Wall clock time and date at job start Tue Mar 31 2020 17:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 H 1.08996 * 109.47446 * 305.00168 * 3 2 1 5 5 C 1.50704 * 109.46898 * 184.99879 * 3 2 1 6 6 O 1.21288 * 119.99614 * 240.00342 * 5 3 2 7 7 N 1.34773 * 119.99773 * 60.00542 * 5 3 2 8 8 C 1.39928 * 119.99635 * 174.79186 * 7 5 3 9 9 C 1.38962 * 120.03709 * 326.15671 * 8 7 5 10 10 C 1.38159 * 120.06238 * 179.71701 * 9 8 7 11 11 C 1.38163 * 120.14121 * 0.56138 * 10 9 8 12 12 C 1.38909 * 120.07032 * 359.71492 * 11 10 9 13 13 O 1.35746 * 120.03276 * 179.97438 * 12 11 10 14 14 C 1.34831 * 117.00105 * 185.92996 * 13 12 11 15 15 H 1.08001 * 119.99848 * 5.39945 * 14 13 12 16 16 C 1.38653 * 120.00098 * 185.40607 * 14 13 12 17 17 N 1.31556 * 120.00280 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46969 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47285 * 119.99666 * 18 16 14 21 21 H 1.48499 * 109.47494 * 240.00281 * 18 16 14 22 22 C 1.38711 * 120.03001 * 146.42904 * 8 7 5 23 23 N 1.46502 * 109.46645 * 65.00281 * 3 2 1 24 24 C 1.46760 * 124.34848 * 239.99992 * 23 3 2 25 25 C 1.54479 * 105.47486 * 162.96478 * 24 23 3 26 26 C 1.54630 * 101.76591 * 25.41342 * 25 24 23 27 27 C 1.34419 * 124.35031 * 59.97293 * 23 3 2 28 28 O 1.21276 * 124.94533 * 0.39645 * 27 23 3 29 29 H 1.09000 * 109.47136 * 59.99843 * 1 2 3 30 30 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47405 * 299.99714 * 1 2 3 32 32 H 1.09004 * 109.46667 * 240.00263 * 2 1 3 33 33 H 1.08998 * 109.47107 * 120.00935 * 2 1 3 34 34 H 0.96997 * 120.00522 * 354.79671 * 7 5 3 35 35 H 1.08002 * 119.96399 * 359.97438 * 9 8 7 36 36 H 1.07998 * 119.92589 * 180.25329 * 10 9 8 37 37 H 1.08005 * 119.96285 * 179.74617 * 11 10 9 38 38 H 0.96998 * 120.00189 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.07448 * 359.97438 * 22 8 7 40 40 H 1.09002 * 110.24792 * 43.96144 * 24 23 3 41 41 H 1.09000 * 110.24476 * 281.95878 * 24 23 3 42 42 H 1.08998 * 110.97208 * 143.53266 * 25 24 23 43 43 H 1.09003 * 110.96924 * 267.29270 * 25 24 23 44 44 H 1.09001 * 110.48806 * 93.88221 * 26 25 24 45 45 H 1.08999 * 110.48639 * 216.52966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 8 4.2216 1.9435 0.7479 7 7 4.1297 0.8911 -1.2031 8 6 5.5154 0.9884 -1.3719 9 6 6.1908 2.1231 -0.9393 10 6 7.5598 2.2172 -1.1004 11 6 8.2598 1.1893 -1.7022 12 6 7.5895 0.0548 -2.1420 13 8 8.2780 -0.9545 -2.7336 14 6 7.5549 -1.9700 -3.2471 15 1 6.4763 -1.9149 -3.2551 16 6 8.1959 -3.0852 -3.7647 17 7 9.5097 -3.1522 -3.7554 18 14 7.1940 -4.4925 -4.4755 19 1 5.7474 -4.1744 -4.3672 20 1 7.5536 -4.6844 -5.9034 21 1 7.4843 -5.7377 -3.7203 22 6 6.2153 -0.0454 -1.9764 23 7 1.6524 2.0974 1.2519 24 6 0.8075 3.2946 1.3331 25 6 0.3190 3.3558 2.7973 26 6 1.4360 2.5819 3.5350 27 6 2.0245 1.6786 2.4738 28 8 2.7290 0.7162 2.6935 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 3.5923 0.4257 -1.8630 35 1 5.6457 2.9304 -0.4730 36 1 8.0831 3.0984 -0.7597 37 1 9.3293 1.2676 -1.8304 38 1 9.9581 -3.9325 -4.1172 39 1 5.6921 -0.9266 -2.3171 40 1 -0.0415 3.2038 0.6556 41 1 1.3897 4.1841 1.0923 42 1 0.2623 4.3867 3.1469 43 1 -0.6423 2.8543 2.9090 44 1 2.1922 3.2705 3.9120 45 1 1.0169 1.9910 4.3493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072971517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:19 Heat of formation + Delta-G solvation = -88.159576 kcal Electronic energy + Delta-G solvation = -28612.368364 eV Core-core repulsion = 24594.829133 eV Total energy + Delta-G solvation = -4017.539231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.12433 -41.09504 -40.15805 -38.16520 -37.42587 -36.06274 -35.51451 -34.24701 -31.96260 -31.13459 -30.41277 -28.45952 -28.10607 -27.25938 -23.98141 -23.55576 -23.23164 -22.70200 -21.77744 -20.33302 -19.73601 -19.32387 -18.48482 -17.90027 -17.14274 -17.00157 -16.86224 -16.49658 -16.23735 -15.93395 -15.68313 -15.50900 -15.33249 -15.21325 -14.63238 -14.60253 -14.32819 -14.22653 -13.80456 -13.78498 -13.57613 -13.34624 -13.24073 -13.10512 -12.76554 -12.64315 -12.50566 -12.40746 -12.15872 -12.09933 -12.03449 -11.79035 -11.49002 -11.33067 -10.96674 -10.75784 -10.67976 -9.71054 -9.40296 -8.92058 -8.48596 -6.17557 0.35148 0.64807 1.34351 1.42141 1.46637 1.53021 1.57880 1.84577 2.16080 2.22024 2.80557 3.13516 3.37273 3.45647 3.55907 3.68886 3.78519 3.92227 4.07201 4.08769 4.20939 4.27556 4.34336 4.39605 4.44515 4.58699 4.68115 4.70377 4.71049 4.76141 4.88098 4.97319 5.02758 5.08567 5.11991 5.13546 5.25852 5.32354 5.33565 5.42008 5.56261 5.61491 5.63096 5.99256 6.12414 6.16384 6.38705 6.95594 7.04052 7.25447 7.74587 8.74783 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.002958 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.590505 B = 9462.120901 C =10578.687688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.151 3.849 4 H 0.162 0.838 5 C 0.494 3.506 6 O -0.543 6.543 7 N -0.660 5.660 8 C 0.188 3.812 9 C -0.200 4.200 10 C -0.052 4.052 11 C -0.215 4.215 12 C 0.135 3.865 13 O -0.226 6.226 14 C -0.413 4.413 15 H 0.103 0.897 16 C -0.023 4.023 17 N -0.920 5.920 18 Si 1.019 2.981 19 H -0.247 1.247 20 H -0.266 1.266 21 H -0.272 1.272 22 C -0.261 4.261 23 N -0.605 5.605 24 C 0.096 3.904 25 C -0.114 4.114 26 C -0.153 4.153 27 C 0.505 3.495 28 O -0.579 6.579 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.423 0.577 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.120 0.880 38 H 0.273 0.727 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.192 14.390 7.029 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.044 3.956 4 H 0.179 0.821 5 C 0.282 3.718 6 O -0.418 6.418 7 N -0.307 5.307 8 C 0.093 3.907 9 C -0.221 4.221 10 C -0.070 4.070 11 C -0.235 4.235 12 C 0.084 3.916 13 O -0.132 6.132 14 C -0.489 4.489 15 H 0.120 0.880 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.838 3.162 19 H -0.170 1.170 20 H -0.191 1.191 21 H -0.197 1.197 22 C -0.282 4.282 23 N -0.338 5.338 24 C -0.025 4.025 25 C -0.152 4.152 26 C -0.194 4.194 27 C 0.295 3.705 28 O -0.458 6.458 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.261 0.739 35 H 0.145 0.855 36 H 0.171 0.829 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -26.022 14.092 7.629 30.561 hybrid contribution 0.525 -1.270 -0.503 1.463 sum -25.497 12.822 7.126 29.416 Atomic orbital electron populations 1.21656 0.91801 1.02720 1.03122 1.21920 0.99390 0.93219 1.03090 1.21006 0.87934 0.97128 0.89534 0.82089 1.21904 0.92577 0.77077 0.80260 1.90714 1.66103 1.45228 1.39732 1.43452 1.05360 1.56548 1.25327 1.17466 0.83529 0.92975 0.96690 1.20796 0.94952 0.98134 1.08171 1.20911 0.93383 0.97597 0.95150 1.20480 1.00415 0.93958 1.08602 1.19599 0.91134 0.89312 0.91564 1.83985 1.35745 1.28355 1.65091 1.21855 0.92066 0.96166 1.38842 0.87958 1.26622 0.97363 1.00650 0.97407 1.70192 1.09642 1.30853 1.45121 0.84526 0.78208 0.75593 0.77854 1.17050 1.19109 1.19724 1.20847 0.93963 1.00546 1.12885 1.48141 1.51399 1.30067 1.04231 1.22486 0.94523 0.85763 0.99744 1.22622 0.97554 1.02930 0.92056 1.22371 1.00575 0.99059 0.97350 1.21680 0.78618 0.84284 0.85952 1.90705 1.39284 1.31130 1.84718 0.89721 0.92147 0.92578 0.89209 0.93686 0.73896 0.85504 0.82862 0.86159 0.91792 0.85333 0.86906 0.90669 0.86644 0.88197 0.87913 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.80 71.98 0.71 -0.84 16 2 C -0.14 -2.55 5.30 30.59 0.16 -2.39 16 3 C 0.15 2.85 2.68 44.25 0.12 2.97 16 4 H 0.16 1.55 8.07 -2.39 -0.02 1.53 16 5 C 0.49 14.85 6.59 87.66 0.58 15.43 16 6 O -0.54 -21.32 12.59 11.43 0.14 -21.18 16 7 N -0.66 -19.80 5.25 -303.55 -1.59 -21.39 16 8 C 0.19 7.39 6.27 38.13 0.24 7.62 16 9 C -0.20 -7.75 8.65 22.42 0.19 -7.56 16 10 C -0.05 -1.99 10.03 22.23 0.22 -1.76 16 11 C -0.21 -9.73 9.99 22.41 0.22 -9.51 16 12 C 0.14 7.01 6.64 22.56 0.15 7.16 16 13 O -0.23 -13.79 9.76 -22.70 -0.22 -14.01 16 14 C -0.41 -24.16 9.44 67.92 0.64 -23.52 16 15 H 0.10 5.44 5.30 -2.91 -0.02 5.42 16 16 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 17 N -0.92 -56.98 13.67 21.61 0.30 -56.68 16 18 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 19 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 C -0.26 -11.88 9.04 22.51 0.20 -11.68 16 23 N -0.60 -11.22 2.08 -798.20 -1.66 -12.88 16 24 C 0.10 0.77 7.30 86.83 0.63 1.40 16 25 C -0.11 -0.63 7.18 31.65 0.23 -0.40 16 26 C -0.15 -2.29 6.86 30.59 0.21 -2.08 16 27 C 0.50 13.10 6.69 87.90 0.59 13.68 16 28 O -0.58 -22.25 15.34 11.47 0.18 -22.07 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.65 7.75 -2.39 -0.02 0.63 16 32 H 0.09 1.44 7.32 -2.39 -0.02 1.42 16 33 H 0.04 1.24 6.65 -2.39 -0.02 1.23 16 34 H 0.42 9.45 8.03 -92.71 -0.74 8.71 16 35 H 0.13 4.71 6.45 -2.91 -0.02 4.69 16 36 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 37 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.13 5.75 5.72 -2.91 -0.02 5.74 16 40 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -90.68 372.34 5.02 -85.67 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.28 Total: 30.07 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 5.56 Total: -12.31 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -2.95 Total: -90.95 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: 0.10 Total: -57.27 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -90.68 5.02 -85.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072971517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.493 kcal (2) G-P(sol) polarization free energy of solvation -90.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds