Wall clock time and date at job start Tue Mar 31 2020 18:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47016 * 2 1 4 4 N 1.46509 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99817 * 269.99611 * 4 3 2 6 6 H 1.07999 * 119.99886 * 143.16337 * 5 4 3 7 7 C 1.38956 * 120.00369 * 323.16018 * 5 4 3 8 8 N 1.31409 * 119.99582 * 338.18825 * 7 5 4 9 9 Si 1.86798 * 120.00066 * 158.18798 * 7 5 4 10 10 H 1.48494 * 109.47114 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47053 * 120.00336 * 9 7 5 12 12 H 1.48504 * 109.46748 * 239.99849 * 9 7 5 13 13 C 1.34766 * 119.99904 * 90.00072 * 4 3 2 14 14 O 1.21293 * 120.00548 * 354.74314 * 13 4 3 15 15 C 1.50703 * 120.00076 * 174.74794 * 13 4 3 16 16 O 1.42901 * 109.47135 * 182.14151 * 15 13 4 17 17 C 1.35973 * 116.99800 * 182.00944 * 16 15 13 18 18 C 1.38745 * 119.98669 * 5.41352 * 17 16 15 19 19 C 1.38076 * 120.03190 * 180.02562 * 18 17 16 20 20 C 1.38992 * 119.93331 * 359.71571 * 19 18 17 21 21 C 1.38697 * 119.96258 * 0.55575 * 20 19 18 22 22 C 1.38075 * 120.05289 * 359.46788 * 21 20 19 23 23 C 1.50663 * 119.80989 * 179.70160 * 21 20 19 24 24 C 1.52903 * 109.54095 * 325.80466 * 23 21 20 25 25 C 1.50502 * 109.90789 * 48.64049 * 24 23 21 26 26 O 1.21293 * 119.61815 * 144.76854 * 25 24 23 27 27 N 1.34557 * 120.75668 * 324.73478 * 25 24 23 28 28 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47573 * 300.00094 * 1 2 3 30 30 H 1.08995 * 109.47066 * 60.00532 * 1 2 3 31 31 H 1.08994 * 109.47372 * 239.99260 * 2 1 3 32 32 H 1.09005 * 109.46546 * 119.99527 * 2 1 3 33 33 H 1.09006 * 109.47665 * 59.99897 * 3 2 1 34 34 H 1.09005 * 109.47517 * 299.99505 * 3 2 1 35 35 H 0.97005 * 119.99925 * 185.04942 * 8 7 5 36 36 H 1.08996 * 109.46979 * 62.13965 * 15 13 4 37 37 H 1.09003 * 109.47112 * 302.13976 * 15 13 4 38 38 H 1.08008 * 119.98072 * 359.97438 * 18 17 16 39 39 H 1.07999 * 120.01033 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.00491 * 180.27000 * 22 21 20 41 41 H 1.08997 * 109.45849 * 205.78652 * 23 21 20 42 42 H 1.08995 * 109.44596 * 85.81887 * 23 21 20 43 43 H 1.08995 * 109.39716 * 288.50769 * 24 23 21 44 44 H 1.08999 * 109.39946 * 168.76956 * 24 23 21 45 45 H 0.97007 * 119.77759 * 180.85431 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.4427 1.1882 6 1 5.1082 0.8819 1.2821 7 6 3.7029 2.1644 2.2711 8 7 2.8688 3.1607 2.0749 9 14 4.2337 1.7184 4.0056 10 1 5.1713 0.5679 3.9559 11 1 4.9119 2.8824 4.6305 12 1 3.0403 1.3508 4.8094 13 6 4.1793 1.4423 -1.1662 14 8 3.5772 1.3459 -2.2147 15 6 5.6816 1.5617 -1.1684 16 8 6.1554 1.5878 -2.5163 17 6 7.5017 1.6507 -2.6962 18 6 8.3519 1.5732 -1.6025 19 6 9.7192 1.6375 -1.7841 20 6 10.2431 1.7740 -3.0642 21 6 9.3918 1.8570 -4.1559 22 6 8.0246 1.7931 -3.9732 23 6 9.9633 2.0117 -5.5414 24 6 11.2354 2.8576 -5.4783 25 6 12.1397 2.3430 -4.3909 26 8 13.3423 2.3786 -4.5444 27 7 11.6293 1.8446 -3.2500 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.5859 3.7108 2.8222 36 1 6.1147 0.7079 -0.6474 37 1 5.9736 2.4822 -0.6627 38 1 7.9439 1.4634 -0.6085 39 1 10.3806 1.5776 -0.9324 40 1 7.3625 1.8534 -4.8243 41 1 9.2319 2.5030 -6.1831 42 1 10.2007 1.0286 -5.9478 43 1 10.9709 3.8941 -5.2689 44 1 11.7537 2.8039 -6.4357 45 1 12.2255 1.5282 -2.5533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:01 Heat of formation + Delta-G solvation = -107.360637 kcal Electronic energy + Delta-G solvation = -27860.803559 eV Core-core repulsion = 23842.431708 eV Total energy + Delta-G solvation = -4018.371851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.02895 -40.99322 -40.10891 -38.70271 -36.99000 -35.60486 -34.91977 -34.56773 -33.28408 -31.34804 -30.23388 -28.99823 -27.44744 -26.14158 -25.47977 -23.80616 -23.52863 -22.45979 -21.19238 -20.26872 -19.13843 -18.95371 -18.56961 -17.98853 -17.50400 -17.16424 -17.03373 -16.47336 -16.31087 -15.92447 -15.80992 -15.36368 -15.34200 -15.03562 -14.75386 -14.57692 -14.31046 -14.12707 -13.95481 -13.75580 -13.38245 -13.22815 -13.17182 -12.99617 -12.81419 -12.62878 -12.47967 -12.41000 -12.26987 -12.01314 -11.99043 -11.81258 -11.52162 -11.15054 -11.07047 -10.98476 -10.41037 -9.87105 -9.50907 -8.65442 -8.34126 -6.11156 0.18280 0.27613 1.40048 1.48707 1.51148 1.62284 1.84622 1.98096 2.07224 2.33743 2.72065 3.00104 3.15080 3.41783 3.68689 3.75353 3.89583 4.03774 4.12318 4.18858 4.23993 4.24644 4.33288 4.35973 4.39976 4.41198 4.55860 4.77700 4.80584 4.88670 4.92348 4.94994 4.96695 5.08877 5.11241 5.18278 5.20880 5.35407 5.37499 5.42632 5.55575 5.58837 5.75615 5.95116 6.12528 6.34734 6.47082 6.96342 7.07696 7.49119 7.93640 8.68514 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002600 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.662259 B =10765.615598 C =12044.945491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.115 3.885 4 N -0.440 5.440 5 C -0.368 4.368 6 H 0.104 0.896 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.982 3.018 10 H -0.254 1.254 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.452 3.548 14 O -0.625 6.625 15 C 0.077 3.923 16 O -0.319 6.319 17 C 0.095 3.905 18 C -0.187 4.187 19 C -0.100 4.100 20 C 0.106 3.894 21 C -0.080 4.080 22 C -0.126 4.126 23 C -0.074 4.074 24 C -0.133 4.133 25 C 0.517 3.483 26 O -0.577 6.577 27 N -0.652 5.652 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.276 0.724 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.355 -2.569 -5.815 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.008 4.008 4 N -0.159 5.159 5 C -0.495 4.495 6 H 0.121 0.879 7 C -0.192 4.192 8 N -0.522 5.522 9 Si 0.806 3.194 10 H -0.177 1.177 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.241 3.759 14 O -0.513 6.513 15 C 0.000 4.000 16 O -0.232 6.232 17 C 0.049 3.951 18 C -0.207 4.207 19 C -0.120 4.120 20 C 0.012 3.988 21 C -0.082 4.082 22 C -0.145 4.145 23 C -0.110 4.110 24 C -0.172 4.172 25 C 0.308 3.692 26 O -0.456 6.456 27 N -0.297 5.297 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.159 0.841 39 H 0.174 0.826 40 H 0.161 0.839 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.134 0.866 44 H 0.144 0.856 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 11.307 -2.412 -6.589 13.307 hybrid contribution 0.139 -0.055 1.625 1.632 sum 11.446 -2.466 -4.964 12.718 Atomic orbital electron populations 1.21618 0.93663 1.02402 1.01752 1.21714 0.97228 0.96731 1.00619 1.21466 0.80904 0.96651 1.01760 1.43626 1.05334 1.62451 1.04447 1.19842 1.10543 1.31352 0.87739 0.87865 1.26219 0.96033 0.93157 1.03832 1.69967 1.33235 1.15151 1.33861 0.85043 0.78424 0.78848 0.77122 1.17742 1.20390 1.20536 1.20581 0.89797 0.81536 0.83965 1.90524 1.71102 1.56812 1.32813 1.22158 0.92418 1.03829 0.81630 1.86114 1.19937 1.88556 1.28608 1.19413 0.82088 0.98166 0.95442 1.21323 0.93882 1.06555 0.98903 1.20810 0.94513 1.00896 0.95774 1.17567 0.82583 1.04711 0.93971 1.19436 0.91453 1.01738 0.95589 1.20241 0.94353 1.04826 0.95079 1.20521 0.96371 1.01937 0.92216 1.21744 0.95244 1.02192 0.98034 1.21298 0.88789 0.75665 0.83486 1.90756 1.17427 1.57013 1.80424 1.43502 1.05518 1.60977 1.19682 0.90888 0.92467 0.92964 0.94190 0.92261 0.88772 0.94866 0.91448 0.88516 0.89030 0.84056 0.82615 0.83903 0.86666 0.88704 0.86634 0.85635 0.74628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.91 71.98 0.71 -3.64 16 2 C -0.12 -4.99 6.26 30.59 0.19 -4.80 16 3 C 0.12 5.48 4.97 86.38 0.43 5.91 16 4 N -0.44 -21.61 2.52 -635.53 -1.60 -23.22 16 5 C -0.37 -17.21 8.58 84.04 0.72 -16.49 16 6 H 0.10 4.43 7.15 -2.91 -0.02 4.41 16 7 C 0.01 0.57 4.95 84.93 0.42 0.99 16 8 N -0.89 -44.24 11.43 21.66 0.25 -43.99 16 9 Si 0.98 36.11 29.61 68.60 2.03 38.14 16 10 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 11 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 12 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 13 C 0.45 22.24 7.69 87.66 0.67 22.92 16 14 O -0.62 -34.59 16.14 15.96 0.26 -34.34 16 15 C 0.08 3.05 3.99 71.24 0.28 3.34 16 16 O -0.32 -12.43 9.67 -74.21 -0.72 -13.14 16 17 C 0.09 2.87 6.68 22.51 0.15 3.02 16 18 C -0.19 -4.77 9.06 22.35 0.20 -4.57 16 19 C -0.10 -2.01 9.92 22.41 0.22 -1.79 16 20 C 0.11 2.12 6.51 38.12 0.25 2.37 16 21 C -0.08 -1.59 5.65 -19.80 -0.11 -1.70 16 22 C -0.13 -3.14 9.62 22.35 0.22 -2.93 16 23 C -0.07 -0.97 5.99 29.80 0.18 -0.79 16 24 C -0.13 -1.78 6.08 29.75 0.18 -1.60 16 25 C 0.52 10.49 7.72 87.63 0.68 11.17 16 26 O -0.58 -15.94 17.91 -3.07 -0.05 -16.00 16 27 N -0.65 -11.84 5.37 -303.93 -1.63 -13.47 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.09 4.69 5.48 -2.38 -0.01 4.68 16 34 H 0.03 1.67 7.50 -2.38 -0.02 1.65 16 35 H 0.28 12.89 8.32 -92.70 -0.77 12.12 16 36 H 0.10 3.36 6.80 -2.39 -0.02 3.34 16 37 H 0.09 3.50 7.96 -2.39 -0.02 3.48 16 38 H 0.14 3.45 6.28 -2.91 -0.02 3.43 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.12 1.10 8.06 -2.39 -0.02 1.09 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.42 6.34 8.84 -92.70 -0.82 5.53 16 Total: -1.00 -67.66 375.20 4.13 -63.53 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.20 Total: 31.07 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.40 Total: 11.42 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.99 Total: -80.68 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.52 Total: -63.48 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -67.66 4.13 -63.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.832 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds