13.802 36.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.021 4.021 3 N -0.209 5.209 4 C -0.134 4.134 5 C 0.397 3.603 6 O -0.425 6.425 7 N -0.340 5.340 8 C 0.035 3.965 9 C -0.182 4.182 10 C -0.147 4.147 11 C 0.047 3.953 12 N -0.387 5.387 13 C -0.381 4.381 14 H 0.097 0.903 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.807 3.193 18 H -0.201 1.201 19 H -0.222 1.222 20 H -0.203 1.203 21 N -0.092 5.092 22 N -0.026 5.026 23 C 0.055 3.945 24 N -0.305 5.305 25 C 0.019 3.981 26 N -0.165 5.165 27 H 0.328 0.672 28 N -0.129 5.129 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.257 0.743 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -10.175 -31.436 -13.854 35.829 hybrid contribution -0.936 0.256 0.791 1.252 sum -11.112 -31.180 -13.062 35.585 Atomic orbital electron populations 1.20784 0.78836 1.06916 1.06479 1.26126 0.99354 0.79575 0.96998 1.71413 0.99734 1.27910 1.21842 1.23877 0.93621 0.88667 1.07277 1.16255 0.84674 0.82205 0.77130 1.90816 1.26439 1.74217 1.51057 1.45654 1.12044 1.03821 1.72475 1.20445 0.86130 0.86555 1.03322 1.22724 1.02079 0.93113 1.00296 1.23036 0.98754 0.95367 0.97502 1.19922 0.95572 0.91854 0.87962 1.42531 1.73209 1.10012 1.12971 1.19657 1.31483 0.88934 0.98020 0.90291 1.25646 1.02925 1.01997 0.96421 1.69830 1.52082 1.34758 1.05426 0.85145 0.78276 0.79448 0.76476 1.20139 1.22200 1.20284 1.74573 1.01277 1.13891 1.19497 1.43218 1.03803 1.04203 1.51391 1.19517 0.88435 0.83190 1.03309 1.70282 1.36273 0.97080 1.26898 1.27271 0.79653 1.00613 0.90540 1.48012 1.10857 1.02769 1.54881 0.67240 1.78132 1.14291 0.92474 1.27966 0.87107 0.86309 0.87296 0.74284 0.88992 0.91129 0.85028 0.87164 0.94968 0.94811 0.79448 0.93977 0.68962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 9.84 71.23 0.70 -0.19 16 2 C 0.25 5.89 7.94 138.07 1.10 6.98 16 3 N -0.48 -13.43 11.09 -180.73 -2.00 -15.43 16 4 C 0.15 4.73 7.96 137.10 1.09 5.82 16 5 C 0.62 20.37 7.83 86.78 0.68 21.05 16 6 O -0.55 -21.34 17.08 -3.90 -0.07 -21.41 16 7 N -0.69 -19.15 5.55 -469.71 -2.60 -21.76 16 8 C 0.16 4.13 6.11 85.63 0.52 4.65 16 9 C -0.16 -4.39 9.24 25.64 0.24 -4.15 16 10 C -0.13 -4.16 9.24 25.64 0.24 -3.93 16 11 C 0.17 6.95 6.70 85.63 0.57 7.53 16 12 N -0.74 -38.89 5.59 -347.18 -1.94 -40.84 16 13 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 16 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 17 Si 0.98 46.59 29.55 68.60 2.03 48.61 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 N -0.26 -8.48 12.03 -52.43 -0.63 -9.11 16 22 N -0.23 -6.20 3.52 -188.46 -0.66 -6.86 16 23 C 0.42 8.82 8.74 260.69 2.28 11.10 16 24 N -0.57 -10.53 11.20 -200.95 -2.25 -12.78 16 25 C 0.32 1.13 13.12 180.37 2.37 3.50 16 26 N -0.44 -0.94 7.44 -60.51 -0.45 -1.39 16 27 H 0.47 -3.51 8.96 -213.10 -1.91 -5.42 16 28 N -0.29 -3.72 10.41 -58.74 -0.61 -4.33 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.11 1.10 6.33 -2.39 -0.02 1.08 16 32 H 0.42 10.78 8.17 -92.71 -0.76 10.02 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 35 H 0.13 3.21 7.84 -2.91 -0.02 3.19 16 36 H 0.11 3.61 7.84 -2.91 -0.02 3.58 16 37 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.03 1.32 7.79 -2.39 -0.02 1.30 16 39 H 0.37 20.89 7.66 -92.70 -0.71 20.18 16 40 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.30 -2.83 8.06 -2.91 -0.02 -2.86 16 Total: -1.00 -90.49 369.19 -0.07 -90.57 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -2.25 Total: 20.13 kcal Atomic # 6 Polarization: 23.85 SS G_CDS: 11.09 Total: 34.94 kcal Atomic # 7 Polarization: -161.97 SS G_CDS: -10.87 Total: -172.84 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.07 Total: -21.41 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -90.49 -0.07 -90.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321190820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.389 kcal (2) G-P(sol) polarization free energy of solvation -90.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds