Wall clock time and date at job start Tue Mar 31 2020 18:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47016 * 2 1 4 4 N 1.46509 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99817 * 269.99611 * 4 3 2 6 6 H 1.07999 * 119.99886 * 143.16337 * 5 4 3 7 7 C 1.38956 * 120.00369 * 323.16018 * 5 4 3 8 8 N 1.31409 * 119.99582 * 338.18825 * 7 5 4 9 9 Si 1.86798 * 120.00066 * 158.18798 * 7 5 4 10 10 H 1.48494 * 109.47114 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47053 * 120.00336 * 9 7 5 12 12 H 1.48504 * 109.46748 * 239.99849 * 9 7 5 13 13 C 1.34766 * 119.99904 * 90.00072 * 4 3 2 14 14 O 1.21293 * 120.00548 * 354.74314 * 13 4 3 15 15 C 1.50703 * 120.00076 * 174.74794 * 13 4 3 16 16 O 1.42901 * 109.47135 * 182.14151 * 15 13 4 17 17 C 1.35973 * 116.99800 * 182.00944 * 16 15 13 18 18 C 1.38745 * 119.98669 * 5.41352 * 17 16 15 19 19 C 1.38076 * 120.03190 * 180.02562 * 18 17 16 20 20 C 1.38992 * 119.93331 * 359.71571 * 19 18 17 21 21 C 1.38697 * 119.96258 * 0.55575 * 20 19 18 22 22 C 1.38075 * 120.05289 * 359.46788 * 21 20 19 23 23 C 1.50663 * 119.80989 * 179.70160 * 21 20 19 24 24 C 1.52903 * 109.54095 * 325.80466 * 23 21 20 25 25 C 1.50502 * 109.90789 * 48.64049 * 24 23 21 26 26 O 1.21293 * 119.61815 * 144.76854 * 25 24 23 27 27 N 1.34557 * 120.75668 * 324.73478 * 25 24 23 28 28 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47573 * 300.00094 * 1 2 3 30 30 H 1.08995 * 109.47066 * 60.00532 * 1 2 3 31 31 H 1.08994 * 109.47372 * 239.99260 * 2 1 3 32 32 H 1.09005 * 109.46546 * 119.99527 * 2 1 3 33 33 H 1.09006 * 109.47665 * 59.99897 * 3 2 1 34 34 H 1.09005 * 109.47517 * 299.99505 * 3 2 1 35 35 H 0.97005 * 119.99925 * 185.04942 * 8 7 5 36 36 H 1.08996 * 109.46979 * 62.13965 * 15 13 4 37 37 H 1.09003 * 109.47112 * 302.13976 * 15 13 4 38 38 H 1.08008 * 119.98072 * 359.97438 * 18 17 16 39 39 H 1.07999 * 120.01033 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.00491 * 180.27000 * 22 21 20 41 41 H 1.08997 * 109.45849 * 205.78652 * 23 21 20 42 42 H 1.08995 * 109.44596 * 85.81887 * 23 21 20 43 43 H 1.08995 * 109.39716 * 288.50769 * 24 23 21 44 44 H 1.08999 * 109.39946 * 168.76956 * 24 23 21 45 45 H 0.97007 * 119.77759 * 180.85431 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.4427 1.1882 6 1 5.1082 0.8819 1.2821 7 6 3.7029 2.1644 2.2711 8 7 2.8688 3.1607 2.0749 9 14 4.2337 1.7184 4.0056 10 1 5.1713 0.5679 3.9559 11 1 4.9119 2.8824 4.6305 12 1 3.0403 1.3508 4.8094 13 6 4.1793 1.4423 -1.1662 14 8 3.5772 1.3459 -2.2147 15 6 5.6816 1.5617 -1.1684 16 8 6.1554 1.5878 -2.5163 17 6 7.5017 1.6507 -2.6962 18 6 8.3519 1.5732 -1.6025 19 6 9.7192 1.6375 -1.7841 20 6 10.2431 1.7740 -3.0642 21 6 9.3918 1.8570 -4.1559 22 6 8.0246 1.7931 -3.9732 23 6 9.9633 2.0117 -5.5414 24 6 11.2354 2.8576 -5.4783 25 6 12.1397 2.3430 -4.3909 26 8 13.3423 2.3786 -4.5444 27 7 11.6293 1.8446 -3.2500 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.5859 3.7108 2.8222 36 1 6.1147 0.7079 -0.6474 37 1 5.9736 2.4822 -0.6627 38 1 7.9439 1.4634 -0.6085 39 1 10.3806 1.5776 -0.9324 40 1 7.3625 1.8534 -4.8243 41 1 9.2319 2.5030 -6.1831 42 1 10.2007 1.0286 -5.9478 43 1 10.9709 3.8941 -5.2689 44 1 11.7537 2.8039 -6.4357 45 1 12.2255 1.5282 -2.5533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:02 Heat of formation + Delta-G solvation = -90.305718 kcal Electronic energy + Delta-G solvation = -27860.064003 eV Core-core repulsion = 23842.431708 eV Total energy + Delta-G solvation = -4017.632294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11191 -39.66614 -38.60099 -37.49512 -35.20095 -34.54222 -34.14749 -32.92123 -31.47779 -30.39735 -29.09839 -27.66996 -25.73475 -24.89502 -24.28098 -22.86669 -22.52202 -20.87852 -19.56184 -19.08124 -18.10992 -17.66275 -17.24170 -16.95935 -16.08588 -15.86281 -15.64226 -15.05683 -14.96089 -14.74611 -14.38221 -14.18493 -13.82626 -13.81834 -13.69836 -13.51893 -13.20189 -12.89462 -12.74151 -12.45756 -12.24101 -11.95882 -11.72346 -11.53962 -11.49586 -11.37442 -11.07866 -11.03488 -10.86623 -10.76185 -10.43080 -10.39370 -10.22980 -9.91267 -9.81639 -9.26618 -8.95674 -8.55099 -7.65171 -7.62087 -6.54445 -4.24973 1.13924 1.23172 2.37876 2.88433 2.97946 3.11044 3.13408 3.28724 3.67924 3.72424 3.97330 4.18316 4.42188 4.53648 4.72099 4.78113 4.84989 4.92406 5.01952 5.12420 5.30353 5.44916 5.52996 5.58133 5.71174 5.71995 5.75517 5.83066 5.86979 5.94482 6.02861 6.06772 6.13884 6.35641 6.43679 6.49385 6.50298 6.61434 6.63816 6.76308 7.00745 7.02789 7.20993 7.36821 7.64166 7.76844 7.80819 8.20282 8.90607 9.32985 9.76653 10.46638 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002600 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.662259 B =10765.615598 C =12044.945491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.117 3.883 4 N -0.432 5.432 5 C -0.354 4.354 6 H 0.089 0.911 7 C 0.050 3.950 8 N -0.852 5.852 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.471 3.529 14 O -0.586 6.586 15 C 0.061 3.939 16 O -0.291 6.291 17 C 0.130 3.870 18 C -0.182 4.182 19 C -0.104 4.104 20 C 0.103 3.897 21 C -0.083 4.083 22 C -0.122 4.122 23 C -0.076 4.076 24 C -0.137 4.137 25 C 0.521 3.479 26 O -0.540 6.540 27 N -0.658 5.658 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.273 0.727 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.844 -1.955 -6.332 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.151 5.151 5 C -0.482 4.482 6 H 0.107 0.893 7 C -0.157 4.157 8 N -0.488 5.488 9 Si 0.740 3.260 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.258 3.742 14 O -0.471 6.471 15 C -0.017 4.017 16 O -0.202 6.202 17 C 0.082 3.918 18 C -0.202 4.202 19 C -0.125 4.125 20 C 0.008 3.992 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.113 4.113 24 C -0.177 4.177 25 C 0.309 3.691 26 O -0.417 6.417 27 N -0.303 5.303 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.785 -1.788 -7.119 12.232 hybrid contribution 0.538 -0.286 1.842 1.941 sum 10.323 -2.073 -5.276 11.778 Atomic orbital electron populations 1.21659 0.96529 1.00523 1.01414 1.21820 0.94733 0.99284 1.01422 1.21477 0.80737 0.94880 1.03549 1.43341 1.04879 1.62999 1.03905 1.19443 1.09906 1.30975 0.87869 0.89305 1.25397 0.96205 0.93728 1.00405 1.69865 1.32059 1.14167 1.32660 0.86086 0.78862 0.78917 0.82151 1.19045 1.20546 1.20275 1.19805 0.87743 0.82069 0.84572 1.90572 1.69811 1.55069 1.31661 1.22460 0.95537 1.03074 0.80646 1.86179 1.17413 1.87343 1.29301 1.19082 0.83443 0.95477 0.93788 1.21257 0.93189 1.06355 0.99351 1.20571 0.95065 1.02101 0.94723 1.17443 0.82237 1.05664 0.93827 1.19147 0.92303 1.03189 0.93953 1.20084 0.93401 1.04889 0.95689 1.20427 0.96121 1.01029 0.93771 1.21681 0.95869 1.01842 0.98325 1.20734 0.88924 0.76406 0.83009 1.90767 1.15751 1.55437 1.79736 1.43515 1.05824 1.61498 1.19501 0.93569 0.92985 0.93094 0.92839 0.92234 0.87621 0.92711 0.91673 0.90379 0.89230 0.84258 0.85247 0.84361 0.88759 0.89753 0.87805 0.87419 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.66 6.26 -26.73 -0.17 -2.83 16 3 C 0.12 2.68 4.97 -4.04 -0.02 2.66 16 4 N -0.43 -10.35 2.52 -114.81 -0.29 -10.64 16 5 C -0.35 -8.30 8.58 -14.93 -0.13 -8.43 16 6 H 0.09 1.95 7.15 -52.49 -0.38 1.57 16 7 C 0.05 1.18 4.95 -17.47 -0.09 1.09 16 8 N -0.85 -21.07 11.43 55.50 0.63 -20.44 16 9 Si 0.91 18.01 29.61 -169.99 -5.03 12.98 16 10 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 13 C 0.47 11.20 7.69 -10.99 -0.08 11.12 16 14 O -0.59 -15.54 16.14 -14.36 -0.23 -15.77 16 15 C 0.06 1.17 3.99 36.01 0.14 1.32 16 16 O -0.29 -5.52 9.67 -39.56 -0.38 -5.90 16 17 C 0.13 1.97 6.68 -39.22 -0.26 1.71 16 18 C -0.18 -2.40 9.06 -39.45 -0.36 -2.76 16 19 C -0.10 -1.16 9.92 -39.36 -0.39 -1.55 16 20 C 0.10 1.13 6.51 -83.66 -0.54 0.59 16 21 C -0.08 -0.91 5.65 -104.53 -0.59 -1.50 16 22 C -0.12 -1.56 9.62 -39.46 -0.38 -1.94 16 23 C -0.08 -0.61 5.99 -27.95 -0.17 -0.78 16 24 C -0.14 -1.12 6.08 -28.03 -0.17 -1.29 16 25 C 0.52 5.82 7.72 -11.18 -0.09 5.73 16 26 O -0.54 -7.84 17.91 5.55 0.10 -7.74 16 27 N -0.66 -6.70 5.37 -9.96 -0.05 -6.75 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.11 2.55 5.48 -51.93 -0.28 2.27 16 34 H 0.05 1.31 7.50 -51.93 -0.39 0.92 16 35 H 0.27 6.34 8.32 -40.82 -0.34 6.00 16 36 H 0.08 1.35 6.80 -51.93 -0.35 1.00 16 37 H 0.09 1.68 7.96 -51.93 -0.41 1.26 16 38 H 0.14 1.76 6.28 -52.48 -0.33 1.43 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.09 0.60 8.06 -51.93 -0.42 0.19 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.41 3.54 8.84 -40.82 -0.36 3.18 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -30.56 375.20 -8.81 -39.37 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.29 Total: 8.08 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.92 Total: 1.15 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.29 Total: -37.83 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.51 Total: -29.41 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.56 -8.81 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.936 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds