Wall clock time and date at job start Tue Mar 31 2020 18:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52990 * 109.47149 * 2 1 4 4 N 1.46500 * 109.47053 * 120.00162 * 2 1 3 5 5 C 1.34781 * 119.99691 * 84.99527 * 4 2 1 6 6 O 1.21278 * 120.00454 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99469 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47066 * 180.02562 * 7 5 4 9 9 C 1.34780 * 120.00068 * 179.72629 * 8 7 5 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47059 * 89.99619 * 22 20 18 24 24 H 1.48498 * 109.47162 * 210.00189 * 22 20 18 25 25 H 1.48500 * 109.46752 * 329.99719 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.08995 * 109.46830 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46578 * 300.00005 * 1 2 3 30 30 H 1.08998 * 109.46911 * 59.99635 * 1 2 3 31 31 H 1.09006 * 109.46578 * 239.99995 * 2 1 3 32 32 H 1.09003 * 109.47029 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47355 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47507 * 60.00043 * 3 2 1 35 35 H 0.97001 * 120.00014 * 264.99713 * 4 2 1 36 36 H 1.09007 * 109.46745 * 60.00818 * 7 5 4 37 37 H 1.09000 * 109.47682 * 300.00440 * 7 5 4 38 38 H 0.97000 * 119.99919 * 0.02562 * 8 7 5 39 39 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 40 40 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 41 41 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 43 43 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 45 45 H 1.07997 * 120.05110 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -2.0323 1.1943 6 8 1.8590 -2.6678 0.2023 7 6 2.6499 -2.7427 2.4246 8 7 2.6995 -4.1845 2.1700 9 6 3.1267 -5.0246 3.1334 10 8 3.4709 -4.5855 4.2152 11 6 3.1768 -6.4640 2.8789 12 6 3.6043 -7.3058 3.8442 13 6 3.6552 -8.7520 3.5884 14 6 3.2553 -9.2600 2.3463 15 6 3.3105 -10.6143 2.1092 16 6 3.7511 -11.4800 3.1059 17 8 3.7979 -12.8141 2.8698 18 6 4.3413 -13.5869 3.8313 19 1 4.6400 -13.1483 4.7719 20 6 4.5168 -14.9454 3.6125 21 7 4.1528 -15.4795 2.4672 22 14 5.2692 -16.0166 4.9453 23 1 4.1927 -16.5490 5.8187 24 1 6.0017 -17.1457 4.3180 25 1 6.2112 -15.2063 5.7585 26 6 4.1441 -10.9803 4.3439 27 6 4.0981 -9.6269 4.5880 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.2492 -0.1824 1.9895 36 1 1.9776 -2.5437 3.2592 37 1 3.6492 -2.3826 2.6692 38 1 2.4291 -4.5341 1.3065 39 1 2.8719 -6.8537 1.9189 40 1 3.9096 -6.9161 4.8041 41 1 2.9083 -8.5894 1.5740 42 1 3.0064 -11.0065 1.1500 43 1 4.2752 -16.4295 2.3144 44 1 4.4856 -11.6558 5.1143 45 1 4.4036 -9.2399 5.5488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023926277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:44 Heat of formation + Delta-G solvation = -91.488601 kcal Electronic energy + Delta-G solvation = -25889.790643 eV Core-core repulsion = 21872.107055 eV Total energy + Delta-G solvation = -4017.683588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.31363 -40.84841 -40.25265 -38.49725 -37.14176 -35.45674 -34.73418 -33.99765 -32.76013 -31.96549 -30.15270 -28.51664 -28.10217 -27.43233 -24.60743 -23.69904 -22.65638 -21.92967 -21.59256 -20.79648 -19.85705 -18.89937 -18.62140 -17.65735 -17.49471 -16.93922 -16.61601 -16.40728 -16.22888 -15.93668 -15.71099 -15.60244 -15.34394 -15.08262 -14.81531 -14.62676 -14.25761 -14.09228 -14.04518 -13.59443 -13.53912 -13.29089 -13.22015 -13.14122 -13.05863 -12.70123 -12.56905 -12.31082 -12.20868 -12.12388 -11.92774 -11.21256 -11.12943 -11.11073 -11.04977 -10.58785 -10.28116 -10.11750 -9.88977 -8.68368 -8.51721 -6.18178 -0.25358 0.58865 1.12785 1.36271 1.45012 1.46608 1.53630 1.79493 2.15797 2.34450 2.47548 2.86805 3.18131 3.42487 3.58471 3.81934 3.94935 3.96540 4.09246 4.12404 4.26842 4.31677 4.33619 4.34643 4.41428 4.49306 4.66436 4.73210 4.74987 4.92965 4.94778 5.00271 5.02995 5.19788 5.24011 5.26640 5.29886 5.32303 5.36321 5.48229 5.58637 5.63952 5.81827 5.97616 6.10806 6.42373 6.50175 6.92507 7.10474 7.19662 7.69568 8.70362 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037363 B = 0.001489 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.228898 B =18804.102002 C =19401.979329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.154 4.154 4 N -0.709 5.709 5 C 0.512 3.488 6 O -0.573 6.573 7 C 0.101 3.899 8 N -0.714 5.714 9 C 0.558 3.442 10 O -0.586 6.586 11 C -0.251 4.251 12 C 0.022 3.978 13 C -0.172 4.172 14 C -0.039 4.039 15 C -0.208 4.208 16 C 0.130 3.870 17 O -0.221 6.221 18 C -0.418 4.418 19 H 0.107 0.893 20 C -0.018 4.018 21 N -0.914 5.914 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.252 1.252 26 C -0.248 4.248 27 C -0.037 4.037 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.419 0.581 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.416 0.584 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.126 0.874 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 32.971 -0.757 33.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.211 4.211 4 N -0.362 5.362 5 C 0.299 3.701 6 O -0.453 6.453 7 C -0.026 4.026 8 N -0.368 5.368 9 C 0.349 3.651 10 O -0.469 6.469 11 C -0.271 4.271 12 C 0.002 3.998 13 C -0.173 4.173 14 C -0.057 4.057 15 C -0.227 4.227 16 C 0.078 3.922 17 O -0.126 6.126 18 C -0.493 4.493 19 H 0.124 0.876 20 C -0.217 4.217 21 N -0.551 5.551 22 Si 0.838 3.162 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.175 1.175 26 C -0.267 4.267 27 C -0.055 4.055 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.254 0.746 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.174 0.826 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.144 0.856 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.887 32.547 -1.048 32.795 hybrid contribution 0.150 -0.988 0.168 1.013 sum -3.737 31.559 -0.880 31.792 Atomic orbital electron populations 1.22166 0.94963 1.01431 1.03403 1.21051 0.94401 0.94085 0.87645 1.22036 1.01859 0.93003 1.04231 1.45957 1.66387 1.05876 1.17944 1.20668 0.77045 0.83447 0.88980 1.90708 1.51749 1.66697 1.36112 1.21157 1.04471 0.81162 0.95851 1.45561 1.67313 1.06150 1.17738 1.18379 0.76066 0.87497 0.83141 1.90776 1.51005 1.79392 1.25687 1.22698 1.10794 0.91232 1.02393 1.22185 0.89041 0.90221 0.98305 1.18795 1.10177 0.92852 0.95476 1.21290 0.94731 0.93154 0.96541 1.20407 1.10175 0.93242 0.98892 1.20187 0.93140 0.84403 0.94508 1.83888 1.70489 1.13755 1.44430 1.21920 1.41174 0.90228 0.96019 0.87610 1.26617 0.97133 0.97476 1.00445 1.70152 1.45884 1.13633 1.25422 0.84580 0.78437 0.77056 0.76140 1.18749 1.19595 1.17523 1.21209 1.10874 0.97027 0.97636 1.21330 0.93968 0.91337 0.98894 0.94550 0.91193 0.90405 0.91414 0.91725 0.89986 0.90504 0.74405 0.87160 0.87136 0.74621 0.83740 0.85075 0.82635 0.86128 0.91612 0.85610 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 71.99 0.68 -0.82 16 2 C 0.13 1.19 3.18 44.99 0.14 1.34 16 3 C -0.15 -0.52 9.38 71.98 0.68 0.16 16 4 N -0.71 -6.15 5.08 -442.52 -2.25 -8.40 16 5 C 0.51 7.74 7.86 87.66 0.69 8.43 16 6 O -0.57 -13.19 15.33 -3.02 -0.05 -13.23 16 7 C 0.10 1.44 6.15 85.63 0.53 1.96 16 8 N -0.71 -13.89 5.52 -471.23 -2.60 -16.49 16 9 C 0.56 13.73 7.74 86.33 0.67 14.40 16 10 O -0.59 -17.71 16.23 -4.41 -0.07 -17.78 16 11 C -0.25 -5.98 9.41 23.61 0.22 -5.76 16 12 C 0.02 0.60 9.45 23.82 0.23 0.82 16 13 C -0.17 -5.43 5.87 -20.13 -0.12 -5.55 16 14 C -0.04 -1.28 9.40 22.55 0.21 -1.07 16 15 C -0.21 -8.52 9.97 22.35 0.22 -8.30 16 16 C 0.13 6.26 6.66 22.72 0.15 6.41 16 17 O -0.22 -12.91 9.74 -20.32 -0.20 -13.11 16 18 C -0.42 -23.64 9.48 67.93 0.64 -23.00 16 19 H 0.11 5.45 5.18 -2.91 -0.02 5.44 16 20 C -0.02 -0.99 5.49 84.85 0.47 -0.53 16 21 N -0.91 -54.78 13.67 21.62 0.30 -54.49 16 22 Si 1.02 41.64 29.55 68.60 2.03 43.67 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 26 C -0.25 -10.45 9.14 22.34 0.20 -10.24 16 27 C -0.04 -1.26 9.78 22.55 0.22 -1.04 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.94 7.58 -2.38 -0.02 0.92 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.42 1.03 8.60 -92.71 -0.80 0.24 16 36 H 0.11 1.34 8.14 -2.38 -0.02 1.33 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.42 7.83 7.42 -92.71 -0.69 7.14 16 39 H 0.15 2.89 6.07 -2.91 -0.02 2.87 16 40 H 0.13 3.41 7.52 -2.91 -0.02 3.39 16 41 H 0.16 3.85 6.16 -2.91 -0.02 3.83 16 42 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.13 5.32 5.62 -2.91 -0.02 5.30 16 45 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -76.75 388.62 2.55 -74.20 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.44 Total: 28.42 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 5.84 Total: -22.79 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -4.55 Total: -79.38 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.32 Total: -44.13 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -76.75 2.55 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023926277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.284 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds