Wall clock time and date at job start Tue Mar 31 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52990 * 109.47149 * 2 1 4 4 N 1.46500 * 109.47053 * 120.00162 * 2 1 3 5 5 C 1.34781 * 119.99691 * 84.99527 * 4 2 1 6 6 O 1.21278 * 120.00454 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99469 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47066 * 180.02562 * 7 5 4 9 9 C 1.34780 * 120.00068 * 179.72629 * 8 7 5 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47059 * 89.99619 * 22 20 18 24 24 H 1.48498 * 109.47162 * 210.00189 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99719 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.08995 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46578 * 300.00005 * 1 2 3 30 30 H 1.08998 * 109.46911 * 59.99635 * 1 2 3 31 31 H 1.09006 * 109.46578 * 239.99995 * 2 1 3 32 32 H 1.09003 * 109.47029 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47355 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47507 * 60.00043 * 3 2 1 35 35 H 0.97001 * 120.00014 * 264.99713 * 4 2 1 36 36 H 1.09007 * 109.46745 * 60.00818 * 7 5 4 37 37 H 1.09000 * 109.47682 * 300.00440 * 7 5 4 38 38 H 0.97000 * 119.99919 * 0.02562 * 8 7 5 39 39 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 40 40 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 43 43 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 45 45 H 1.07997 * 120.05110 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -2.0323 1.1943 6 8 1.8590 -2.6678 0.2023 7 6 2.6499 -2.7427 2.4246 8 7 2.6995 -4.1845 2.1700 9 6 3.1267 -5.0246 3.1334 10 8 3.4709 -4.5855 4.2152 11 6 3.1768 -6.4640 2.8789 12 6 3.6043 -7.3058 3.8442 13 6 3.6552 -8.7520 3.5884 14 6 3.2553 -9.2600 2.3463 15 6 3.3105 -10.6143 2.1092 16 6 3.7511 -11.4800 3.1059 17 8 3.7979 -12.8141 2.8698 18 6 4.3413 -13.5869 3.8313 19 1 4.6400 -13.1483 4.7719 20 6 4.5168 -14.9454 3.6125 21 7 4.1528 -15.4795 2.4672 22 14 5.2692 -16.0166 4.9453 23 1 4.1927 -16.5490 5.8187 24 1 6.0017 -17.1457 4.3180 25 1 6.2112 -15.2063 5.7585 26 6 4.1441 -10.9803 4.3439 27 6 4.0981 -9.6269 4.5880 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.2492 -0.1824 1.9895 36 1 1.9776 -2.5437 3.2592 37 1 3.6492 -2.3826 2.6692 38 1 2.4291 -4.5341 1.3065 39 1 2.8719 -6.8537 1.9189 40 1 3.9096 -6.9161 4.8041 41 1 2.9083 -8.5894 1.5740 42 1 3.0064 -11.0065 1.1500 43 1 4.2752 -16.4295 2.3144 44 1 4.4856 -11.6558 5.1143 45 1 4.4036 -9.2399 5.5488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023926277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:45 Heat of formation + Delta-G solvation = -68.439149 kcal Electronic energy + Delta-G solvation = -25888.791144 eV Core-core repulsion = 21872.107055 eV Total energy + Delta-G solvation = -4016.684089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52441 -39.38064 -39.04217 -36.89947 -36.54683 -34.47871 -33.20093 -32.32700 -32.15483 -30.41263 -28.92533 -27.75715 -27.41467 -25.62960 -23.32613 -22.21120 -21.88026 -20.99515 -20.71948 -19.51960 -18.31366 -17.58015 -17.18142 -16.88579 -16.49366 -16.16934 -15.67095 -14.94956 -14.94296 -14.75627 -14.44745 -14.37242 -14.13486 -13.81519 -13.57995 -13.53532 -13.27287 -13.01390 -12.88773 -12.84609 -12.63644 -12.56696 -11.92313 -11.92166 -11.74928 -11.70389 -11.50451 -11.11906 -11.06795 -10.66876 -10.52833 -10.36955 -9.88438 -9.66247 -9.60263 -9.48072 -9.23896 -8.84229 -8.36258 -7.09993 -6.63849 -4.18820 1.07388 2.12388 2.15601 2.46735 2.55902 3.04687 3.05680 3.10549 3.31976 3.56593 3.83339 4.14913 4.37869 4.50788 4.52693 4.70345 4.92091 4.94046 4.99697 5.03782 5.06534 5.13629 5.15622 5.25060 5.29723 5.39395 5.55170 5.55829 5.64923 5.69259 5.74321 5.97197 6.03233 6.13466 6.21409 6.47242 6.49590 6.63178 6.80935 6.93400 6.94478 7.14742 7.25320 7.29636 7.52415 7.65748 7.68376 7.81456 8.28679 8.80884 9.47991 10.52764 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037363 B = 0.001489 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.228898 B =18804.102002 C =19401.979329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.725 5.725 5 C 0.510 3.490 6 O -0.533 6.533 7 C 0.102 3.898 8 N -0.723 5.723 9 C 0.560 3.440 10 O -0.561 6.561 11 C -0.282 4.282 12 C 0.040 3.960 13 C -0.200 4.200 14 C -0.042 4.042 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.097 0.903 20 C 0.042 3.958 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.242 4.242 27 C -0.034 4.034 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.403 0.597 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.412 0.588 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 28.627 -1.912 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 C -0.219 4.219 4 N -0.378 5.378 5 C 0.296 3.704 6 O -0.409 6.409 7 C -0.025 4.025 8 N -0.379 5.379 9 C 0.352 3.648 10 O -0.442 6.442 11 C -0.303 4.303 12 C 0.021 3.979 13 C -0.201 4.201 14 C -0.061 4.061 15 C -0.218 4.218 16 C 0.111 3.889 17 O -0.063 6.063 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.189 1.189 26 C -0.262 4.262 27 C -0.053 4.053 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.250 0.750 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.931 28.071 -2.216 28.432 hybrid contribution 0.289 -0.361 0.605 0.761 sum -3.642 27.711 -1.611 27.995 Atomic orbital electron populations 1.22198 0.95046 1.02845 1.02230 1.20985 0.94353 0.92896 0.88649 1.22084 1.01836 0.94851 1.03112 1.46035 1.67794 1.06739 1.17195 1.20665 0.77397 0.82672 0.89625 1.90717 1.49700 1.65719 1.34810 1.20972 1.03277 0.82811 0.95482 1.45595 1.68956 1.05006 1.18294 1.18401 0.75954 0.87285 0.83120 1.90772 1.49815 1.78998 1.24600 1.22376 1.14561 0.91079 1.02261 1.22279 0.86867 0.91590 0.97199 1.18460 1.13702 0.91679 0.96220 1.20909 0.95692 0.94052 0.95420 1.20159 1.10282 0.92157 0.99242 1.19619 0.91720 0.84909 0.92694 1.83906 1.67168 1.12011 1.43264 1.21479 1.40448 0.89504 0.95458 0.88534 1.25389 0.96765 0.96325 0.97951 1.70013 1.42440 1.13305 1.22698 0.85650 0.79095 0.79171 0.79226 1.19642 1.20050 1.18948 1.21095 1.10926 0.95616 0.98526 1.20983 0.94535 0.92643 0.97127 0.91942 0.92392 0.91480 0.89250 0.91843 0.90769 0.91930 0.76258 0.88520 0.88519 0.75041 0.85710 0.85879 0.86319 0.86106 0.91606 0.85122 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.48 37.16 0.35 -0.55 16 2 C 0.14 0.74 3.18 -67.93 -0.22 0.52 16 3 C -0.16 -0.49 9.38 37.15 0.35 -0.15 16 4 N -0.72 -4.02 5.08 -53.80 -0.27 -4.29 16 5 C 0.51 4.40 7.86 -10.98 -0.09 4.31 16 6 O -0.53 -6.47 15.33 5.56 0.09 -6.39 16 7 C 0.10 0.89 6.15 -5.20 -0.03 0.86 16 8 N -0.72 -8.20 5.52 -62.93 -0.35 -8.55 16 9 C 0.56 7.92 7.74 -13.04 -0.10 7.82 16 10 O -0.56 -9.43 16.23 5.17 0.08 -9.35 16 11 C -0.28 -3.96 9.41 -37.50 -0.35 -4.31 16 12 C 0.04 0.62 9.45 -37.20 -0.35 0.27 16 13 C -0.20 -3.44 5.87 -105.03 -0.62 -4.06 16 14 C -0.04 -0.74 9.40 -39.14 -0.37 -1.11 16 15 C -0.20 -4.04 9.97 -39.46 -0.39 -4.44 16 16 C 0.17 3.87 6.66 -38.89 -0.26 3.61 16 17 O -0.16 -4.45 9.74 0.73 0.01 -4.44 16 18 C -0.39 -10.50 9.48 30.91 0.29 -10.21 16 19 H 0.10 2.37 5.18 -52.49 -0.27 2.09 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16 22 Si 0.94 19.59 29.55 -169.99 -5.02 14.57 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.24 -5.04 9.14 -39.47 -0.36 -5.40 16 27 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.65 7.58 -51.93 -0.39 0.26 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.19 8.14 -51.92 -0.42 -0.24 16 34 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.40 1.14 8.60 -40.82 -0.35 0.79 16 36 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.50 7.42 -40.82 -0.30 4.20 16 39 H 0.13 1.57 6.07 -52.48 -0.32 1.25 16 40 H 0.12 1.84 7.52 -52.48 -0.39 1.45 16 41 H 0.12 1.71 6.16 -52.48 -0.32 1.39 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 44 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -32.88 388.62 -7.49 -40.37 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.01 Total: 8.25 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.62 Total: -12.83 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.14 Total: -36.02 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.18 Total: -20.18 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.88 -7.49 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023926277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.074 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds