Wall clock time and date at job start Tue Mar 31 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 H 1.08996 * 109.47446 * 305.00168 * 3 2 1 5 5 C 1.50704 * 109.46898 * 184.99879 * 3 2 1 6 6 O 1.21288 * 119.99614 * 240.00342 * 5 3 2 7 7 N 1.34773 * 119.99773 * 60.00542 * 5 3 2 8 8 C 1.39928 * 119.99635 * 174.79186 * 7 5 3 9 9 C 1.38962 * 120.03709 * 326.15671 * 8 7 5 10 10 C 1.38159 * 120.06238 * 179.71701 * 9 8 7 11 11 C 1.38163 * 120.14121 * 0.56138 * 10 9 8 12 12 C 1.38909 * 120.07032 * 359.71492 * 11 10 9 13 13 O 1.35746 * 120.03276 * 179.97438 * 12 11 10 14 14 C 1.34831 * 117.00105 * 185.92996 * 13 12 11 15 15 H 1.08001 * 119.99848 * 5.39945 * 14 13 12 16 16 C 1.38653 * 120.00098 * 185.40607 * 14 13 12 17 17 N 1.31556 * 120.00280 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46969 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47285 * 119.99666 * 18 16 14 21 21 H 1.48499 * 109.47494 * 240.00281 * 18 16 14 22 22 C 1.38711 * 120.03001 * 146.42904 * 8 7 5 23 23 N 1.46502 * 109.46645 * 65.00281 * 3 2 1 24 24 C 1.46760 * 124.34848 * 239.99992 * 23 3 2 25 25 C 1.54479 * 105.47486 * 162.96478 * 24 23 3 26 26 C 1.54630 * 101.76591 * 25.41342 * 25 24 23 27 27 C 1.34419 * 124.35031 * 59.97293 * 23 3 2 28 28 O 1.21276 * 124.94533 * 0.39645 * 27 23 3 29 29 H 1.09000 * 109.47136 * 59.99843 * 1 2 3 30 30 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47405 * 299.99714 * 1 2 3 32 32 H 1.09004 * 109.46667 * 240.00263 * 2 1 3 33 33 H 1.08998 * 109.47107 * 120.00935 * 2 1 3 34 34 H 0.96997 * 120.00522 * 354.79671 * 7 5 3 35 35 H 1.08002 * 119.96399 * 359.97438 * 9 8 7 36 36 H 1.07998 * 119.92589 * 180.25329 * 10 9 8 37 37 H 1.08005 * 119.96285 * 179.74617 * 11 10 9 38 38 H 0.96998 * 120.00189 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.07448 * 359.97438 * 22 8 7 40 40 H 1.09002 * 110.24792 * 43.96144 * 24 23 3 41 41 H 1.09000 * 110.24476 * 281.95878 * 24 23 3 42 42 H 1.08998 * 110.97208 * 143.53266 * 25 24 23 43 43 H 1.09003 * 110.96924 * 267.29270 * 25 24 23 44 44 H 1.09001 * 110.48806 * 93.88221 * 26 25 24 45 45 H 1.08999 * 110.48639 * 216.52966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 8 4.2216 1.9435 0.7479 7 7 4.1297 0.8911 -1.2031 8 6 5.5154 0.9884 -1.3719 9 6 6.1908 2.1231 -0.9393 10 6 7.5598 2.2172 -1.1004 11 6 8.2598 1.1893 -1.7022 12 6 7.5895 0.0548 -2.1420 13 8 8.2780 -0.9545 -2.7336 14 6 7.5549 -1.9700 -3.2471 15 1 6.4763 -1.9149 -3.2551 16 6 8.1959 -3.0852 -3.7647 17 7 9.5097 -3.1522 -3.7554 18 14 7.1940 -4.4925 -4.4755 19 1 5.7474 -4.1744 -4.3672 20 1 7.5536 -4.6844 -5.9034 21 1 7.4843 -5.7377 -3.7203 22 6 6.2153 -0.0454 -1.9764 23 7 1.6524 2.0974 1.2519 24 6 0.8075 3.2946 1.3331 25 6 0.3190 3.3558 2.7973 26 6 1.4360 2.5819 3.5350 27 6 2.0245 1.6786 2.4738 28 8 2.7290 0.7162 2.6935 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.5923 0.4257 -1.8630 35 1 5.6457 2.9304 -0.4730 36 1 8.0831 3.0984 -0.7597 37 1 9.3293 1.2676 -1.8304 38 1 9.9581 -3.9325 -4.1172 39 1 5.6921 -0.9266 -2.3171 40 1 -0.0415 3.2038 0.6556 41 1 1.3897 4.1841 1.0923 42 1 0.2623 4.3867 3.1469 43 1 -0.6423 2.8543 2.9090 44 1 2.1922 3.2705 3.9120 45 1 1.0169 1.9910 4.3493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072971517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:21 Heat of formation + Delta-G solvation = -62.743963 kcal Electronic energy + Delta-G solvation = -28611.266260 eV Core-core repulsion = 24594.829133 eV Total energy + Delta-G solvation = -4016.437127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.08233 -39.73902 -38.53320 -36.56362 -36.34005 -35.12807 -34.13671 -32.22076 -31.29703 -29.53396 -28.73093 -27.80323 -27.08878 -25.27591 -22.78818 -22.28732 -22.14899 -21.79139 -20.33866 -19.16988 -18.00539 -17.87048 -17.22918 -16.87822 -16.23383 -15.66108 -15.42187 -15.06575 -14.81706 -14.52630 -14.40393 -14.12225 -13.93241 -13.81440 -13.55860 -13.48332 -13.22387 -13.04844 -12.86786 -12.83195 -12.42683 -12.13443 -11.87392 -11.76363 -11.60137 -11.44164 -11.39395 -11.21682 -11.11932 -10.92827 -10.78380 -10.43392 -9.91692 -9.71828 -9.62367 -9.44384 -8.83045 -8.78489 -7.71052 -7.13844 -6.43671 -4.03239 1.98586 2.39050 2.48870 2.66863 2.84446 3.12378 3.13538 3.18706 3.35116 3.96834 4.10722 4.16056 4.46157 4.50917 4.59325 4.64970 4.65185 4.81436 4.95131 5.10320 5.11286 5.15927 5.25797 5.29580 5.35969 5.39306 5.51002 5.63090 5.64892 5.72172 5.80341 5.95791 6.00074 6.08982 6.24964 6.26606 6.32646 6.64725 6.96561 6.99013 7.00977 7.14115 7.32248 7.43718 7.69522 7.82807 8.00603 8.14164 8.33707 9.01829 9.72537 10.74581 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.002958 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.590505 B = 9462.120901 C =10578.687688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.147 3.853 4 H 0.115 0.885 5 C 0.500 3.500 6 O -0.498 6.498 7 N -0.668 5.668 8 C 0.183 3.817 9 C -0.205 4.205 10 C -0.063 4.063 11 C -0.201 4.201 12 C 0.169 3.831 13 O -0.176 6.176 14 C -0.391 4.391 15 H 0.090 0.910 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.255 4.255 23 N -0.607 5.607 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.524 3.476 28 O -0.511 6.511 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.405 0.595 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.797 12.492 7.343 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.039 3.961 4 H 0.132 0.868 5 C 0.284 3.716 6 O -0.370 6.370 7 N -0.314 5.314 8 C 0.090 3.910 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.220 4.220 12 C 0.115 3.885 13 O -0.080 6.080 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.277 4.277 23 N -0.343 5.343 24 C -0.018 4.018 25 C -0.167 4.167 26 C -0.195 4.195 27 C 0.312 3.688 28 O -0.385 6.385 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.240 0.760 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.534 12.117 7.954 25.958 hybrid contribution -0.772 -0.935 -0.753 1.428 sum -22.307 11.182 7.201 25.971 Atomic orbital electron populations 1.21699 0.94496 1.02181 1.01768 1.21940 0.97165 0.94074 1.04673 1.20836 0.91764 0.95823 0.87627 0.86756 1.20857 0.90409 0.78755 0.81556 1.90738 1.64585 1.43306 1.38365 1.43441 1.06990 1.56423 1.24542 1.17385 0.81391 0.93909 0.98272 1.20484 0.94627 0.98047 1.09439 1.20511 0.93341 0.97338 0.96980 1.20242 0.99938 0.93863 1.08007 1.19076 0.89772 0.89175 0.90514 1.84020 1.34170 1.26938 1.62846 1.21315 0.91242 0.95814 1.38369 0.89224 1.25279 0.96082 0.97869 0.97286 1.70045 1.07375 1.29474 1.42830 0.85662 0.79121 0.80069 0.78626 1.19189 1.20150 1.20155 1.20814 0.94660 0.99797 1.12403 1.47903 1.51893 1.29304 1.05162 1.22098 0.94111 0.87652 0.97989 1.22568 0.98459 1.01906 0.93806 1.22319 0.99455 0.99544 0.98148 1.20744 0.79415 0.84683 0.83984 1.90751 1.36169 1.28113 1.83457 0.92566 0.92137 0.92605 0.90151 0.89457 0.76001 0.86642 0.86678 0.86377 0.92074 0.85253 0.90314 0.91047 0.89159 0.89995 0.87777 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.80 37.16 0.36 -0.70 16 2 C -0.14 -1.42 5.30 -26.73 -0.14 -1.56 16 3 C 0.15 1.58 2.68 -69.08 -0.19 1.39 16 4 H 0.11 0.85 8.07 -51.93 -0.42 0.43 16 5 C 0.50 7.82 6.59 -10.99 -0.07 7.75 16 6 O -0.50 -9.86 12.59 -9.60 -0.12 -9.98 16 7 N -0.67 -10.46 5.25 -9.88 -0.05 -10.52 16 8 C 0.18 3.65 6.27 -83.72 -0.52 3.12 16 9 C -0.21 -4.10 8.65 -39.34 -0.34 -4.44 16 10 C -0.06 -1.23 10.03 -39.64 -0.40 -1.63 16 11 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 12 C 0.17 4.20 6.64 -39.13 -0.26 3.94 16 13 O -0.18 -5.10 9.76 0.06 0.00 -5.10 16 14 C -0.39 -10.98 9.44 30.89 0.29 -10.69 16 15 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 18 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 C -0.26 -5.70 9.04 -39.21 -0.35 -6.05 16 23 N -0.61 -6.36 2.08 -166.16 -0.35 -6.71 16 24 C 0.10 0.64 7.30 -3.12 -0.02 0.62 16 25 C -0.13 -0.62 7.18 -25.10 -0.18 -0.80 16 26 C -0.15 -1.27 6.86 -26.74 -0.18 -1.46 16 27 C 0.52 6.91 6.69 -10.86 -0.07 6.84 16 28 O -0.51 -9.39 15.34 -9.59 -0.15 -9.54 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.42 7.75 -51.93 -0.40 0.01 16 32 H 0.08 0.72 7.32 -51.93 -0.38 0.34 16 33 H 0.09 1.19 6.65 -51.93 -0.35 0.84 16 34 H 0.40 4.92 8.03 -40.82 -0.33 4.59 16 35 H 0.12 2.25 6.45 -52.49 -0.34 1.91 16 36 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 2.83 5.72 -52.49 -0.30 2.53 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -37.68 372.34 -8.04 -45.72 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.15 Total: 7.25 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.57 Total: -7.52 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.36 Total: -41.98 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.27 Total: -24.62 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.68 -8.04 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072971517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.025 kcal (2) G-P(sol) polarization free energy of solvation -37.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds