Wall clock time and date at job start Tue Mar 31 2020 18:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46679 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99606 * 269.99853 * 4 3 2 6 6 H 1.08000 * 120.00191 * 145.65152 * 5 4 3 7 7 C 1.38955 * 120.00087 * 325.64456 * 5 4 3 8 8 N 1.31407 * 119.99987 * 337.22397 * 7 5 4 9 9 Si 1.86800 * 119.99648 * 157.22537 * 7 5 4 10 10 H 1.48498 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46910 * 120.00265 * 9 7 5 12 12 H 1.48500 * 109.47377 * 239.99949 * 9 7 5 13 13 C 1.34773 * 119.99795 * 90.00474 * 4 3 2 14 14 O 1.21289 * 120.00147 * 355.04748 * 13 4 3 15 15 C 1.50704 * 119.99371 * 175.05289 * 13 4 3 16 16 N 1.46503 * 109.46612 * 183.61073 * 15 13 4 17 17 C 1.40214 * 120.51221 * 90.00352 * 16 15 13 18 18 C 1.38508 * 120.73935 * 15.45196 * 17 16 15 19 19 C 1.38279 * 119.81389 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.20150 * 0.03173 * 19 18 17 21 21 C 1.38317 * 120.26112 * 359.96886 * 20 19 18 22 22 C 1.38397 * 119.86961 * 0.02562 * 21 20 19 23 23 O 1.35982 * 120.66588 * 180.09981 * 22 21 20 24 24 C 1.42998 * 116.71842 * 147.15481 * 23 22 21 25 25 H 1.08998 * 109.44467 * 166.44033 * 24 23 22 26 26 C 1.52999 * 109.44337 * 286.34027 * 24 23 22 27 27 C 1.35095 * 120.50398 * 269.71903 * 16 15 13 28 28 O 1.21293 * 120.13905 * 1.66798 * 27 16 15 29 29 H 1.09005 * 109.47007 * 299.99724 * 1 2 3 30 30 H 1.08998 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47496 * 59.99514 * 1 2 3 32 32 H 1.08995 * 109.47496 * 120.00486 * 2 1 3 33 33 H 1.09005 * 109.46571 * 240.00588 * 2 1 3 34 34 H 1.08999 * 109.47356 * 300.00033 * 3 2 1 35 35 H 1.08996 * 109.47234 * 60.00326 * 3 2 1 36 36 H 0.97007 * 119.99627 * 184.74233 * 8 7 5 37 37 H 1.08998 * 109.47500 * 303.60353 * 15 13 4 38 38 H 1.08995 * 109.47288 * 63.60959 * 15 13 4 39 39 H 1.08004 * 120.08814 * 0.05314 * 18 17 16 40 40 H 1.08001 * 119.90144 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.87391 * 179.97438 * 20 19 18 42 42 H 1.07996 * 120.06499 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.47172 * 59.99821 * 26 24 23 44 44 H 1.08997 * 109.47083 * 179.97438 * 26 24 23 45 45 H 1.08998 * 109.47148 * 300.00053 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4423 1.1864 6 1 5.1296 0.9145 1.2676 7 6 3.6783 2.1213 2.2851 8 7 2.8216 3.1022 2.1102 9 14 4.2073 1.6395 4.0107 10 1 5.1730 0.5140 3.9363 11 1 4.8522 2.8016 4.6733 12 1 3.0175 1.2206 4.7944 13 6 4.1783 1.4427 -1.1681 14 8 3.5748 1.3523 -2.2163 15 6 5.6811 1.5552 -1.1710 16 7 6.1633 1.6192 -2.5530 17 6 6.3075 2.8547 -3.2001 18 6 6.3102 4.0363 -2.4776 19 6 6.4532 5.2442 -3.1354 20 6 6.5926 5.2748 -4.5108 21 6 6.5907 4.0983 -5.2380 22 6 6.4482 2.8856 -4.5866 23 8 6.4461 1.7190 -5.2853 24 6 7.0054 0.5769 -4.6314 25 1 6.7324 -0.3249 -5.1794 26 6 8.5294 0.7072 -4.5936 27 6 6.4811 0.4891 -3.2214 28 8 6.3405 -0.5924 -2.6905 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.5166 3.6211 2.8710 37 1 5.9789 2.4594 -0.6402 38 1 6.1116 0.6848 -0.6759 39 1 6.2013 4.0143 -1.4032 40 1 6.4559 6.1664 -2.5734 41 1 6.7035 6.2212 -5.0193 42 1 6.7003 4.1259 -6.3121 43 1 8.8034 1.6097 -4.0470 44 1 8.9562 -0.1629 -4.0948 45 1 8.9142 0.7681 -5.6115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:55 Heat of formation + Delta-G solvation = -84.726136 kcal Electronic energy + Delta-G solvation = -29833.894866 eV Core-core repulsion = 25816.504520 eV Total energy + Delta-G solvation = -4017.390346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.77720 -40.60790 -39.88592 -38.67356 -37.26107 -36.43421 -34.61572 -33.34773 -33.01747 -31.31683 -30.90651 -29.25898 -27.59721 -26.39973 -25.15368 -24.52806 -23.47860 -22.43698 -21.16532 -20.32003 -20.25639 -19.08863 -18.52928 -17.91897 -17.22038 -16.94035 -16.60182 -16.47952 -16.31156 -16.12080 -15.83561 -15.61727 -15.43602 -15.18338 -15.01032 -14.58175 -14.22740 -14.13894 -13.84723 -13.47897 -13.42248 -13.30230 -13.16467 -13.11568 -12.87739 -12.85383 -12.67310 -12.46524 -12.17223 -12.16241 -12.09434 -12.05255 -11.76075 -11.61078 -11.09479 -11.01641 -10.48205 -9.64209 -9.56347 -8.84826 -8.37655 -6.12526 0.08826 0.30947 1.16610 1.34839 1.42800 1.47207 1.58952 1.87866 2.25732 2.26940 2.68768 2.89541 2.92363 3.00780 3.62574 3.71820 3.80937 3.98609 4.04523 4.07392 4.18582 4.20653 4.28108 4.30135 4.44782 4.47624 4.48439 4.58356 4.66055 4.71095 4.74970 4.88799 4.97552 5.01281 5.02086 5.13010 5.25891 5.27258 5.32510 5.37757 5.50167 5.53401 5.71394 5.88760 5.89435 6.30872 6.34547 6.59137 7.03504 7.45036 7.90578 8.63998 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.004167 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.795979 B = 6717.161452 C = 7149.793360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.440 5.440 5 C -0.369 4.369 6 H 0.094 0.906 7 C 0.016 3.984 8 N -0.880 5.880 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.272 1.272 12 H -0.276 1.276 13 C 0.439 3.561 14 O -0.631 6.631 15 C 0.118 3.882 16 N -0.533 5.533 17 C 0.079 3.921 18 C -0.142 4.142 19 C -0.109 4.109 20 C -0.103 4.103 21 C -0.109 4.109 22 C 0.060 3.940 23 O -0.307 6.307 24 C 0.084 3.916 25 H 0.162 0.838 26 C -0.163 4.163 27 C 0.482 3.518 28 O -0.553 6.553 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.278 0.722 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.156 0.844 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.870 4.162 -9.017 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.157 5.157 5 C -0.495 4.495 6 H 0.111 0.889 7 C -0.189 4.189 8 N -0.516 5.516 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.197 1.197 12 H -0.202 1.202 13 C 0.228 3.772 14 O -0.520 6.520 15 C -0.006 4.006 16 N -0.255 5.255 17 C -0.014 4.014 18 C -0.162 4.162 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.128 4.128 22 C 0.014 3.986 23 O -0.222 6.222 24 C 0.025 3.975 25 H 0.179 0.821 26 C -0.220 4.220 27 C 0.272 3.728 28 O -0.431 6.431 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.174 0.826 41 H 0.190 0.810 42 H 0.181 0.819 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.248 3.531 -9.239 13.541 hybrid contribution -0.260 -0.520 1.474 1.584 sum 8.988 3.011 -7.765 12.254 Atomic orbital electron populations 1.21598 0.93292 1.02396 1.01865 1.21710 0.97518 0.97064 1.00027 1.21485 0.81196 0.96308 1.01905 1.43695 1.05337 1.62022 1.04646 1.19747 1.08450 1.33930 0.87420 0.88864 1.26132 0.96066 0.93152 1.03522 1.69936 1.31885 1.16439 1.33354 0.85058 0.78469 0.78808 0.77172 1.18645 1.19700 1.20172 1.21133 0.90725 0.81456 0.83880 1.90503 1.70931 1.57540 1.32979 1.21164 0.92263 1.05543 0.81666 1.45370 1.60474 1.05653 1.14017 1.18458 1.04991 0.85980 0.91989 1.20953 1.03455 0.91485 1.00312 1.21331 0.98929 0.96928 0.95518 1.21418 0.98763 0.98664 0.93300 1.20897 1.01360 0.88553 1.01942 1.18948 1.04183 0.87922 0.87530 1.86211 1.78660 1.15640 1.41700 1.23017 0.96982 0.90330 0.87157 0.82055 1.22299 0.89922 1.03760 1.06042 1.22243 0.77157 0.83245 0.90165 1.90693 1.53788 1.28107 1.70462 0.92088 0.90968 0.92992 0.92565 0.95194 0.95192 0.88048 0.91236 0.86015 0.88128 0.85909 0.82623 0.80956 0.81859 0.92214 0.89378 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.91 71.98 0.71 -3.97 16 2 C -0.12 -5.55 6.26 30.59 0.19 -5.36 16 3 C 0.11 5.82 4.97 86.38 0.43 6.25 16 4 N -0.44 -23.24 2.54 -635.53 -1.62 -24.86 16 5 C -0.37 -18.66 8.62 84.04 0.72 -17.93 16 6 H 0.09 4.55 7.11 -2.91 -0.02 4.53 16 7 C 0.02 0.79 4.95 84.93 0.42 1.21 16 8 N -0.88 -44.80 11.32 21.66 0.25 -44.56 16 9 Si 0.98 38.15 29.61 68.60 2.03 40.18 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 12 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 13 C 0.44 23.35 7.69 87.66 0.67 24.03 16 14 O -0.63 -37.28 16.06 -3.06 -0.05 -37.33 16 15 C 0.12 5.28 4.38 85.63 0.37 5.66 16 16 N -0.53 -21.84 2.21 -634.42 -1.40 -23.24 16 17 C 0.08 2.85 6.39 38.14 0.24 3.09 16 18 C -0.14 -4.53 9.36 22.34 0.21 -4.32 16 19 C -0.11 -2.56 10.04 22.29 0.22 -2.34 16 20 C -0.10 -2.00 10.04 22.30 0.22 -1.78 16 21 C -0.11 -2.49 10.00 22.33 0.22 -2.27 16 22 C 0.06 1.87 5.85 22.59 0.13 2.00 16 23 O -0.31 -9.55 10.18 -93.35 -0.95 -10.50 16 24 C 0.08 2.45 3.82 29.84 0.11 2.57 16 25 H 0.16 4.07 8.14 -2.39 -0.02 4.05 16 26 C -0.16 -3.37 9.28 71.98 0.67 -2.70 16 27 C 0.48 19.28 6.90 87.60 0.60 19.88 16 28 O -0.55 -25.60 16.77 -3.07 -0.05 -25.65 16 29 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.03 1.61 7.49 -2.39 -0.02 1.59 16 35 H 0.10 5.30 5.34 -2.39 -0.01 5.29 16 36 H 0.28 13.12 8.32 -92.70 -0.77 12.34 16 37 H 0.12 5.01 5.89 -2.39 -0.01 4.99 16 38 H 0.10 4.52 7.04 -2.39 -0.02 4.50 16 39 H 0.12 4.11 6.12 -2.91 -0.02 4.10 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.06 1.32 7.81 -2.38 -0.02 1.30 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.91 372.90 5.38 -67.53 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 1.01 Total: 34.40 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 6.17 Total: 24.02 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -2.77 Total: -92.65 kcal Atomic # 8 Polarization: -72.42 SS G_CDS: -1.05 Total: -73.48 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -72.91 5.38 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.197 kcal (2) G-P(sol) polarization free energy of solvation -72.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds