Wall clock time and date at job start Tue Mar 31 2020 18:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46935 * 2 1 4 4 N 1.46499 * 109.46862 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00012 * 264.76929 * 4 3 2 6 6 H 1.07997 * 120.00063 * 138.86109 * 5 4 3 7 7 C 1.38950 * 120.00087 * 318.85872 * 5 4 3 8 8 N 1.31411 * 119.99979 * 341.82519 * 7 5 4 9 9 Si 1.86801 * 120.00079 * 161.82779 * 7 5 4 10 10 H 1.48500 * 109.47502 * 90.00053 * 9 7 5 11 11 H 1.48503 * 109.47090 * 210.00037 * 9 7 5 12 12 H 1.48501 * 109.47128 * 329.99648 * 9 7 5 13 13 C 1.34775 * 120.00150 * 84.77094 * 4 3 2 14 14 O 1.21284 * 120.00283 * 179.97438 * 13 4 3 15 15 C 1.50709 * 119.99570 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.46638 * 179.97438 * 15 13 4 17 17 C 1.53001 * 109.46982 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47477 * 180.02562 * 17 16 15 19 19 C 1.39465 * 126.25535 * 270.17481 * 18 17 16 20 20 C 1.38610 * 133.36356 * 359.95913 * 19 18 17 21 21 C 1.38131 * 119.82734 * 180.38295 * 20 19 18 22 22 C 1.38414 * 120.18183 * 359.95183 * 21 20 19 23 23 C 1.38117 * 120.31050 * 0.04681 * 22 21 20 24 24 C 1.38606 * 119.92194 * 359.97438 * 23 22 21 25 25 O 1.35564 * 132.99979 * 179.97438 * 24 23 22 26 26 C 1.34223 * 109.18093 * 180.02562 * 25 24 23 27 27 O 1.21595 * 125.27620 * 179.97438 * 26 25 24 28 28 H 1.09003 * 109.47445 * 299.99766 * 1 2 3 29 29 H 1.09004 * 109.47378 * 60.00136 * 1 2 3 30 30 H 1.08997 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47118 * 240.00091 * 2 1 3 32 32 H 1.08996 * 109.46761 * 119.99823 * 2 1 3 33 33 H 1.09003 * 109.46863 * 59.99877 * 3 2 1 34 34 H 1.08995 * 109.47139 * 300.00060 * 3 2 1 35 35 H 0.97001 * 120.00156 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47128 * 60.00112 * 15 13 4 37 37 H 1.08996 * 109.47090 * 300.00236 * 15 13 4 38 38 H 1.09002 * 109.47195 * 60.00245 * 16 15 13 39 39 H 1.09005 * 109.47427 * 299.99849 * 16 15 13 40 40 H 1.09002 * 109.46956 * 60.00098 * 17 16 15 41 41 H 1.08996 * 109.46917 * 300.00433 * 17 16 15 42 42 H 1.08006 * 120.08526 * 0.37690 * 20 19 18 43 43 H 1.07993 * 119.90915 * 179.97438 * 21 20 19 44 44 H 1.08002 * 119.83961 * 180.02562 * 22 21 20 45 45 H 1.08006 * 120.03771 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.5509 1.1832 6 1 5.0699 0.9487 1.3548 7 6 3.7521 2.4356 2.1611 8 7 2.9269 3.4083 1.8453 9 14 4.3367 2.2424 3.9248 10 1 5.5811 3.0282 4.1228 11 1 3.2866 2.7366 4.8513 12 1 4.6069 0.8089 4.2024 13 6 4.1794 1.3360 -1.1614 14 8 5.3922 1.3364 -1.1610 15 6 3.4263 1.2163 -2.4613 16 6 4.4211 1.1109 -3.6190 17 6 3.6566 0.9900 -4.9389 18 7 4.6090 0.8884 -6.0474 19 6 5.1478 1.9514 -6.7718 20 6 4.9881 3.3266 -6.7050 21 6 5.6700 4.1412 -7.5878 22 6 6.5120 3.5878 -8.5369 23 6 6.6761 2.2184 -8.6093 24 6 5.9957 1.3929 -7.7280 25 8 5.9575 0.0478 -7.5633 26 6 5.1270 -0.2492 -6.5515 27 8 4.8762 -1.3710 -6.1551 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 2.6209 4.0257 2.5280 36 1 2.7994 2.0970 -2.6005 37 1 2.7999 0.3245 -2.4376 38 1 5.0483 0.2303 -3.4801 39 1 5.0471 2.0029 -3.6426 40 1 3.0297 1.8708 -5.0776 41 1 3.0303 0.0982 -4.9156 42 1 4.3320 3.7601 -5.9646 43 1 5.5462 5.2128 -7.5372 44 1 7.0428 4.2300 -9.2241 45 1 7.3345 1.7913 -9.3514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:28 Heat of formation + Delta-G solvation = -57.784040 kcal Electronic energy + Delta-G solvation = -28214.890333 eV Core-core repulsion = 24198.668284 eV Total energy + Delta-G solvation = -4016.222049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.40036 -38.81357 -38.71596 -37.65047 -36.42365 -35.29933 -33.33666 -32.61053 -31.17597 -30.97394 -29.70358 -27.69120 -25.81176 -24.60006 -23.66557 -22.97300 -22.74934 -21.13976 -20.90443 -18.85784 -18.77124 -17.86997 -17.45754 -16.83887 -16.66513 -15.96316 -15.41170 -15.33353 -14.93326 -14.72362 -14.45715 -14.28373 -14.20344 -13.79907 -13.60554 -13.46069 -13.43766 -12.86251 -12.65102 -12.51075 -12.08694 -11.89036 -11.68181 -11.59728 -11.43853 -11.34162 -11.20679 -11.01778 -10.93705 -10.75628 -10.65113 -10.56022 -10.33948 -10.25201 -9.92989 -9.10873 -8.92568 -8.42838 -8.32994 -7.41720 -6.33005 -4.00994 0.78813 0.87160 1.93304 2.37783 2.68019 3.17040 3.25219 3.27310 3.30543 3.91596 4.06570 4.15120 4.40678 4.55885 4.70434 4.82537 4.88594 4.97565 5.02954 5.08059 5.18084 5.23572 5.41477 5.51965 5.56773 5.61748 5.65707 5.73493 5.76111 5.92985 5.94110 6.04858 6.06847 6.12987 6.25373 6.28080 6.32680 6.38665 6.45793 6.53085 6.59368 6.89850 7.02787 7.21889 7.54234 7.57912 8.29974 8.51692 9.19916 9.39929 10.02172 10.72157 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002701 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.691971 B =10364.609899 C =11064.225429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.110 3.890 4 N -0.442 5.442 5 C -0.309 4.309 6 H 0.086 0.914 7 C 0.039 3.961 8 N -0.873 5.873 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.462 3.538 14 O -0.581 6.581 15 C -0.132 4.132 16 C -0.118 4.118 17 C 0.129 3.871 18 N -0.541 5.541 19 C 0.077 3.923 20 C -0.099 4.099 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.080 4.080 24 C 0.030 3.970 25 O -0.240 6.240 26 C 0.634 3.366 27 O -0.484 6.484 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 2.307 -18.573 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.015 4.015 4 N -0.161 5.161 5 C -0.437 4.437 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.510 5.510 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.250 3.750 14 O -0.464 6.464 15 C -0.173 4.173 16 C -0.157 4.157 17 C 0.010 3.990 18 N -0.272 5.272 19 C -0.021 4.021 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.132 4.132 23 C -0.099 4.099 24 C -0.017 4.017 25 O -0.145 6.145 26 C 0.389 3.611 27 O -0.367 6.367 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.888 1.585 -18.280 18.445 hybrid contribution 0.019 -0.033 1.071 1.072 sum -1.868 1.552 -17.209 17.379 Atomic orbital electron populations 1.21681 0.96342 1.00715 1.01529 1.22004 0.94881 0.99386 1.01795 1.21526 0.82318 0.94188 1.03436 1.43434 1.04387 1.63475 1.04848 1.19356 1.11922 1.21377 0.91011 0.89582 1.25399 0.97032 0.93562 1.00501 1.69919 1.33634 1.13506 1.33969 0.86109 0.78447 0.78913 0.82283 1.20282 1.20829 1.19400 1.20279 0.88063 0.81783 0.84860 1.90526 1.14212 1.54757 1.86903 1.21547 0.98648 1.03018 0.94065 1.21680 0.98464 1.04418 0.91127 1.21871 0.89422 1.04488 0.83250 1.46009 1.43231 1.04863 1.33130 1.18624 0.97973 0.91151 0.94356 1.20208 1.02073 0.88588 1.01124 1.21037 0.95981 1.00201 0.94452 1.20937 0.99490 0.93198 0.99569 1.20018 0.99777 0.91911 0.98207 1.19044 1.02027 0.80483 1.00128 1.84986 1.58700 1.22436 1.48424 1.18539 0.78520 0.85321 0.78716 1.91166 1.63062 1.20116 1.62352 0.92752 0.93179 0.93436 0.93098 0.91701 0.87852 0.93417 0.92328 0.89923 0.90061 0.90633 0.90686 0.88760 0.88404 0.84462 0.84319 0.84200 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.48 6.17 -26.73 -0.16 -2.64 16 3 C 0.11 2.28 4.69 -4.04 -0.02 2.26 16 4 N -0.44 -11.00 2.50 -114.81 -0.29 -11.29 16 5 C -0.31 -8.53 8.84 -14.93 -0.13 -8.66 16 6 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 7 C 0.04 1.03 4.95 -17.47 -0.09 0.95 16 8 N -0.87 -23.25 11.61 55.50 0.64 -22.61 16 9 Si 0.92 20.60 29.59 -169.99 -5.03 15.57 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.46 11.08 7.59 -10.98 -0.08 11.00 16 14 O -0.58 -16.22 15.89 5.55 0.09 -16.14 16 15 C -0.13 -2.27 4.31 -27.88 -0.12 -2.39 16 16 C -0.12 -1.89 4.83 -26.73 -0.13 -2.02 16 17 C 0.13 1.58 6.04 -4.04 -0.02 1.56 16 18 N -0.54 -7.33 2.81 -119.02 -0.33 -7.66 16 19 C 0.08 0.92 6.84 -83.79 -0.57 0.34 16 20 C -0.10 -0.92 10.03 -39.48 -0.40 -1.32 16 21 C -0.10 -0.70 10.04 -39.56 -0.40 -1.10 16 22 C -0.11 -0.75 10.03 -39.56 -0.40 -1.15 16 23 C -0.08 -0.68 10.06 -39.49 -0.40 -1.07 16 24 C 0.03 0.35 7.35 -38.99 -0.29 0.07 16 25 O -0.24 -3.44 10.72 -21.98 -0.24 -3.67 16 26 C 0.63 10.01 9.07 54.06 0.49 10.50 16 27 O -0.48 -8.99 17.81 -19.00 -0.34 -9.33 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.84 6.59 -51.93 -0.34 0.50 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 2.40 5.76 -51.93 -0.30 2.11 16 34 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.08 1.26 7.41 -51.93 -0.38 0.88 16 37 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 38 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 39 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 42 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -34.15 379.30 -8.45 -42.60 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.32 Total: 2.13 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -2.35 Total: 4.68 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.02 Total: -41.56 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.49 Total: -29.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.15 -8.45 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.186 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds