Wall clock time and date at job start Tue Mar 31 2020 17:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47025 * 40.34394 * 3 2 1 5 5 C 1.52997 * 109.46922 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47382 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99658 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00452 * 179.97438 * 6 5 4 9 9 C 1.47207 * 120.81153 * 0.14103 * 8 6 5 10 10 C 1.53195 * 108.85456 * 126.34215 * 9 8 6 11 11 C 1.53038 * 109.31078 * 54.64814 * 10 9 8 12 12 H 1.09004 * 109.46331 * 58.66047 * 11 10 9 13 13 C 1.52999 * 109.44764 * 178.62245 * 11 10 9 14 14 F 1.39902 * 109.47133 * 180.02562 * 13 11 10 15 15 F 1.39910 * 109.47128 * 300.06152 * 13 11 10 16 16 F 1.39896 * 109.47587 * 60.06236 * 13 11 10 17 17 C 1.53035 * 109.54175 * 298.63655 * 11 10 9 18 18 H 1.09000 * 109.52700 * 181.33397 * 17 11 10 19 19 N 1.46504 * 109.49646 * 301.41218 * 17 11 10 20 20 C 1.36937 * 119.99806 * 204.83463 * 19 17 11 21 21 H 1.07996 * 120.00285 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99770 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99934 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99865 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47421 * 60.00261 * 24 22 20 26 26 H 1.48504 * 109.47219 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47589 * 300.00301 * 24 22 20 28 28 C 1.46926 * 120.63302 * 180.02562 * 8 6 5 29 29 H 4.44649 * 5.63230 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47383 * 280.33833 * 3 2 1 31 31 H 1.08996 * 109.46490 * 160.34002 * 3 2 1 32 32 H 1.08998 * 109.47498 * 59.99509 * 4 3 2 33 33 H 1.09004 * 109.46843 * 299.99144 * 4 3 2 34 34 H 1.08998 * 109.47350 * 59.99522 * 5 4 3 35 35 H 1.09003 * 109.47457 * 299.99533 * 5 4 3 36 36 H 1.08996 * 109.53610 * 6.53712 * 9 8 6 37 37 H 1.09002 * 109.68003 * 246.23180 * 9 8 6 38 38 H 1.09002 * 109.49713 * 294.70061 * 10 9 8 39 39 H 1.09001 * 109.52547 * 174.62020 * 10 9 8 40 40 H 0.96993 * 119.99740 * 24.84407 * 19 17 11 41 41 H 0.96994 * 119.99878 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.58861 * 113.81616 * 28 8 6 43 43 H 1.08996 * 109.58519 * 353.53507 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0986 -0.9339 5 6 4.6865 -1.0974 -0.9343 6 6 5.1894 -2.1805 -1.8536 7 8 4.4016 -2.8837 -2.4501 8 7 6.5145 -2.3670 -2.0138 9 6 7.4865 -1.5252 -1.2972 10 6 8.4594 -2.4310 -0.5357 11 6 9.0911 -3.4276 -1.5102 12 1 9.6099 -2.8843 -2.3000 13 6 10.0890 -4.3115 -0.7594 14 9 10.6673 -5.2224 -1.6499 15 9 11.0885 -3.5112 -0.1954 16 9 9.4235 -5.0096 0.2540 17 6 7.9981 -4.3033 -2.1270 18 1 8.4506 -5.0287 -2.8031 19 7 7.2785 -5.0087 -1.0636 20 6 6.6359 -6.1868 -1.3367 21 1 6.6599 -6.5960 -2.3358 22 6 5.9537 -6.8549 -0.3291 23 7 5.9240 -6.3559 0.8884 24 14 5.0778 -8.4622 -0.7014 25 1 6.0621 -9.4605 -1.1911 26 1 4.4296 -8.9705 0.5343 27 1 4.0448 -8.2333 -1.7434 28 6 7.0200 -3.4184 -2.9070 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0095 -0.1836 1.0109 31 1 3.0088 0.9686 -0.3457 32 1 2.7930 -0.9143 -1.9448 33 1 2.7937 -2.0665 -0.5880 34 1 5.0503 -1.2815 0.0765 35 1 5.0491 -0.1295 -1.2803 36 1 6.9608 -0.8801 -0.5932 37 1 8.0389 -0.9137 -2.0107 38 1 7.9196 -2.9735 0.2405 39 1 9.2408 -1.8237 -0.0788 40 1 7.2571 -4.6413 -0.1662 41 1 5.4470 -6.8225 1.5923 42 1 7.5341 -2.9629 -3.7533 43 1 6.1877 -4.0230 -3.2673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701014721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:33 Heat of formation + Delta-G solvation = -149.447805 kcal Electronic energy + Delta-G solvation = -30277.059316 eV Core-core repulsion = 25715.005688 eV Total energy + Delta-G solvation = -4562.053628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.90271 -48.43684 -48.31448 -41.16075 -38.99132 -36.46218 -35.86469 -34.27153 -33.23736 -32.71075 -30.50071 -29.18707 -27.66439 -25.87997 -24.46198 -24.00106 -23.07982 -21.18775 -20.05541 -19.34261 -19.15904 -19.05494 -18.85624 -18.39140 -17.48359 -16.99263 -16.87038 -16.33322 -16.00064 -15.69137 -15.48367 -15.24245 -15.05975 -14.88650 -14.80420 -14.56493 -14.51357 -14.42708 -14.27553 -14.12918 -13.77192 -13.58874 -13.49080 -13.26371 -13.05162 -12.84364 -12.75110 -12.43624 -12.29572 -12.12181 -11.92455 -11.89640 -11.66506 -11.52958 -11.13842 -11.04779 -10.95556 -10.60953 -9.59762 -8.86880 -7.92475 -5.17077 1.41002 1.44355 1.48321 1.80445 1.86844 1.93736 1.97725 2.27746 2.54430 2.98474 3.11571 3.26803 3.41848 3.53360 3.69778 3.81950 3.98142 3.99248 4.10226 4.14730 4.16604 4.30668 4.40558 4.57735 4.64429 4.68870 4.71258 4.74773 4.79142 4.82403 4.84446 4.92638 5.14904 5.22845 5.23520 5.31006 5.35208 5.50472 5.73961 6.28908 6.62613 6.73350 7.38653 7.42533 8.11241 8.34582 9.30134 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.004639 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.951080 B = 6034.353323 C = 7937.066973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.217 4.217 3 C -0.007 4.007 4 C -0.094 4.094 5 C -0.127 4.127 6 C 0.503 3.497 7 O -0.597 6.597 8 N -0.602 5.602 9 C 0.113 3.887 10 C -0.133 4.133 11 C -0.127 4.127 12 H 0.155 0.845 13 C 0.450 3.550 14 F -0.196 7.196 15 F -0.186 7.186 16 F -0.185 7.185 17 C 0.156 3.844 18 H 0.062 0.938 19 N -0.717 5.717 20 C -0.230 4.230 21 H 0.066 0.934 22 C -0.066 4.066 23 N -0.959 5.959 24 Si 0.955 3.045 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.290 1.290 28 C 0.103 3.897 29 H 0.241 0.759 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.051 0.949 39 H 0.117 0.883 40 H 0.380 0.620 41 H 0.247 0.753 42 H 0.095 0.905 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 19.312 -3.401 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.217 4.217 3 C -0.043 4.043 4 C -0.132 4.132 5 C -0.166 4.166 6 C 0.293 3.707 7 O -0.477 6.477 8 N -0.334 5.334 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.146 4.146 12 H 0.173 0.827 13 C 0.396 3.604 14 F -0.177 7.177 15 F -0.168 7.168 16 F -0.167 7.167 17 C 0.046 3.954 18 H 0.080 0.920 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.084 0.916 22 C -0.258 4.258 23 N -0.610 5.610 24 Si 0.786 3.214 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.217 1.217 28 C -0.023 4.023 29 H 0.257 0.743 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.127 0.873 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.135 0.865 40 H 0.216 0.784 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.010 18.762 -3.766 19.782 hybrid contribution -0.810 -1.977 0.442 2.182 sum 4.201 16.785 -3.324 17.619 Atomic orbital electron populations 1.25707 0.97097 1.00521 1.00580 1.23888 0.95941 1.00927 1.00941 1.18838 0.83799 1.00386 1.01321 1.21150 0.94366 0.97926 0.99738 1.21710 0.95999 0.98738 1.00188 1.21391 0.82011 0.85187 0.82144 1.90676 1.56331 1.49811 1.50924 1.48098 1.05571 1.34295 1.45431 1.22053 0.90094 0.91840 0.96821 1.22005 1.00427 0.97309 0.97364 1.22785 0.94807 0.96480 1.00572 0.82725 1.20886 0.81148 0.80028 0.78313 1.93123 1.86097 1.70002 1.68505 1.93136 1.64039 1.73219 1.86374 1.93261 1.80178 1.80862 1.62389 1.20810 0.90818 0.92611 0.91140 0.91980 1.42504 1.61148 1.23834 1.08467 1.19387 1.23718 0.98576 0.94565 0.91587 1.25283 1.02773 1.01963 0.95819 1.69766 1.48678 1.41264 1.01306 0.85480 0.78607 0.81166 0.76138 1.20353 1.22189 1.21723 1.22140 0.97921 0.89757 0.92519 0.74270 0.88218 0.86424 0.92439 0.94936 0.87334 0.84330 0.86531 0.86900 0.93056 0.86455 0.78432 0.94451 0.88745 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.91 19.25 74.32 1.43 -3.48 16 2 C -0.22 -5.24 13.34 31.13 0.42 -4.82 16 3 C -0.01 -0.14 5.70 28.79 0.16 0.03 16 4 C -0.09 -2.43 4.46 30.59 0.14 -2.29 16 5 C -0.13 -2.78 4.05 29.85 0.12 -2.65 16 6 C 0.50 16.82 7.70 87.66 0.68 17.49 16 7 O -0.60 -27.31 15.39 -3.04 -0.05 -27.35 16 8 N -0.60 -16.97 2.90 -818.12 -2.37 -19.35 16 9 C 0.11 1.89 6.35 86.31 0.55 2.44 16 10 C -0.13 -2.88 4.95 30.67 0.15 -2.73 16 11 C -0.13 -3.23 2.02 -10.77 -0.02 -3.25 16 12 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 13 C 0.45 14.20 2.69 71.98 0.19 14.40 16 14 F -0.20 -6.60 16.77 44.97 0.75 -5.85 16 15 F -0.19 -5.06 16.77 44.97 0.75 -4.30 16 16 F -0.19 -7.78 14.40 44.97 0.65 -7.13 16 17 C 0.16 5.49 2.45 45.08 0.11 5.60 16 18 H 0.06 2.28 7.71 -2.39 -0.02 2.26 16 19 N -0.72 -34.31 3.69 -322.51 -1.19 -35.50 16 20 C -0.23 -12.99 9.93 84.03 0.83 -12.15 16 21 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.96 -59.76 13.06 21.65 0.28 -59.47 16 24 Si 0.96 49.05 29.55 68.60 2.03 51.08 16 25 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 27 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 28 C 0.10 3.31 6.03 86.37 0.52 3.83 16 29 H 0.24 3.46 7.80 -4.43 -0.03 3.42 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.11 2.13 7.70 -2.39 -0.02 2.12 16 35 H 0.14 1.66 7.95 -2.39 -0.02 1.64 16 36 H 0.12 1.33 5.97 -2.39 -0.01 1.32 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.58 6.11 -2.39 -0.01 1.56 16 39 H 0.12 1.77 7.76 -2.39 -0.02 1.75 16 40 H 0.38 19.46 4.94 -92.71 -0.46 19.00 16 41 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 2.20 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -82.92 364.28 7.18 -75.74 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.58 Total: 23.16 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.75 Total: 8.98 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -3.28 Total: -114.32 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 9 Polarization: -19.44 SS G_CDS: 2.16 Total: -17.28 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.03 Total: 51.08 kcal Total: -82.92 7.18 -75.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701014721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.710 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds