Wall clock time and date at job start Tue Mar 31 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46679 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99606 * 269.99853 * 4 3 2 6 6 H 1.08000 * 120.00191 * 145.65152 * 5 4 3 7 7 C 1.38955 * 120.00087 * 325.64456 * 5 4 3 8 8 N 1.31407 * 119.99987 * 337.22397 * 7 5 4 9 9 Si 1.86800 * 119.99648 * 157.22537 * 7 5 4 10 10 H 1.48498 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46910 * 120.00265 * 9 7 5 12 12 H 1.48500 * 109.47377 * 239.99949 * 9 7 5 13 13 C 1.34773 * 119.99795 * 90.00474 * 4 3 2 14 14 O 1.21289 * 120.00147 * 355.04748 * 13 4 3 15 15 C 1.50704 * 119.99371 * 175.05289 * 13 4 3 16 16 N 1.46503 * 109.46612 * 183.61073 * 15 13 4 17 17 C 1.40214 * 120.51221 * 90.00352 * 16 15 13 18 18 C 1.38508 * 120.73935 * 15.45196 * 17 16 15 19 19 C 1.38279 * 119.81389 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.20150 * 0.03173 * 19 18 17 21 21 C 1.38317 * 120.26112 * 359.96886 * 20 19 18 22 22 C 1.38397 * 119.86961 * 0.02562 * 21 20 19 23 23 O 1.35982 * 120.66588 * 180.09981 * 22 21 20 24 24 C 1.42998 * 116.71842 * 147.15481 * 23 22 21 25 25 H 1.08998 * 109.44467 * 166.44033 * 24 23 22 26 26 C 1.52999 * 109.44337 * 286.34027 * 24 23 22 27 27 C 1.35095 * 120.50398 * 269.71903 * 16 15 13 28 28 O 1.21293 * 120.13905 * 1.66798 * 27 16 15 29 29 H 1.09005 * 109.47007 * 299.99724 * 1 2 3 30 30 H 1.08998 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47496 * 59.99514 * 1 2 3 32 32 H 1.08995 * 109.47496 * 120.00486 * 2 1 3 33 33 H 1.09005 * 109.46571 * 240.00588 * 2 1 3 34 34 H 1.08999 * 109.47356 * 300.00033 * 3 2 1 35 35 H 1.08996 * 109.47234 * 60.00326 * 3 2 1 36 36 H 0.97007 * 119.99627 * 184.74233 * 8 7 5 37 37 H 1.08998 * 109.47500 * 303.60353 * 15 13 4 38 38 H 1.08995 * 109.47288 * 63.60959 * 15 13 4 39 39 H 1.08004 * 120.08814 * 0.05314 * 18 17 16 40 40 H 1.08001 * 119.90144 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.87391 * 179.97438 * 20 19 18 42 42 H 1.07996 * 120.06499 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.47172 * 59.99821 * 26 24 23 44 44 H 1.08997 * 109.47083 * 179.97438 * 26 24 23 45 45 H 1.08998 * 109.47148 * 300.00053 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4423 1.1864 6 1 5.1296 0.9145 1.2676 7 6 3.6783 2.1213 2.2851 8 7 2.8216 3.1022 2.1102 9 14 4.2073 1.6395 4.0107 10 1 5.1730 0.5140 3.9363 11 1 4.8522 2.8016 4.6733 12 1 3.0175 1.2206 4.7944 13 6 4.1783 1.4427 -1.1681 14 8 3.5748 1.3523 -2.2163 15 6 5.6811 1.5552 -1.1710 16 7 6.1633 1.6192 -2.5530 17 6 6.3075 2.8547 -3.2001 18 6 6.3102 4.0363 -2.4776 19 6 6.4532 5.2442 -3.1354 20 6 6.5926 5.2748 -4.5108 21 6 6.5907 4.0983 -5.2380 22 6 6.4482 2.8856 -4.5866 23 8 6.4461 1.7190 -5.2853 24 6 7.0054 0.5769 -4.6314 25 1 6.7324 -0.3249 -5.1794 26 6 8.5294 0.7072 -4.5936 27 6 6.4811 0.4891 -3.2214 28 8 6.3405 -0.5924 -2.6905 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.5166 3.6211 2.8710 37 1 5.9789 2.4594 -0.6402 38 1 6.1116 0.6848 -0.6759 39 1 6.2013 4.0143 -1.4032 40 1 6.4559 6.1664 -2.5734 41 1 6.7035 6.2212 -5.0193 42 1 6.7003 4.1259 -6.3121 43 1 8.8034 1.6097 -4.0470 44 1 8.9562 -0.1629 -4.0948 45 1 8.9142 0.7681 -5.6115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:57 Heat of formation + Delta-G solvation = -66.290299 kcal Electronic energy + Delta-G solvation = -29833.095428 eV Core-core repulsion = 25816.504520 eV Total energy + Delta-G solvation = -4016.590908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.48452 -38.87996 -38.41573 -37.43120 -35.55858 -34.75685 -32.83763 -31.95585 -31.41011 -30.20303 -29.55225 -27.86465 -25.79909 -24.69227 -23.91653 -23.26158 -22.22781 -20.71094 -19.29685 -19.04751 -18.98008 -17.38785 -17.04641 -16.19400 -15.88379 -15.53172 -15.31168 -15.03897 -14.68137 -14.50393 -14.26747 -14.12388 -13.87680 -13.78083 -13.59949 -13.09023 -12.93221 -12.56993 -12.51237 -12.47309 -12.13885 -11.89826 -11.64501 -11.56499 -11.36845 -11.20561 -11.04479 -11.02815 -10.92980 -10.70007 -10.47186 -10.31189 -10.28527 -9.76030 -9.62285 -9.20239 -8.64577 -8.45283 -7.59956 -7.53574 -6.47998 -4.15132 1.25629 1.40315 2.56550 2.73350 3.02764 3.15892 3.19739 3.42376 3.79448 3.81702 4.01824 4.15027 4.69713 4.77078 4.77740 4.88217 4.89347 5.07301 5.22286 5.35262 5.43758 5.48543 5.62861 5.71563 5.79240 5.80561 5.84954 5.87152 5.95543 6.01254 6.17463 6.23615 6.29956 6.49589 6.55011 6.57149 6.60885 6.68845 6.76775 6.83957 7.09777 7.13759 7.28087 7.46245 7.55835 7.83116 8.01929 8.29069 8.97681 9.41847 9.85983 10.52117 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.004167 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.795979 B = 6717.161452 C = 7149.793360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.432 5.432 5 C -0.349 4.349 6 H 0.090 0.910 7 C 0.049 3.951 8 N -0.853 5.853 9 Si 0.913 3.087 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.455 3.545 14 O -0.594 6.594 15 C 0.106 3.894 16 N -0.527 5.527 17 C 0.118 3.882 18 C -0.123 4.123 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.113 4.113 22 C 0.077 3.923 23 O -0.300 6.300 24 C 0.081 3.919 25 H 0.146 0.854 26 C -0.175 4.175 27 C 0.496 3.504 28 O -0.509 6.509 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.109 0.891 36 H 0.272 0.728 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 2.779 -8.516 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.151 5.151 5 C -0.476 4.476 6 H 0.107 0.893 7 C -0.158 4.158 8 N -0.489 5.489 9 Si 0.739 3.261 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.242 3.758 14 O -0.479 6.479 15 C -0.018 4.018 16 N -0.249 5.249 17 C 0.023 3.977 18 C -0.144 4.144 19 C -0.128 4.128 20 C -0.140 4.140 21 C -0.132 4.132 22 C 0.031 3.969 23 O -0.215 6.215 24 C 0.022 3.978 25 H 0.164 0.836 26 C -0.232 4.232 27 C 0.284 3.716 28 O -0.383 6.383 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.205 2.107 -8.727 12.162 hybrid contribution 0.097 -0.238 1.354 1.379 sum 8.302 1.868 -7.372 11.259 Atomic orbital electron populations 1.21651 0.96602 1.00445 1.01313 1.21808 0.94638 0.99404 1.01347 1.21503 0.81118 0.94817 1.03548 1.43428 1.04884 1.62619 1.04147 1.19480 1.07813 1.33048 0.87272 0.89267 1.25345 0.96362 0.93850 1.00278 1.69859 1.31234 1.15845 1.31984 0.86098 0.78865 0.78970 0.82162 1.19051 1.20595 1.20336 1.20449 0.89011 0.81917 0.84445 1.90558 1.69748 1.55749 1.31849 1.21434 0.95145 1.05461 0.79764 1.45310 1.60683 1.04307 1.14622 1.18109 1.02207 0.86503 0.90892 1.20829 1.02349 0.90525 1.00668 1.20950 1.00164 0.97246 0.94439 1.20893 1.01866 0.97336 0.93951 1.20430 1.02935 0.89493 1.00378 1.18564 1.03405 0.86899 0.88041 1.86241 1.78064 1.15367 1.41783 1.22820 0.94871 0.89927 0.90191 0.83641 1.22334 0.92943 1.03791 1.04176 1.21244 0.77874 0.83961 0.88518 1.90739 1.51664 1.26788 1.69104 0.92996 0.93626 0.93204 0.92298 0.93017 0.93034 0.87301 0.91792 0.87107 0.87496 0.84550 0.85292 0.85327 0.84847 0.91551 0.90067 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.13 -2.89 6.26 -26.73 -0.17 -3.05 16 3 C 0.11 2.77 4.97 -4.04 -0.02 2.75 16 4 N -0.43 -10.94 2.54 -114.81 -0.29 -11.23 16 5 C -0.35 -8.60 8.62 -14.93 -0.13 -8.72 16 6 H 0.09 2.12 7.11 -52.49 -0.37 1.74 16 7 C 0.05 1.18 4.95 -17.47 -0.09 1.09 16 8 N -0.85 -21.54 11.32 55.50 0.63 -20.91 16 9 Si 0.91 18.76 29.61 -169.99 -5.03 13.72 16 10 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.45 11.42 7.69 -10.99 -0.08 11.33 16 14 O -0.59 -16.54 16.06 5.55 0.09 -16.45 16 15 C 0.11 2.22 4.38 -5.19 -0.02 2.20 16 16 N -0.53 -10.27 2.21 -114.52 -0.25 -10.52 16 17 C 0.12 2.07 6.39 -83.49 -0.53 1.54 16 18 C -0.12 -1.95 9.36 -39.47 -0.37 -2.32 16 19 C -0.11 -1.40 10.04 -39.55 -0.40 -1.80 16 20 C -0.12 -1.41 10.04 -39.54 -0.40 -1.80 16 21 C -0.11 -1.46 10.00 -39.49 -0.39 -1.86 16 22 C 0.08 1.23 5.85 -39.09 -0.23 1.00 16 23 O -0.30 -4.75 10.18 -19.68 -0.20 -4.95 16 24 C 0.08 1.19 3.82 -27.89 -0.11 1.08 16 25 H 0.15 1.85 8.14 -51.93 -0.42 1.42 16 26 C -0.17 -1.92 9.28 37.16 0.34 -1.57 16 27 C 0.50 9.48 6.90 -10.85 -0.07 9.40 16 28 O -0.51 -11.12 16.77 5.55 0.09 -11.02 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.31 7.49 -51.93 -0.39 0.92 16 35 H 0.11 2.76 5.34 -51.93 -0.28 2.48 16 36 H 0.27 6.44 8.32 -40.82 -0.34 6.10 16 37 H 0.11 2.13 5.89 -51.93 -0.31 1.82 16 38 H 0.11 2.23 7.04 -51.93 -0.37 1.87 16 39 H 0.14 2.17 6.12 -52.48 -0.32 1.85 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -31.83 372.90 -7.87 -39.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.22 Total: 8.94 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -2.30 Total: 7.10 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.08 Total: -42.67 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.02 Total: -32.42 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.83 -7.87 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.591 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds