Wall clock time and date at job start Tue Mar 31 2020 18:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46957 * 2 1 4 4 N 1.46502 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99692 * 264.75020 * 4 3 2 6 6 H 1.07991 * 120.00073 * 146.16479 * 5 4 3 7 7 C 1.38954 * 120.00082 * 326.16390 * 5 4 3 8 8 N 1.31409 * 119.99786 * 337.68540 * 7 5 4 9 9 Si 1.86797 * 120.00052 * 157.68565 * 7 5 4 10 10 H 1.48500 * 109.47141 * 60.00108 * 9 7 5 11 11 H 1.48493 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46935 * 300.00186 * 9 7 5 13 13 C 1.34767 * 120.00480 * 84.75133 * 4 3 2 14 14 O 1.21293 * 120.00266 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99979 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47338 * 180.02562 * 15 13 4 17 17 N 1.46498 * 109.47080 * 180.02562 * 16 15 13 18 18 C 1.40210 * 120.51008 * 89.99661 * 17 16 15 19 19 C 1.38500 * 120.74150 * 15.16692 * 18 17 16 20 20 C 1.38294 * 119.81264 * 179.78937 * 19 18 17 21 21 C 1.38270 * 120.20093 * 0.51522 * 20 19 18 22 22 C 1.38321 * 120.26030 * 359.73315 * 21 20 19 23 23 C 1.38397 * 119.86960 * 359.97438 * 22 21 20 24 24 O 1.35988 * 120.66159 * 180.02562 * 23 22 21 25 25 C 1.42997 * 116.70508 * 147.16033 * 24 23 22 26 26 C 1.35097 * 120.50566 * 269.97734 * 17 16 15 27 27 O 1.21291 * 120.13159 * 1.71116 * 26 17 16 28 28 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47097 * 299.99423 * 1 2 3 30 30 H 1.09003 * 109.47469 * 60.00166 * 1 2 3 31 31 H 1.09000 * 109.47097 * 240.00577 * 2 1 3 32 32 H 1.08996 * 109.47280 * 120.00499 * 2 1 3 33 33 H 1.09005 * 109.47178 * 60.00304 * 3 2 1 34 34 H 1.08996 * 109.47533 * 300.00344 * 3 2 1 35 35 H 0.96998 * 119.99727 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47034 * 59.99577 * 15 13 4 37 37 H 1.09005 * 109.46890 * 300.00240 * 15 13 4 38 38 H 1.08994 * 109.47326 * 59.99774 * 16 15 13 39 39 H 1.08999 * 109.46762 * 299.99073 * 16 15 13 40 40 H 1.07997 * 120.09593 * 0.26917 * 19 18 17 41 41 H 1.08004 * 119.89941 * 180.27643 * 20 19 18 42 42 H 1.07999 * 119.87296 * 179.75459 * 21 20 19 43 43 H 1.07995 * 120.06704 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.44371 * 166.44882 * 25 24 23 45 45 H 1.08991 * 109.44857 * 286.38909 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5510 1.1815 6 1 5.1337 1.0397 1.3076 7 6 3.6730 2.3189 2.2174 8 7 2.8016 3.2681 1.9594 9 14 4.2154 2.0018 3.9765 10 1 5.6836 2.1970 4.0846 11 1 3.5224 2.9487 4.8865 12 1 3.8721 0.6080 4.3567 13 6 4.1784 1.3360 -1.1631 14 8 5.3913 1.3365 -1.1636 15 6 3.4245 1.2173 -2.4625 16 6 4.4182 1.1104 -3.6209 17 7 3.6853 0.9957 -4.8841 18 6 3.3303 2.1429 -5.6079 19 6 3.9166 3.3661 -5.3280 20 6 3.5553 4.4845 -6.0569 21 6 2.6040 4.3865 -7.0555 22 6 2.0111 3.1687 -7.3362 23 6 2.3719 2.0439 -6.6152 24 8 1.7997 0.8386 -6.8781 25 6 2.6207 -0.3171 -6.6907 26 6 3.3413 -0.2172 -5.3697 27 8 3.6108 -1.2217 -4.7456 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 2.4404 3.8043 2.6825 36 1 2.7980 2.0985 -2.6009 37 1 2.7975 0.3260 -2.4387 38 1 5.0443 0.2290 -3.4823 39 1 5.0454 2.0015 -3.6449 40 1 4.6594 3.4448 -4.5481 41 1 4.0148 5.4381 -5.8428 42 1 2.3229 5.2641 -7.6187 43 1 1.2681 3.0958 -8.1166 44 1 1.9964 -1.2106 -6.6964 45 1 3.3500 -0.3789 -7.4983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:32 Heat of formation + Delta-G solvation = -87.728822 kcal Electronic energy + Delta-G solvation = -29178.257199 eV Core-core repulsion = 25160.736647 eV Total energy + Delta-G solvation = -4017.520552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63581 -40.64327 -39.96399 -38.63186 -37.36356 -36.86488 -34.67025 -33.13132 -32.74165 -31.62158 -30.80456 -28.99014 -27.66397 -26.62027 -25.29191 -24.36546 -23.02300 -22.52725 -20.77330 -20.45231 -20.18638 -18.94100 -18.50890 -18.01933 -17.69377 -17.06283 -16.73484 -16.37558 -16.25096 -16.09717 -15.91463 -15.54983 -15.46286 -15.22785 -15.10111 -14.68828 -14.47673 -14.14393 -13.98691 -13.80191 -13.45304 -13.34568 -13.21078 -13.02936 -12.95392 -12.64225 -12.45542 -12.27955 -12.20190 -12.15770 -12.10225 -12.04930 -11.58482 -11.54726 -11.08221 -10.93147 -10.46923 -9.66368 -9.52616 -8.91323 -8.38611 -6.08528 0.05156 0.29507 1.19015 1.34016 1.36126 1.40237 1.50199 1.93517 2.25525 2.27654 2.72365 2.89492 2.94586 3.03991 3.60741 3.73780 3.81197 3.90275 4.01335 4.03363 4.04943 4.15864 4.22915 4.25518 4.37530 4.41413 4.47182 4.57316 4.61747 4.66870 4.73012 4.77894 4.91373 5.00432 5.06712 5.20929 5.26531 5.31067 5.32231 5.43195 5.52389 5.54585 5.68757 5.85907 6.14817 6.28531 6.46020 6.56595 7.10911 7.39429 7.98021 8.63619 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.003416 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.533803 B = 8193.817238 C = 8679.427768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.448 5.448 5 C -0.348 4.348 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.883 5.883 9 Si 0.980 3.020 10 H -0.276 1.276 11 H -0.268 1.268 12 H -0.267 1.267 13 C 0.447 3.553 14 O -0.627 6.627 15 C -0.124 4.124 16 C 0.139 3.861 17 N -0.551 5.551 18 C 0.074 3.926 19 C -0.139 4.139 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.106 4.106 23 C 0.062 3.938 24 O -0.307 6.307 25 C 0.062 3.938 26 C 0.474 3.526 27 O -0.548 6.548 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.276 0.724 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.168 0.832 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 1.472 -19.575 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C -0.019 4.019 4 N -0.165 5.165 5 C -0.475 4.475 6 H 0.082 0.918 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.803 3.197 10 H -0.201 1.201 11 H -0.192 1.192 12 H -0.192 1.192 13 C 0.236 3.764 14 O -0.514 6.514 15 C -0.165 4.165 16 C 0.017 3.983 17 N -0.275 5.275 18 C -0.019 4.019 19 C -0.159 4.159 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.124 4.124 23 C 0.016 3.984 24 O -0.221 6.221 25 C -0.016 4.016 26 C 0.264 3.736 27 O -0.425 6.425 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.170 0.830 42 H 0.186 0.814 43 H 0.181 0.819 44 H 0.185 0.815 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.221 0.972 -19.138 20.478 hybrid contribution 0.906 -0.309 1.516 1.793 sum -6.315 0.663 -17.622 18.731 Atomic orbital electron populations 1.21615 0.93028 1.02438 1.02252 1.21875 0.97699 0.96817 1.00762 1.21746 0.80045 0.96483 1.03636 1.43764 1.06057 1.62075 1.04631 1.19382 1.07109 1.30207 0.90841 0.91794 1.26040 0.96976 0.92763 1.03685 1.69967 1.30974 1.16712 1.34420 0.85209 0.78469 0.78719 0.77270 1.20146 1.19214 1.19174 1.20792 0.87813 0.81791 0.85963 1.90472 1.15829 1.57409 1.87735 1.21677 0.99018 1.03657 0.92160 1.21109 0.93127 1.03971 0.80120 1.45858 1.54382 1.05562 1.21707 1.18406 0.99999 0.87876 0.95658 1.20959 1.01286 0.91491 1.02211 1.21346 0.97923 0.98166 0.95313 1.21423 0.95413 0.97790 0.97373 1.20897 1.02015 0.90004 0.99518 1.18896 0.95780 0.87553 0.96205 1.86204 1.38575 1.12007 1.85327 1.23384 0.96655 0.89689 0.91845 1.22474 0.79037 0.82275 0.89824 1.90772 1.54892 1.35903 1.60910 0.91222 0.92531 0.91895 0.93425 0.93417 0.88568 0.92378 0.91430 0.88945 0.89884 0.90781 0.88741 0.85856 0.82997 0.81395 0.81897 0.81496 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.91 71.98 0.71 -3.28 16 2 C -0.13 -5.11 6.17 30.59 0.19 -4.92 16 3 C 0.10 4.70 4.71 86.38 0.41 5.11 16 4 N -0.45 -23.87 2.56 -635.55 -1.63 -25.49 16 5 C -0.35 -20.20 8.98 84.04 0.75 -19.44 16 6 H 0.06 3.98 7.70 -2.91 -0.02 3.96 16 7 C 0.01 0.45 4.92 84.93 0.42 0.87 16 8 N -0.88 -47.45 11.33 21.66 0.25 -47.20 16 9 Si 0.98 42.60 29.61 68.60 2.03 44.63 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.45 23.19 7.59 87.66 0.67 23.86 16 14 O -0.63 -36.82 15.81 -3.07 -0.05 -36.87 16 15 C -0.12 -5.03 4.63 29.85 0.14 -4.89 16 16 C 0.14 5.14 4.49 86.38 0.39 5.53 16 17 N -0.55 -17.01 2.72 -630.25 -1.71 -18.72 16 18 C 0.07 1.94 6.39 38.14 0.24 2.18 16 19 C -0.14 -3.36 9.36 22.35 0.21 -3.15 16 20 C -0.11 -1.90 10.04 22.29 0.22 -1.68 16 21 C -0.10 -1.37 10.04 22.30 0.22 -1.15 16 22 C -0.11 -1.66 10.00 22.33 0.22 -1.43 16 23 C 0.06 1.35 6.44 22.59 0.15 1.50 16 24 O -0.31 -6.43 10.45 -93.41 -0.98 -7.40 16 25 C 0.06 1.16 7.17 71.27 0.51 1.67 16 26 C 0.47 14.06 7.67 87.64 0.67 14.74 16 27 O -0.55 -20.33 16.77 -3.06 -0.05 -20.38 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.83 6.60 -2.39 -0.02 1.81 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 4.73 5.34 -2.38 -0.01 4.72 16 34 H 0.06 2.42 6.66 -2.39 -0.02 2.40 16 35 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.09 3.52 7.41 -2.39 -0.02 3.50 16 37 H 0.08 3.34 6.54 -2.38 -0.02 3.33 16 38 H 0.07 3.09 7.45 -2.39 -0.02 3.07 16 39 H 0.09 3.42 5.92 -2.39 -0.01 3.41 16 40 H 0.12 3.26 6.12 -2.91 -0.02 3.24 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 43 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.17 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.08 370.14 5.00 -70.08 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 1.01 Total: 25.85 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 6.13 Total: 15.51 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.09 Total: -91.42 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -1.08 Total: -64.65 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.08 5.00 -70.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.650 kcal (2) G-P(sol) polarization free energy of solvation -75.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds