Wall clock time and date at job start Tue Mar 31 2020 17:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 C 1.53009 * 109.47196 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.35803 * 116.99872 * 180.02562 * 5 4 3 7 7 C 1.38845 * 119.92446 * 359.71973 * 6 5 4 8 8 C 1.37769 * 120.15732 * 179.76541 * 7 6 5 9 9 C 1.39772 * 119.99408 * 0.49440 * 8 7 6 10 10 C 1.47505 * 120.07479 * 179.78892 * 9 8 7 11 11 O 1.21618 * 120.00316 * 132.45109 * 10 9 8 12 12 N 1.34780 * 119.99892 * 312.44362 * 10 9 8 13 13 C 1.36893 * 119.99888 * 185.37089 * 12 10 9 14 14 H 1.08001 * 120.00514 * 321.58647 * 13 12 10 15 15 C 1.39025 * 119.99981 * 141.58784 * 13 12 10 16 16 N 1.31376 * 120.00032 * 160.38678 * 15 13 12 17 17 Si 1.86798 * 119.99805 * 340.38858 * 15 13 12 18 18 H 1.48500 * 109.47316 * 95.33313 * 17 15 13 19 19 H 1.48505 * 109.46814 * 215.32946 * 17 15 13 20 20 H 1.48494 * 109.47335 * 335.32839 * 17 15 13 21 21 C 1.46503 * 119.99648 * 5.37303 * 12 10 9 22 22 C 1.47201 * 109.47218 * 94.85094 * 21 12 10 23 23 N 8.52876 * 174.71524 * 132.92135 * 2 1 3 24 24 C 1.39788 * 119.85081 * 359.76002 * 9 8 7 25 25 C 1.38127 * 119.84135 * 0.02562 * 24 9 8 26 26 O 1.36005 * 119.99809 * 179.97438 * 25 24 9 27 27 C 1.42900 * 116.99694 * 359.97395 * 26 25 24 28 28 H 1.08992 * 109.47053 * 299.99704 * 1 2 3 29 29 H 1.08995 * 109.47074 * 60.00460 * 1 2 3 30 30 H 1.09006 * 109.46877 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47488 * 240.00154 * 2 1 3 32 32 H 1.09000 * 109.47522 * 119.99706 * 2 1 3 33 33 H 1.08996 * 109.47480 * 60.00269 * 3 2 1 34 34 H 1.08998 * 109.47353 * 299.99698 * 3 2 1 35 35 H 1.08998 * 109.46727 * 300.00085 * 4 3 2 36 36 H 1.08996 * 109.46683 * 59.99785 * 4 3 2 37 37 H 1.08005 * 119.92099 * 0.02562 * 7 6 5 38 38 H 1.07996 * 120.00409 * 180.25542 * 8 7 6 39 39 H 0.97006 * 119.99959 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46669 * 214.84764 * 21 12 10 41 41 H 1.08997 * 109.47320 * 334.84979 * 21 12 10 42 42 H 1.07996 * 120.08122 * 180.02562 * 24 9 8 43 43 H 1.09005 * 109.46712 * 180.02562 * 27 26 25 44 44 H 1.08997 * 109.47316 * 299.99743 * 27 26 25 45 45 H 1.08998 * 109.47571 * 60.00631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3926 2.9678 0.0000 7 6 6.2369 1.8656 0.0063 8 6 7.6035 2.0406 0.0014 9 6 8.1428 3.3301 0.0004 10 6 9.6057 3.5194 -0.0002 11 8 10.1173 4.3020 -0.7779 12 7 10.3754 2.8253 0.8614 13 6 11.7182 3.0800 0.9376 14 1 12.2789 3.2956 0.0401 15 6 12.3604 3.0612 2.1705 16 7 13.6651 2.9187 2.2295 17 14 11.3682 3.2385 3.7432 18 1 11.0607 1.8921 4.2890 19 1 12.1542 4.0090 4.7401 20 1 10.1010 3.9554 3.4509 21 6 9.7748 1.7982 1.7162 22 6 9.9146 0.4815 1.0733 23 7 10.0225 -0.5350 0.5752 24 6 7.2928 4.4398 -0.0007 25 6 5.9237 4.2569 -0.0002 26 8 5.0937 5.3343 -0.0007 27 6 5.7065 6.6252 -0.0011 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 0.8909 36 1 3.9337 0.9286 -0.8891 37 1 5.8215 0.8687 0.0109 38 1 8.2579 1.1815 0.0022 39 1 14.1132 2.9059 3.0897 40 1 10.2815 1.7870 2.6812 41 1 8.7179 2.0204 1.8634 42 1 7.7055 5.4378 -0.0019 43 1 4.9339 7.3941 -0.0011 44 1 6.3264 6.7335 0.8888 45 1 6.3265 6.7329 -0.8911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:43 Heat of formation + Delta-G solvation = -56.614687 kcal Electronic energy + Delta-G solvation = -28358.732957 eV Core-core repulsion = 24342.561615 eV Total energy + Delta-G solvation = -4016.171342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94503 -40.78936 -39.61649 -38.07265 -37.73753 -36.54031 -35.94598 -34.25555 -31.72154 -31.54393 -30.03151 -29.49912 -28.40099 -27.02917 -25.14100 -24.06699 -22.95091 -21.90337 -21.32653 -20.46470 -19.49606 -18.83341 -18.31745 -17.77003 -17.46287 -17.34817 -17.26096 -16.58560 -16.26336 -15.88166 -15.63797 -15.51530 -15.40391 -15.09172 -14.75429 -14.54284 -14.37368 -14.18956 -13.97433 -13.84659 -13.81576 -13.40327 -13.30566 -13.15790 -12.94947 -12.76234 -12.49006 -12.35456 -12.33692 -12.00242 -11.96926 -11.84399 -11.83173 -11.73197 -11.40376 -11.18018 -10.69031 -10.09361 -9.88255 -8.92782 -8.54795 -6.26333 -0.10213 0.18885 1.19188 1.32533 1.36680 1.45405 1.60170 1.74812 2.09436 2.16086 2.27215 2.47373 2.66041 2.74521 3.06817 3.56515 3.67865 3.84615 3.91740 3.97351 3.98515 4.06844 4.10512 4.15275 4.23872 4.39121 4.41027 4.42193 4.45950 4.55968 4.66526 4.75145 4.85421 4.90448 4.94225 5.02956 5.05752 5.24828 5.27539 5.36204 5.39190 5.45357 5.48176 5.96714 6.04158 6.31132 6.38576 6.50817 6.75661 7.06944 7.58288 8.61163 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.003337 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.219633 B = 8387.691092 C = 9498.189902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.114 4.114 4 C 0.044 3.956 5 O -0.313 6.313 6 C 0.119 3.881 7 C -0.161 4.161 8 C -0.099 4.099 9 C -0.126 4.126 10 C 0.517 3.483 11 O -0.590 6.590 12 N -0.461 5.461 13 C -0.344 4.344 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.901 5.901 17 Si 0.924 3.076 18 H -0.228 1.228 19 H -0.279 1.279 20 H -0.234 1.234 21 C 0.175 3.825 22 C 0.218 3.782 23 N -0.450 5.450 24 C -0.127 4.127 25 C 0.093 3.907 26 O -0.317 6.317 27 C 0.015 3.985 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.171 0.829 38 H 0.125 0.875 39 H 0.285 0.715 40 H 0.110 0.890 41 H 0.159 0.841 42 H 0.143 0.857 43 H 0.128 0.872 44 H 0.061 0.939 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.917 -1.954 2.843 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.152 4.152 4 C -0.030 4.030 5 O -0.227 6.227 6 C 0.072 3.928 7 C -0.179 4.179 8 C -0.118 4.118 9 C -0.130 4.130 10 C 0.308 3.692 11 O -0.472 6.472 12 N -0.183 5.183 13 C -0.472 4.472 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.536 5.536 17 Si 0.744 3.256 18 H -0.153 1.153 19 H -0.206 1.206 20 H -0.156 1.156 21 C 0.050 3.950 22 C -0.101 4.101 23 N -0.129 5.129 24 C -0.147 4.147 25 C 0.047 3.953 26 O -0.231 6.231 27 C -0.079 4.079 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.188 0.812 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.176 0.824 42 H 0.161 0.839 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.655 -2.924 1.810 26.876 hybrid contribution 1.245 0.635 0.427 1.462 sum -25.410 -2.289 2.237 25.611 Atomic orbital electron populations 1.21758 0.94948 1.02241 1.02074 1.21433 0.96614 0.94637 1.03014 1.21556 0.91509 0.98613 1.03487 1.23224 0.96321 0.80645 1.02803 1.86104 1.17240 1.31107 1.88230 1.18432 0.83722 0.90854 0.99753 1.21158 0.92127 0.98867 1.05745 1.21183 0.95624 0.95176 0.99851 1.19580 0.91737 0.94844 1.06851 1.18769 0.86739 0.80808 0.82844 1.90655 1.75676 1.39783 1.41114 1.43466 1.07491 1.30306 1.37014 1.18607 0.81880 1.51894 0.94797 0.93095 1.26229 0.96511 0.93940 1.01972 1.69820 1.10808 1.44576 1.28416 0.86173 0.80544 0.80970 0.77879 1.15278 1.20554 1.15632 1.19925 1.03632 0.77855 0.93625 1.29861 0.91956 0.94683 0.93555 1.81132 1.09628 1.13228 1.08944 1.21003 0.90785 0.99558 1.03329 1.18105 0.88108 0.86434 1.02631 1.86137 1.34001 1.13887 1.89038 1.23373 1.01024 0.81466 1.02019 0.92512 0.92680 0.91897 0.91248 0.90970 0.91003 0.91312 0.90302 0.90936 0.81173 0.85734 0.90556 0.87255 0.82367 0.83896 0.85432 0.91990 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.11 5.93 30.59 0.18 -0.93 16 3 C -0.11 -1.42 5.58 30.60 0.17 -1.25 16 4 C 0.04 0.67 4.74 71.99 0.34 1.01 16 5 O -0.31 -7.18 9.91 -77.32 -0.77 -7.94 16 6 C 0.12 3.03 6.71 22.70 0.15 3.18 16 7 C -0.16 -3.74 9.01 22.30 0.20 -3.54 16 8 C -0.10 -2.91 7.49 22.53 0.17 -2.74 16 9 C -0.13 -4.48 4.99 -20.09 -0.10 -4.58 16 10 C 0.52 23.85 7.19 86.69 0.62 24.48 16 11 O -0.59 -32.42 16.87 -4.09 -0.07 -32.49 16 12 N -0.46 -21.40 2.14 -649.06 -1.39 -22.79 16 13 C -0.34 -19.30 9.35 84.09 0.79 -18.51 16 14 H 0.05 3.39 7.88 -2.91 -0.02 3.37 16 15 C 0.02 0.93 5.36 84.95 0.46 1.38 16 16 N -0.90 -51.23 13.95 21.68 0.30 -50.93 16 17 Si 0.92 36.39 24.89 68.60 1.71 38.10 16 18 H -0.23 -7.59 6.73 99.48 0.67 -6.92 16 19 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.23 -8.42 7.11 99.48 0.71 -7.72 16 21 C 0.18 6.28 4.37 84.57 0.37 6.65 16 22 C 0.22 8.11 13.08 89.43 1.17 9.28 16 23 N -0.45 -17.72 18.54 20.02 0.37 -17.35 16 24 C -0.13 -4.01 8.69 22.62 0.20 -3.82 16 25 C 0.09 2.62 6.69 22.53 0.15 2.77 16 26 O -0.32 -8.24 10.28 -79.59 -0.82 -9.06 16 27 C 0.02 0.29 9.81 113.37 1.11 1.41 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.96 7.64 -2.39 -0.02 0.94 16 36 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 37 H 0.17 2.79 6.27 -2.91 -0.02 2.78 16 38 H 0.12 3.79 4.58 -2.91 -0.01 3.78 16 39 H 0.28 14.71 8.31 -92.70 -0.77 13.94 16 40 H 0.11 3.83 2.96 -2.39 -0.01 3.82 16 41 H 0.16 4.36 5.41 -2.39 -0.01 4.35 16 42 H 0.14 4.43 6.28 -2.91 -0.02 4.41 16 43 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.06 1.12 7.66 -2.39 -0.02 1.11 16 45 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 Total: -1.00 -73.82 373.87 7.02 -66.79 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.99 Total: 21.52 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.69 Total: 14.16 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -0.71 Total: -91.07 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.65 Total: -49.50 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 1.71 Total: 38.10 kcal Total: -73.82 7.02 -66.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.177 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds