Wall clock time and date at job start Tue Mar 31 2020 18:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 N 1.46500 * 109.47327 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99684 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00470 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99462 * 179.97438 * 5 4 3 8 8 N 1.46497 * 109.47059 * 179.97438 * 7 5 4 9 9 C 1.34780 * 120.00062 * 179.72804 * 8 7 5 10 10 O 1.21718 * 119.99957 * 359.97438 * 9 8 7 11 11 C 1.46256 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.35022 * 119.99894 * 179.97438 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31506 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00134 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47190 * 90.00207 * 22 20 18 24 24 H 1.48497 * 109.46872 * 210.00189 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00012 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47312 * 300.00294 * 1 2 3 30 30 H 1.08996 * 109.46720 * 60.00484 * 1 2 3 31 31 H 1.08999 * 109.47312 * 239.99705 * 2 1 3 32 32 H 1.09000 * 109.47159 * 119.99665 * 2 1 3 33 33 H 1.08999 * 109.47227 * 59.99654 * 3 2 1 34 34 H 1.09004 * 109.47285 * 299.99899 * 3 2 1 35 35 H 0.97001 * 120.00014 * 359.97438 * 4 3 2 36 36 H 1.08999 * 109.47216 * 59.99762 * 7 5 4 37 37 H 1.09000 * 109.47352 * 299.99662 * 7 5 4 38 38 H 0.97000 * 119.99935 * 359.97438 * 8 7 5 39 39 H 1.08004 * 120.00191 * 359.97438 * 11 9 8 40 40 H 1.08004 * 119.99907 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 43 43 H 0.96998 * 120.00257 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 45 45 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6098 0.0012 6 8 3.5725 3.6601 0.0008 7 6 5.6859 2.6098 0.0025 8 7 6.1742 3.9909 0.0023 9 6 7.4993 4.2372 0.0089 10 8 8.2902 3.3121 0.0153 11 6 7.9868 5.6162 0.0082 12 6 9.3142 5.8629 0.0152 13 6 9.8041 7.2484 0.0151 14 6 8.8961 8.3143 0.0018 15 6 9.3593 9.6100 0.0080 16 6 10.7281 9.8619 0.0148 17 8 11.1799 11.1401 0.0147 18 6 12.5102 11.3189 0.1382 19 1 13.1710 10.4647 0.1493 20 6 13.0303 12.5998 0.2511 21 7 14.3281 12.7742 0.3721 22 14 11.8872 14.0772 0.2313 23 1 11.4645 14.3946 1.6190 24 1 12.5977 15.2449 -0.3490 25 1 10.6909 13.7664 -0.5918 26 6 11.6343 8.8057 0.0223 27 6 11.1803 7.5068 0.0224 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9901 0.6025 0.0013 36 1 6.0499 2.0960 -0.8872 37 1 6.0485 2.0959 0.8927 38 1 5.5439 4.7282 0.0012 39 1 7.2849 6.4371 0.0020 40 1 10.0161 5.0420 0.0218 41 1 7.8338 8.1198 -0.0088 42 1 8.6597 10.4327 0.0022 43 1 14.6919 13.6700 0.4507 44 1 12.6956 9.0059 0.0280 45 1 11.8842 6.6878 0.0286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023788405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:39 Heat of formation + Delta-G solvation = -91.601742 kcal Electronic energy + Delta-G solvation = -25643.786397 eV Core-core repulsion = 21626.097903 eV Total energy + Delta-G solvation = -4017.688494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.27943 -40.94692 -40.21951 -38.59752 -36.92559 -35.47296 -34.76329 -34.19193 -33.64991 -32.00511 -30.45642 -29.12240 -27.45056 -26.55196 -24.34102 -23.76228 -22.59733 -22.08323 -21.60678 -20.73349 -19.78907 -19.16604 -18.60978 -17.74719 -17.38324 -17.14686 -16.75166 -16.37481 -16.25482 -16.25166 -15.79115 -15.59729 -15.46320 -15.38113 -14.94108 -14.41160 -14.31093 -14.22897 -14.03791 -13.88982 -13.82405 -13.39701 -13.25660 -13.17969 -12.94979 -12.73074 -12.62794 -12.35848 -12.04552 -11.93962 -11.75690 -11.30403 -11.16680 -11.15770 -11.07053 -10.67850 -10.28858 -10.11719 -9.91470 -8.74411 -8.53657 -6.25355 -0.28798 0.55475 1.09737 1.32409 1.36964 1.43443 1.52091 1.78312 2.26208 2.33006 2.46951 2.80390 3.00590 3.15439 3.59187 3.80378 3.92079 3.93569 4.05387 4.07255 4.25973 4.32648 4.33643 4.34864 4.40298 4.47748 4.63754 4.66520 4.75274 4.83970 4.85104 5.11567 5.16090 5.19775 5.24536 5.25321 5.28615 5.32445 5.38562 5.44548 5.58494 5.70889 5.80468 5.83573 6.14624 6.39283 6.50095 6.79701 7.07206 7.19418 7.51035 8.57194 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032381 B = 0.001465 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.508363 B =19104.781607 C =19932.599209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.712 5.712 5 C 0.511 3.489 6 O -0.574 6.574 7 C 0.101 3.899 8 N -0.713 5.713 9 C 0.556 3.444 10 O -0.586 6.586 11 C -0.243 4.243 12 C 0.017 3.983 13 C -0.162 4.162 14 C -0.041 4.041 15 C -0.195 4.195 16 C 0.137 3.863 17 O -0.234 6.234 18 C -0.405 4.405 19 H 0.085 0.915 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.261 1.261 26 C -0.243 4.243 27 C -0.043 4.043 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.420 0.580 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.416 0.584 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.163 0.837 42 H 0.137 0.863 43 H 0.286 0.714 44 H 0.115 0.885 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.924 -25.919 -0.762 36.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.365 5.365 5 C 0.297 3.703 6 O -0.454 6.454 7 C -0.026 4.026 8 N -0.367 5.367 9 C 0.348 3.652 10 O -0.469 6.469 11 C -0.264 4.264 12 C -0.003 4.003 13 C -0.163 4.163 14 C -0.059 4.059 15 C -0.214 4.214 16 C 0.086 3.914 17 O -0.140 6.140 18 C -0.480 4.480 19 H 0.103 0.897 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.185 1.185 26 C -0.262 4.262 27 C -0.061 4.061 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.255 0.745 39 H 0.168 0.832 40 H 0.146 0.854 41 H 0.180 0.820 42 H 0.155 0.845 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.795 -25.489 -0.761 36.272 hybrid contribution 0.416 0.770 0.038 0.876 sum -25.379 -24.719 -0.723 35.435 Atomic orbital electron populations 1.21703 0.94423 1.02738 1.02173 1.21692 0.97027 0.93991 1.03821 1.21496 0.78665 0.98865 1.01720 1.45826 1.07907 1.08580 1.74210 1.20676 0.90073 0.84098 0.75406 1.90712 1.70669 1.32683 1.51351 1.21150 0.89975 0.85394 1.06101 1.45553 1.07023 1.08884 1.75241 1.18414 0.81734 0.89831 0.75252 1.90786 1.56216 1.47261 1.52619 1.22726 0.96882 0.95135 1.11618 1.22182 0.95871 0.93992 0.88248 1.18835 0.92931 0.93037 1.11475 1.21358 1.00505 0.89917 0.94126 1.20480 0.91404 0.98659 1.10841 1.19933 0.94301 0.83859 0.93306 1.83465 1.25214 1.23935 1.81387 1.20774 0.79138 0.95869 1.52263 0.89745 1.25293 0.97364 1.00740 0.95096 1.69697 1.12321 1.25064 1.48548 0.85237 0.78791 0.77336 0.79513 1.18997 1.19197 1.18472 1.21230 0.99970 0.93393 1.11602 1.21300 0.95392 0.95395 0.94005 0.91265 0.92593 0.92595 0.90198 0.90206 0.92339 0.92318 0.74257 0.87063 0.87087 0.74528 0.83238 0.85376 0.81964 0.84512 0.90373 0.86752 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 71.98 0.71 0.11 16 2 C -0.13 -0.42 6.05 30.59 0.19 -0.23 16 3 C 0.12 0.98 5.67 86.38 0.49 1.47 16 4 N -0.71 -5.64 5.56 -463.06 -2.57 -8.21 16 5 C 0.51 7.29 7.90 87.66 0.69 7.98 16 6 O -0.57 -12.77 15.67 -3.02 -0.05 -12.82 16 7 C 0.10 1.34 6.15 85.63 0.53 1.86 16 8 N -0.71 -12.95 5.52 -471.24 -2.60 -15.55 16 9 C 0.56 13.01 7.74 86.33 0.67 13.68 16 10 O -0.59 -17.29 16.23 -4.41 -0.07 -17.36 16 11 C -0.24 -5.38 9.41 23.61 0.22 -5.15 16 12 C 0.02 0.43 9.45 23.82 0.23 0.66 16 13 C -0.16 -4.85 5.87 -20.13 -0.12 -4.97 16 14 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 15 C -0.19 -7.01 9.97 22.35 0.22 -6.78 16 16 C 0.14 6.14 6.66 22.72 0.15 6.29 16 17 O -0.23 -12.29 8.57 -20.32 -0.17 -12.46 16 18 C -0.40 -23.23 9.94 67.93 0.68 -22.56 16 19 H 0.09 5.07 5.41 -2.91 -0.02 5.06 16 20 C 0.01 0.83 5.49 84.85 0.47 1.29 16 21 N -0.92 -53.65 13.96 21.62 0.30 -53.34 16 22 Si 0.97 44.18 28.62 68.60 1.96 46.14 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 C -0.24 -10.32 9.14 22.34 0.20 -10.12 16 27 C -0.04 -1.46 9.78 22.55 0.22 -1.24 16 28 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.42 0.68 8.47 -92.71 -0.79 -0.11 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.42 7.17 7.42 -92.71 -0.69 6.48 16 39 H 0.15 2.59 6.07 -2.91 -0.02 2.57 16 40 H 0.13 3.29 7.52 -2.91 -0.02 3.27 16 41 H 0.16 3.35 6.16 -2.91 -0.02 3.33 16 42 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.29 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.11 5.33 5.62 -2.91 -0.02 5.32 16 45 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -73.63 388.36 2.12 -71.51 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.43 Total: 20.79 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 5.76 Total: -18.69 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -4.87 Total: -77.11 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.29 Total: -42.64 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.96 Total: 46.14 kcal Total: -73.63 2.12 -71.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023788405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.089 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds