Wall clock time and date at job start Tue Mar 31 2020 17:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 C 1.53009 * 109.47196 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.35803 * 116.99872 * 180.02562 * 5 4 3 7 7 C 1.38845 * 119.92446 * 359.71973 * 6 5 4 8 8 C 1.37769 * 120.15732 * 179.76541 * 7 6 5 9 9 C 1.39772 * 119.99408 * 0.49440 * 8 7 6 10 10 C 1.47505 * 120.07479 * 179.78892 * 9 8 7 11 11 O 1.21618 * 120.00316 * 132.45109 * 10 9 8 12 12 N 1.34780 * 119.99892 * 312.44362 * 10 9 8 13 13 C 1.36893 * 119.99888 * 185.37089 * 12 10 9 14 14 H 1.08001 * 120.00514 * 321.58647 * 13 12 10 15 15 C 1.39025 * 119.99981 * 141.58784 * 13 12 10 16 16 N 1.31376 * 120.00032 * 160.38678 * 15 13 12 17 17 Si 1.86798 * 119.99805 * 340.38858 * 15 13 12 18 18 H 1.48500 * 109.47316 * 95.33313 * 17 15 13 19 19 H 1.48505 * 109.46814 * 215.32946 * 17 15 13 20 20 H 1.48494 * 109.47335 * 335.32839 * 17 15 13 21 21 C 1.46503 * 119.99648 * 5.37303 * 12 10 9 22 22 C 1.47201 * 109.47218 * 94.85094 * 21 12 10 23 23 N 8.52876 * 174.71524 * 132.92135 * 2 1 3 24 24 C 1.39788 * 119.85081 * 359.76002 * 9 8 7 25 25 C 1.38127 * 119.84135 * 0.02562 * 24 9 8 26 26 O 1.36005 * 119.99809 * 179.97438 * 25 24 9 27 27 C 1.42900 * 116.99694 * 359.97395 * 26 25 24 28 28 H 1.08992 * 109.47053 * 299.99704 * 1 2 3 29 29 H 1.08995 * 109.47074 * 60.00460 * 1 2 3 30 30 H 1.09006 * 109.46877 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47488 * 240.00154 * 2 1 3 32 32 H 1.09000 * 109.47522 * 119.99706 * 2 1 3 33 33 H 1.08996 * 109.47480 * 60.00269 * 3 2 1 34 34 H 1.08998 * 109.47353 * 299.99698 * 3 2 1 35 35 H 1.08998 * 109.46727 * 300.00085 * 4 3 2 36 36 H 1.08996 * 109.46683 * 59.99785 * 4 3 2 37 37 H 1.08005 * 119.92099 * 0.02562 * 7 6 5 38 38 H 1.07996 * 120.00409 * 180.25542 * 8 7 6 39 39 H 0.97006 * 119.99959 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46669 * 214.84764 * 21 12 10 41 41 H 1.08997 * 109.47320 * 334.84979 * 21 12 10 42 42 H 1.07996 * 120.08122 * 180.02562 * 24 9 8 43 43 H 1.09005 * 109.46712 * 180.02562 * 27 26 25 44 44 H 1.08997 * 109.47316 * 299.99743 * 27 26 25 45 45 H 1.08998 * 109.47571 * 60.00631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3926 2.9678 0.0000 7 6 6.2369 1.8656 0.0063 8 6 7.6035 2.0406 0.0014 9 6 8.1428 3.3301 0.0004 10 6 9.6057 3.5194 -0.0002 11 8 10.1173 4.3020 -0.7779 12 7 10.3754 2.8253 0.8614 13 6 11.7182 3.0800 0.9376 14 1 12.2789 3.2956 0.0401 15 6 12.3604 3.0612 2.1705 16 7 13.6651 2.9187 2.2295 17 14 11.3682 3.2385 3.7432 18 1 11.0607 1.8921 4.2890 19 1 12.1542 4.0090 4.7401 20 1 10.1010 3.9554 3.4509 21 6 9.7748 1.7982 1.7162 22 6 9.9146 0.4815 1.0733 23 7 10.0225 -0.5350 0.5752 24 6 7.2928 4.4398 -0.0007 25 6 5.9237 4.2569 -0.0002 26 8 5.0937 5.3343 -0.0007 27 6 5.7065 6.6252 -0.0011 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 0.8909 36 1 3.9337 0.9286 -0.8891 37 1 5.8215 0.8687 0.0109 38 1 8.2579 1.1815 0.0022 39 1 14.1132 2.9059 3.0897 40 1 10.2815 1.7870 2.6812 41 1 8.7179 2.0204 1.8634 42 1 7.7055 5.4378 -0.0019 43 1 4.9339 7.3941 -0.0011 44 1 6.3264 6.7335 0.8888 45 1 6.3265 6.7329 -0.8911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060859783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:44 Heat of formation + Delta-G solvation = -37.084568 kcal Electronic energy + Delta-G solvation = -28357.886068 eV Core-core repulsion = 24342.561615 eV Total energy + Delta-G solvation = -4015.324452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -40.71371 -39.27717 -38.61863 -36.55619 -36.39283 -35.32676 -34.76550 -32.33381 -30.65862 -30.37057 -29.17722 -27.92093 -27.34197 -25.38261 -24.30371 -22.75398 -22.04422 -21.20487 -19.83622 -18.72828 -18.35398 -17.44776 -16.78433 -16.63208 -16.43795 -15.89500 -15.77755 -15.64973 -14.94900 -14.85496 -14.55749 -14.38819 -14.00841 -13.68995 -13.57229 -13.22925 -13.09473 -12.99923 -12.66501 -12.53560 -12.47557 -12.25739 -12.09149 -11.90878 -11.69823 -11.61521 -11.50503 -11.28561 -11.22855 -11.12150 -10.99772 -10.92857 -10.75334 -10.46911 -10.07429 -9.35845 -8.91536 -8.70149 -8.15595 -7.77221 -6.57905 -4.20598 1.16321 1.36402 2.83789 2.94549 3.01058 3.02389 3.08085 3.16842 3.24356 3.37112 3.81813 3.94754 4.21276 4.42211 4.52969 4.53209 4.68877 4.78154 4.88310 4.90669 4.91267 5.04116 5.12733 5.18799 5.20960 5.21518 5.34051 5.35583 5.39708 5.42682 5.43883 5.52263 5.54428 5.61799 5.68933 5.74506 5.85234 5.93893 6.08182 6.21804 6.49933 6.59529 7.02017 7.28991 7.54701 7.87827 8.02660 8.23176 8.69177 9.03980 9.42418 10.52976 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003337 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.219633 B = 8387.691092 C = 9498.189902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.055 3.945 5 O -0.303 6.303 6 C 0.109 3.891 7 C -0.175 4.175 8 C -0.104 4.104 9 C -0.104 4.104 10 C 0.516 3.484 11 O -0.539 6.539 12 N -0.452 5.452 13 C -0.324 4.324 14 H 0.114 0.886 15 C 0.064 3.936 16 N -0.850 5.850 17 Si 0.860 3.140 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.254 1.254 21 C 0.173 3.827 22 C 0.208 3.792 23 N -0.434 5.434 24 C -0.126 4.126 25 C 0.095 3.905 26 O -0.307 6.307 27 C 0.024 3.976 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.278 0.722 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.145 0.855 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.988 -0.873 0.943 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.020 4.020 5 O -0.217 6.217 6 C 0.063 3.937 7 C -0.193 4.193 8 C -0.123 4.123 9 C -0.108 4.108 10 C 0.305 3.695 11 O -0.419 6.419 12 N -0.174 5.174 13 C -0.451 4.451 14 H 0.131 0.869 15 C -0.144 4.144 16 N -0.484 5.484 17 Si 0.687 3.313 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.178 1.178 21 C 0.046 3.954 22 C -0.111 4.111 23 N -0.113 5.113 24 C -0.146 4.146 25 C 0.050 3.950 26 O -0.221 6.221 27 C -0.072 4.072 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.162 0.838 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.694 -1.811 -0.087 22.767 hybrid contribution 0.139 0.263 1.174 1.211 sum -22.556 -1.548 1.087 22.635 Atomic orbital electron populations 1.21746 0.95255 1.01805 1.02081 1.21442 0.96367 0.95707 1.02490 1.21560 0.92581 0.97616 1.03811 1.22869 0.95382 0.82239 1.01505 1.86087 1.18201 1.28610 1.88822 1.18278 0.82866 0.91008 1.01549 1.20935 0.93519 0.97461 1.07423 1.21265 0.94597 0.96602 0.99840 1.19990 0.94793 0.93051 1.02976 1.18065 0.84826 0.82127 0.84447 1.90699 1.74135 1.37756 1.39303 1.43492 1.08708 1.28988 1.36246 1.19086 0.80089 1.49799 0.96135 0.86900 1.25394 0.95468 0.95285 0.98220 1.69697 1.08539 1.43217 1.26956 0.87169 0.81759 0.78831 0.83560 1.19465 1.20399 1.17755 1.19690 1.01572 0.79445 0.94666 1.29840 0.92542 0.94784 0.93940 1.81125 1.08959 1.12534 1.08668 1.21050 0.90273 1.00036 1.03209 1.18032 0.88593 0.85406 1.02959 1.86138 1.33661 1.13040 1.89283 1.23099 0.99840 0.82374 1.01848 0.92547 0.92564 0.92531 0.91647 0.91623 0.90780 0.90801 0.91954 0.92023 0.84553 0.85320 0.91093 0.87761 0.86441 0.83774 0.88326 0.92458 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.91 5.58 -26.73 -0.15 -1.06 16 4 C 0.06 0.52 4.74 37.16 0.18 0.70 16 5 O -0.30 -4.00 9.91 -33.78 -0.33 -4.34 16 6 C 0.11 1.57 6.71 -38.92 -0.26 1.30 16 7 C -0.17 -2.37 9.01 -39.53 -0.36 -2.72 16 8 C -0.10 -1.65 7.49 -39.18 -0.29 -1.94 16 9 C -0.10 -1.89 4.99 -104.97 -0.52 -2.42 16 10 C 0.52 11.62 7.19 -12.48 -0.09 11.53 16 11 O -0.54 -14.03 16.87 5.26 0.09 -13.94 16 12 N -0.45 -10.34 2.14 -119.13 -0.25 -10.60 16 13 C -0.32 -8.63 9.35 -15.00 -0.14 -8.77 16 14 H 0.11 3.41 7.88 -52.49 -0.41 3.00 16 15 C 0.06 1.66 5.36 -17.45 -0.09 1.57 16 16 N -0.85 -23.25 13.95 55.50 0.77 -22.47 16 17 Si 0.86 18.22 24.89 -169.99 -4.23 13.99 16 18 H -0.27 -5.19 6.73 56.52 0.38 -4.81 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.25 -5.10 7.11 56.52 0.40 -4.70 16 21 C 0.17 3.26 4.37 -6.83 -0.03 3.23 16 22 C 0.21 4.01 13.08 -20.73 -0.27 3.74 16 23 N -0.43 -8.80 18.54 42.19 0.78 -8.02 16 24 C -0.13 -2.06 8.69 -39.04 -0.34 -2.40 16 25 C 0.10 1.45 6.69 -39.18 -0.26 1.19 16 26 O -0.31 -4.34 10.28 -34.41 -0.35 -4.70 16 27 C 0.02 0.25 9.81 101.05 0.99 1.24 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.53 7.64 -51.93 -0.40 0.13 16 36 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.14 1.47 6.27 -52.48 -0.33 1.14 16 38 H 0.13 2.10 4.58 -52.49 -0.24 1.86 16 39 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.11 1.99 2.96 -51.93 -0.15 1.84 16 41 H 0.12 1.82 5.41 -51.93 -0.28 1.54 16 42 H 0.14 2.24 6.28 -52.49 -0.33 1.91 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 45 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -31.69 373.87 -5.20 -36.89 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.88 Total: 3.76 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.43 Total: 3.79 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 1.30 Total: -41.09 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.60 Total: -22.97 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.23 Total: 13.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.69 -5.20 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.195 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds