Wall clock time and date at job start Tue Mar 31 2020 18:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46957 * 2 1 4 4 N 1.46502 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99692 * 264.75020 * 4 3 2 6 6 H 1.07991 * 120.00073 * 146.16479 * 5 4 3 7 7 C 1.38954 * 120.00082 * 326.16390 * 5 4 3 8 8 N 1.31409 * 119.99786 * 337.68540 * 7 5 4 9 9 Si 1.86797 * 120.00052 * 157.68565 * 7 5 4 10 10 H 1.48500 * 109.47141 * 60.00108 * 9 7 5 11 11 H 1.48493 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46935 * 300.00186 * 9 7 5 13 13 C 1.34767 * 120.00480 * 84.75133 * 4 3 2 14 14 O 1.21293 * 120.00266 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99979 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47338 * 180.02562 * 15 13 4 17 17 N 1.46498 * 109.47080 * 180.02562 * 16 15 13 18 18 C 1.40210 * 120.51008 * 89.99661 * 17 16 15 19 19 C 1.38500 * 120.74150 * 15.16692 * 18 17 16 20 20 C 1.38294 * 119.81264 * 179.78937 * 19 18 17 21 21 C 1.38270 * 120.20093 * 0.51522 * 20 19 18 22 22 C 1.38321 * 120.26030 * 359.73315 * 21 20 19 23 23 C 1.38397 * 119.86960 * 359.97438 * 22 21 20 24 24 O 1.35988 * 120.66159 * 180.02562 * 23 22 21 25 25 C 1.42997 * 116.70508 * 147.16033 * 24 23 22 26 26 C 1.35097 * 120.50566 * 269.97734 * 17 16 15 27 27 O 1.21291 * 120.13159 * 1.71116 * 26 17 16 28 28 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47097 * 299.99423 * 1 2 3 30 30 H 1.09003 * 109.47469 * 60.00166 * 1 2 3 31 31 H 1.09000 * 109.47097 * 240.00577 * 2 1 3 32 32 H 1.08996 * 109.47280 * 120.00499 * 2 1 3 33 33 H 1.09005 * 109.47178 * 60.00304 * 3 2 1 34 34 H 1.08996 * 109.47533 * 300.00344 * 3 2 1 35 35 H 0.96998 * 119.99727 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47034 * 59.99577 * 15 13 4 37 37 H 1.09005 * 109.46890 * 300.00240 * 15 13 4 38 38 H 1.08994 * 109.47326 * 59.99774 * 16 15 13 39 39 H 1.08999 * 109.46762 * 299.99073 * 16 15 13 40 40 H 1.07997 * 120.09593 * 0.26917 * 19 18 17 41 41 H 1.08004 * 119.89941 * 180.27643 * 20 19 18 42 42 H 1.07999 * 119.87296 * 179.75459 * 21 20 19 43 43 H 1.07995 * 120.06704 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.44371 * 166.44882 * 25 24 23 45 45 H 1.08991 * 109.44857 * 286.38909 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5510 1.1815 6 1 5.1337 1.0397 1.3076 7 6 3.6730 2.3189 2.2174 8 7 2.8016 3.2681 1.9594 9 14 4.2154 2.0018 3.9765 10 1 5.6836 2.1970 4.0846 11 1 3.5224 2.9487 4.8865 12 1 3.8721 0.6080 4.3567 13 6 4.1784 1.3360 -1.1631 14 8 5.3913 1.3365 -1.1636 15 6 3.4245 1.2173 -2.4625 16 6 4.4182 1.1104 -3.6209 17 7 3.6853 0.9957 -4.8841 18 6 3.3303 2.1429 -5.6079 19 6 3.9166 3.3661 -5.3280 20 6 3.5553 4.4845 -6.0569 21 6 2.6040 4.3865 -7.0555 22 6 2.0111 3.1687 -7.3362 23 6 2.3719 2.0439 -6.6152 24 8 1.7997 0.8386 -6.8781 25 6 2.6207 -0.3171 -6.6907 26 6 3.3413 -0.2172 -5.3697 27 8 3.6108 -1.2217 -4.7456 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 2.4404 3.8043 2.6825 36 1 2.7980 2.0985 -2.6009 37 1 2.7975 0.3260 -2.4387 38 1 5.0443 0.2290 -3.4823 39 1 5.0454 2.0015 -3.6449 40 1 4.6594 3.4448 -4.5481 41 1 4.0148 5.4381 -5.8428 42 1 2.3229 5.2641 -7.6187 43 1 1.2681 3.0958 -8.1166 44 1 1.9964 -1.2106 -6.6964 45 1 3.3500 -0.3789 -7.4983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:33 Heat of formation + Delta-G solvation = -68.003281 kcal Electronic energy + Delta-G solvation = -29177.401835 eV Core-core repulsion = 25160.736647 eV Total energy + Delta-G solvation = -4016.665188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63530 -39.04343 -38.63578 -37.71395 -35.92869 -35.23299 -32.86680 -31.46071 -31.10568 -30.76968 -29.90205 -27.82689 -25.96235 -25.05370 -23.87818 -23.32643 -21.93681 -20.94255 -19.59111 -19.22662 -18.78587 -17.40472 -17.06073 -16.84745 -16.27109 -15.59267 -15.43206 -15.20835 -14.82804 -14.65100 -14.48856 -14.36171 -14.17540 -13.98056 -13.76674 -13.39578 -13.12237 -12.93065 -12.65065 -12.24065 -12.22748 -11.86841 -11.62820 -11.49833 -11.41663 -11.35628 -11.25045 -10.96516 -10.80077 -10.61123 -10.42491 -10.37139 -10.21060 -9.97936 -9.90567 -8.94984 -8.83059 -8.46412 -7.92908 -7.50490 -6.34690 -3.95571 0.93538 1.11057 2.23062 2.45096 3.11863 3.18428 3.24700 3.28885 3.55164 3.84338 3.87687 4.14559 4.50619 4.70047 4.78551 4.80731 4.91286 5.00297 5.05540 5.12035 5.26401 5.34478 5.40955 5.49035 5.59739 5.64683 5.73326 5.81817 5.91352 5.97940 6.05891 6.15711 6.19962 6.30459 6.33595 6.36633 6.42846 6.48508 6.50398 6.63659 6.82174 6.93245 7.23108 7.28440 7.58537 7.68106 8.22142 8.48676 9.16064 9.39903 9.98524 10.68842 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003416 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.533803 B = 8193.817238 C = 8679.427768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.102 3.898 4 N -0.436 5.436 5 C -0.309 4.309 6 H 0.092 0.908 7 C 0.037 3.963 8 N -0.868 5.868 9 Si 0.917 3.083 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.461 3.539 14 O -0.586 6.586 15 C -0.147 4.147 16 C 0.127 3.873 17 N -0.549 5.549 18 C 0.104 3.896 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.110 4.110 23 C 0.071 3.929 24 O -0.304 6.304 25 C 0.053 3.947 26 C 0.483 3.517 27 O -0.503 6.503 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 0.380 -17.862 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.023 4.023 4 N -0.154 5.154 5 C -0.436 4.436 6 H 0.110 0.890 7 C -0.167 4.167 8 N -0.507 5.507 9 Si 0.744 3.256 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.249 3.751 14 O -0.471 6.471 15 C -0.188 4.188 16 C 0.007 3.993 17 N -0.273 5.273 18 C 0.009 3.991 19 C -0.143 4.143 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.129 4.129 23 C 0.025 3.975 24 O -0.218 6.218 25 C -0.025 4.025 26 C 0.271 3.729 27 O -0.377 6.377 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.866 -0.154 -17.391 18.060 hybrid contribution 0.184 -0.098 1.044 1.065 sum -4.682 -0.252 -16.347 17.006 Atomic orbital electron populations 1.21667 0.96299 1.00705 1.01497 1.21972 0.94964 0.99288 1.01714 1.21681 0.81954 0.94532 1.04108 1.43488 1.04669 1.62420 1.04856 1.19433 1.06835 1.28552 0.88826 0.89000 1.25316 0.97251 0.93654 1.00484 1.69912 1.30900 1.16818 1.33020 0.86145 0.79141 0.78320 0.82026 1.19714 1.20955 1.19884 1.19990 0.87886 0.82686 0.84538 1.90518 1.13944 1.55736 1.86918 1.21898 0.99275 1.03392 0.94240 1.21497 0.93606 1.05143 0.79097 1.45923 1.54527 1.04308 1.22543 1.18178 0.98202 0.88357 0.94380 1.20882 1.00991 0.90689 1.01708 1.21035 0.97761 0.98241 0.95557 1.20973 0.97189 0.96888 0.98511 1.20487 1.02059 0.90683 0.99638 1.18621 0.95974 0.86702 0.96218 1.86213 1.38249 1.11863 1.85518 1.23202 0.96005 0.89259 0.94080 1.21538 0.79606 0.83171 0.88629 1.90799 1.52890 1.34674 1.59365 0.93422 0.92691 0.93260 0.93248 0.91678 0.86732 0.93597 0.92159 0.89999 0.89968 0.88296 0.88801 0.84361 0.85025 0.85047 0.84590 0.83896 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.69 6.17 -26.73 -0.16 -2.86 16 3 C 0.10 2.25 4.71 -4.04 -0.02 2.23 16 4 N -0.44 -11.16 2.56 -114.81 -0.29 -11.45 16 5 C -0.31 -8.59 8.98 -14.93 -0.13 -8.73 16 6 H 0.09 2.68 7.70 -52.49 -0.40 2.28 16 7 C 0.04 0.97 4.92 -17.47 -0.09 0.89 16 8 N -0.87 -23.21 11.33 55.50 0.63 -22.58 16 9 Si 0.92 20.60 29.61 -169.99 -5.03 15.57 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.46 11.35 7.59 -10.99 -0.08 11.27 16 14 O -0.59 -16.17 15.81 5.55 0.09 -16.08 16 15 C -0.15 -2.86 4.63 -27.88 -0.13 -2.99 16 16 C 0.13 2.22 4.49 -4.04 -0.02 2.20 16 17 N -0.55 -8.27 2.72 -113.20 -0.31 -8.58 16 18 C 0.10 1.38 6.39 -83.50 -0.53 0.85 16 19 C -0.12 -1.49 9.36 -39.46 -0.37 -1.86 16 20 C -0.11 -1.06 10.04 -39.55 -0.40 -1.45 16 21 C -0.12 -1.02 10.04 -39.54 -0.40 -1.41 16 22 C -0.11 -1.06 10.00 -39.49 -0.39 -1.46 16 23 C 0.07 0.85 6.44 -39.09 -0.25 0.60 16 24 O -0.30 -3.55 10.45 -19.70 -0.21 -3.76 16 25 C 0.05 0.54 7.17 36.06 0.26 0.80 16 26 C 0.48 7.11 7.67 -10.79 -0.08 7.03 16 27 O -0.50 -9.03 16.77 5.55 0.09 -8.93 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.94 6.60 -51.93 -0.34 0.60 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.12 2.78 5.34 -51.93 -0.28 2.51 16 34 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16 37 H 0.08 1.60 6.54 -51.93 -0.34 1.26 16 38 H 0.10 1.90 7.45 -51.93 -0.39 1.51 16 39 H 0.09 1.57 5.92 -51.93 -0.31 1.27 16 40 H 0.14 1.73 6.12 -52.49 -0.32 1.41 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -32.81 370.14 -7.94 -40.74 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.05 Total: 6.25 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.43 Total: 3.24 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.03 Total: -42.61 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.03 Total: -28.77 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.81 -7.94 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.262 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds