Wall clock time and date at job start Tue Mar 31 2020 17:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35998 * 117.00124 * 2 1 4 4 C 1.38162 * 119.99673 * 359.72030 * 3 2 1 5 5 C 1.39753 * 119.84289 * 179.77211 * 4 3 2 6 6 C 1.43201 * 120.07857 * 180.26153 * 5 4 3 7 7 N 5.84103 * 81.26317 * 359.97438 * 2 1 3 8 8 C 1.39733 * 119.84599 * 0.52670 * 5 4 3 9 9 C 1.37820 * 119.99771 * 359.73203 * 8 5 4 10 10 C 1.38801 * 120.15228 * 359.97438 * 9 8 5 11 11 O 1.35846 * 119.92614 * 180.02562 * 10 9 8 12 12 C 1.42904 * 116.99273 * 0.02562 * 11 10 9 13 13 C 1.50700 * 109.46645 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00271 * 354.92048 * 13 12 11 15 15 N 1.34785 * 119.99783 * 174.92241 * 13 12 11 16 16 C 1.46503 * 119.99862 * 185.39545 * 15 13 12 17 17 C 1.50700 * 109.46943 * 89.99893 * 16 15 13 18 18 H 1.08003 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99795 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00068 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47023 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46756 * 119.99949 * 21 19 17 24 24 H 1.48497 * 109.47345 * 240.00229 * 21 19 17 25 25 C 1.46500 * 119.99944 * 5.39479 * 15 13 12 26 26 C 1.53000 * 109.47190 * 124.25148 * 25 15 13 27 27 C 1.52999 * 109.46680 * 244.25038 * 25 15 13 28 28 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47385 * 59.99737 * 1 2 3 30 30 H 1.08998 * 109.47173 * 300.00175 * 1 2 3 31 31 H 1.07995 * 120.07871 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00419 * 179.70202 * 8 5 4 33 33 H 1.07991 * 119.92227 * 179.97438 * 9 8 5 34 34 H 1.08998 * 109.47233 * 300.00027 * 12 11 10 35 35 H 1.08996 * 109.47252 * 60.00381 * 12 11 10 36 36 H 1.08999 * 109.46892 * 209.99708 * 16 15 13 37 37 H 1.08996 * 109.47051 * 329.99935 * 16 15 13 38 38 H 0.97002 * 119.99551 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47297 * 4.24658 * 25 15 13 40 40 H 1.08994 * 109.47164 * 55.63468 * 26 25 15 41 41 H 1.08996 * 109.47182 * 175.64006 * 26 25 15 42 42 H 1.09000 * 109.46426 * 295.63894 * 26 25 15 43 43 H 1.09000 * 109.47966 * 64.58855 * 27 25 15 44 44 H 1.09000 * 109.46891 * 184.58561 * 27 25 15 45 45 H 1.08999 * 109.47565 * 304.58304 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2939 2.3704 -0.0058 5 6 1.9317 3.6139 -0.0010 6 6 1.1566 4.8181 -0.0014 7 7 0.5417 5.7732 -0.0026 8 6 3.3275 3.6796 -0.0014 9 6 4.0718 2.5197 -0.0010 10 6 3.4383 1.2847 0.0003 11 8 4.1765 0.1443 0.0013 12 6 5.5979 0.2918 0.0013 13 6 6.2441 -1.0697 0.0030 14 8 5.5589 -2.0660 0.0971 15 7 7.5834 -1.1800 -0.0999 16 6 8.2025 -2.5026 -0.2173 17 6 8.3124 -2.8784 -1.6726 18 1 7.9563 -2.2001 -2.4339 19 6 8.8676 -4.0881 -2.0322 20 7 9.3017 -4.9139 -1.1052 21 14 9.0032 -4.5543 -3.8361 22 1 8.4474 -3.4607 -4.6730 23 1 10.4304 -4.7682 -4.1860 24 1 8.2401 -5.8040 -4.0831 25 6 8.4201 0.0226 -0.0944 26 6 9.4611 -0.0855 1.0216 27 6 9.1301 0.1559 -1.4431 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 0.2153 2.3153 -0.0100 32 1 3.8230 4.6392 -0.0026 33 1 5.1505 2.5718 -0.0018 34 1 5.9064 0.8397 -0.8890 35 1 5.9062 0.8409 0.8910 36 1 9.1972 -2.4790 0.2279 37 1 7.5891 -3.2384 0.3026 38 1 9.6926 -5.7648 -1.3583 39 1 7.7951 0.8992 0.0754 40 1 10.0355 -1.0032 0.8950 41 1 10.1321 0.7723 0.9768 42 1 8.9572 -0.1026 1.9880 43 1 8.3913 0.3146 -2.2287 44 1 9.8142 1.0039 -1.4112 45 1 9.6908 -0.7556 -1.6503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053235487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:02 Heat of formation + Delta-G solvation = -45.412262 kcal Electronic energy + Delta-G solvation = -28098.279779 eV Core-core repulsion = 24082.594211 eV Total energy + Delta-G solvation = -4015.685568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95979 -39.52416 -38.36206 -37.79502 -36.23150 -35.91099 -32.89606 -31.05496 -30.96790 -30.80404 -29.04341 -27.61187 -26.90187 -26.58047 -23.78459 -23.10091 -22.37939 -21.35259 -19.75635 -18.56776 -18.23305 -17.09590 -16.72198 -16.63241 -16.35413 -16.26681 -15.67485 -15.36087 -14.91994 -14.55304 -14.27994 -14.16948 -13.98501 -13.91617 -13.66079 -13.50967 -13.10043 -12.85124 -12.73631 -12.50861 -12.43462 -12.22432 -11.84301 -11.67668 -11.62125 -11.52841 -11.35513 -11.25175 -11.13383 -10.95685 -10.90165 -10.64562 -10.44208 -10.05982 -9.58143 -9.18671 -9.00072 -8.45364 -8.13125 -7.75503 -6.07151 -4.10807 0.46198 0.93324 2.36471 2.62966 2.69633 3.00247 3.23441 3.27893 3.36612 3.39915 3.50829 3.56798 3.91151 4.37989 4.43313 4.51177 4.71389 4.75528 4.83906 4.94480 4.97148 5.00987 5.12493 5.14315 5.20246 5.27618 5.30685 5.46498 5.51006 5.53158 5.74440 5.88771 5.94318 6.05543 6.12258 6.16680 6.26730 6.51214 6.76516 6.89428 7.03267 7.18679 7.29572 7.41575 7.49029 7.89483 8.19962 8.29367 8.83838 8.98569 9.53526 11.01005 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.002782 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.069771 B =10061.678879 C =10945.932742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.101 3.899 4 C -0.128 4.128 5 C -0.041 4.041 6 C 0.263 3.737 7 N -0.426 5.426 8 C -0.057 4.057 9 C -0.183 4.183 10 C 0.144 3.856 11 O -0.267 6.267 12 C 0.035 3.965 13 C 0.509 3.491 14 O -0.515 6.515 15 N -0.589 5.589 16 C 0.245 3.755 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.893 5.893 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.132 3.868 26 C -0.163 4.163 27 C -0.163 4.163 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 16.657 3.739 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C 0.055 3.945 4 C -0.149 4.149 5 C -0.045 4.045 6 C -0.052 4.052 7 N -0.102 5.102 8 C -0.078 4.078 9 C -0.202 4.202 10 C 0.095 3.905 11 O -0.178 6.178 12 C -0.043 4.043 13 C 0.293 3.707 14 O -0.390 6.390 15 N -0.324 5.324 16 C 0.127 3.873 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.028 3.972 26 C -0.221 4.221 27 C -0.221 4.221 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.313 16.974 3.816 20.224 hybrid contribution 0.334 -0.330 -1.066 1.164 sum -9.979 16.644 2.751 19.600 Atomic orbital electron populations 1.23145 0.78374 1.04569 1.01100 1.86337 1.21079 1.24720 1.88539 1.17993 0.89031 0.85357 1.02125 1.20959 1.00251 0.89774 1.03919 1.15565 0.91614 0.86708 1.10624 1.25600 0.93335 0.92851 0.93390 1.81261 1.08644 1.10691 1.09584 1.20843 0.91186 0.98788 0.97012 1.21054 1.01109 0.90345 1.07697 1.18687 0.88633 0.86484 0.96668 1.86324 1.17734 1.26896 1.86820 1.22853 0.79235 0.99146 1.03116 1.19615 0.83096 0.89129 0.78853 1.90738 1.61920 1.38206 1.48117 1.48273 1.04050 1.09281 1.70747 1.19331 0.93436 0.77104 0.97443 1.21465 1.39832 1.02764 0.92058 0.92211 1.24928 0.95478 0.96084 0.97623 1.69939 1.40963 1.09849 1.32500 0.86486 0.77526 0.78640 0.85043 1.19778 1.21027 1.20913 1.21026 0.92688 0.87229 0.96270 1.22164 0.99096 1.03070 0.97797 1.22222 1.00721 1.03154 0.96036 0.87768 0.92586 0.92608 0.83867 0.84411 0.83456 0.89162 0.89312 0.94301 0.93747 0.92772 0.91251 0.90811 0.92065 0.92828 0.92964 0.93000 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.29 -3.73 10.27 -34.41 -0.35 -4.08 16 3 C 0.10 1.16 6.69 -39.18 -0.26 0.90 16 4 C -0.13 -1.12 8.74 -39.04 -0.34 -1.46 16 5 C -0.04 -0.35 5.74 -106.85 -0.61 -0.97 16 6 C 0.26 2.58 15.33 -22.47 -0.34 2.23 16 7 N -0.43 -5.09 18.54 41.84 0.78 -4.31 16 8 C -0.06 -0.43 9.74 -39.18 -0.38 -0.81 16 9 C -0.18 -1.59 9.01 -39.53 -0.36 -1.95 16 10 C 0.14 1.75 6.71 -38.95 -0.26 1.49 16 11 O -0.27 -4.22 9.44 -46.92 -0.44 -4.67 16 12 C 0.04 0.49 3.54 36.01 0.13 0.62 16 13 C 0.51 10.16 7.73 -10.98 -0.08 10.07 16 14 O -0.51 -13.02 16.06 -14.31 -0.23 -13.25 16 15 N -0.59 -11.51 2.39 -167.47 -0.40 -11.91 16 16 C 0.25 6.03 4.73 -5.19 -0.02 6.00 16 17 C -0.52 -13.94 7.71 -34.44 -0.27 -14.20 16 18 H 0.06 1.59 7.59 -52.48 -0.40 1.19 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 21 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C 0.13 1.90 3.12 -67.93 -0.21 1.69 16 26 C -0.16 -2.15 9.19 37.16 0.34 -1.80 16 27 C -0.16 -2.38 8.74 37.16 0.32 -2.06 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.14 0.95 6.28 -52.49 -0.33 0.62 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.15 0.95 6.27 -52.49 -0.33 0.62 16 34 H 0.09 1.02 7.36 -51.93 -0.38 0.64 16 35 H 0.09 0.92 7.24 -51.93 -0.38 0.55 16 36 H 0.04 0.96 6.13 -51.93 -0.32 0.64 16 37 H 0.04 1.27 7.35 -51.93 -0.38 0.88 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.07 0.75 5.85 -51.93 -0.30 0.44 16 40 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.59 6.60 -51.93 -0.34 1.24 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -34.84 382.27 -6.59 -41.43 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.96 Total: -2.71 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.46 Total: 2.48 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 1.11 Total: -41.20 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.03 Total: -22.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.84 -6.59 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053235487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.979 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds