Wall clock time and date at job start Tue Mar 31 2020 17:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46761 * 2 1 4 4 H 1.09003 * 109.66054 * 177.67113 * 3 2 1 5 5 C 1.50439 * 109.57146 * 57.37295 * 3 2 1 6 6 O 1.21286 * 118.48786 * 47.44566 * 5 3 2 7 7 N 1.33373 * 123.02333 * 227.47358 * 5 3 2 8 8 C 1.45647 * 124.59399 * 4.31516 * 7 5 3 9 9 C 1.52993 * 110.76699 * 338.10119 * 8 7 5 10 10 N 1.47050 * 109.56458 * 297.96429 * 3 2 1 11 11 C 1.34772 * 121.35524 * 342.58444 * 10 3 2 12 12 O 1.21281 * 120.00030 * 3.94739 * 11 10 3 13 13 C 1.50704 * 119.99762 * 183.94369 * 11 10 3 14 14 C 1.50698 * 109.46937 * 180.02562 * 13 11 10 15 15 C 1.38319 * 119.96721 * 89.99963 * 14 13 11 16 16 C 1.38290 * 120.14014 * 179.97438 * 15 14 13 17 17 C 1.38115 * 120.06639 * 0.02562 * 16 15 14 18 18 C 1.38862 * 119.93234 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06812 * 180.02562 * 18 17 16 20 20 C 1.34822 * 117.00088 * 5.58045 * 19 18 17 21 21 H 1.08000 * 120.00179 * 354.94417 * 20 19 18 22 22 C 1.38656 * 120.00184 * 174.95083 * 20 19 18 23 23 N 1.31559 * 120.00316 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99734 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46639 * 90.00800 * 24 22 20 26 26 H 1.48498 * 109.47053 * 210.00326 * 24 22 20 27 27 H 1.48498 * 109.47118 * 330.00886 * 24 22 20 28 28 C 1.38083 * 119.96676 * 269.73129 * 14 13 11 29 29 H 1.09002 * 109.47390 * 64.17938 * 1 2 3 30 30 H 1.09001 * 109.46998 * 184.17227 * 1 2 3 31 31 H 1.08994 * 109.47406 * 304.17718 * 1 2 3 32 32 H 1.08997 * 109.47496 * 240.00218 * 2 1 3 33 33 H 1.09000 * 109.46966 * 119.99392 * 2 1 3 34 34 H 0.97003 * 117.70761 * 184.03411 * 7 5 3 35 35 H 1.09002 * 109.21777 * 98.43004 * 8 7 5 36 36 H 1.08996 * 109.22160 * 217.77125 * 8 7 5 37 37 H 1.08992 * 109.72146 * 287.04804 * 9 8 7 38 38 H 1.09011 * 109.71432 * 166.39789 * 9 8 7 39 39 H 1.08998 * 109.47306 * 299.99777 * 13 11 10 40 40 H 1.09001 * 109.46847 * 60.00493 * 13 11 10 41 41 H 1.07998 * 119.93275 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.96395 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.03554 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00061 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.02978 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1292 1.4465 0.0417 5 6 1.4873 2.1724 1.1938 6 8 1.5492 1.6356 2.2796 7 7 0.9320 3.3823 1.1130 8 6 0.7073 4.1077 -0.1298 9 6 1.6359 3.5954 -1.2325 10 7 1.5915 2.1234 -1.2238 11 6 1.1570 1.4285 -2.2938 12 8 1.0625 0.2209 -2.2349 13 6 0.7886 2.1523 -3.5633 14 6 0.3368 1.1539 -4.5977 15 6 -0.9986 0.8037 -4.6831 16 6 -1.4171 -0.1117 -5.6313 17 6 -0.5021 -0.6798 -6.4960 18 6 0.8395 -0.3312 -6.4121 19 8 1.7411 -0.8874 -7.2609 20 6 1.2549 -1.6817 -8.2358 21 1 0.2012 -1.9163 -8.2659 22 6 2.1078 -2.1974 -9.1997 23 7 1.6333 -2.9721 -10.1513 24 14 3.9304 -1.7911 -9.1480 25 1 4.6411 -2.8077 -8.3314 26 1 4.4777 -1.7944 -10.5284 27 1 4.1213 -0.4485 -8.5428 28 6 1.2556 0.5936 -5.4629 29 1 -0.3634 0.4476 -0.9251 30 1 -0.3633 -1.0250 0.0748 31 1 -0.3634 0.5773 0.8501 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.6547 3.8074 1.9396 35 1 -0.3284 3.9730 -0.4417 36 1 0.8967 5.1685 0.0345 37 1 2.6544 3.9337 -1.0423 38 1 1.2985 3.9678 -2.1999 39 1 -0.0196 2.8547 -3.3596 40 1 1.6567 2.6955 -3.9368 41 1 -1.7161 1.2469 -4.0084 42 1 -2.4606 -0.3827 -5.6958 43 1 -0.8294 -1.3950 -7.2360 44 1 2.2300 -3.3326 -10.8259 45 1 2.2974 0.8709 -5.3988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089801261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:45 Heat of formation + Delta-G solvation = -39.735618 kcal Electronic energy + Delta-G solvation = -28857.254137 eV Core-core repulsion = 24841.814727 eV Total energy + Delta-G solvation = -4015.439410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46586 -39.63495 -38.93507 -36.95485 -36.67411 -34.83458 -33.52109 -32.38154 -31.72494 -29.63372 -29.46563 -27.99328 -26.43683 -25.13602 -24.56426 -22.40367 -21.89717 -21.33796 -20.16492 -18.87263 -17.83683 -17.73786 -17.59364 -17.06430 -16.44169 -16.31988 -15.58982 -15.56550 -15.19156 -14.76383 -14.40809 -14.27787 -14.07746 -13.72635 -13.59590 -13.46754 -13.33026 -13.02686 -12.85109 -12.56997 -12.45965 -12.27086 -12.16078 -11.84081 -11.56610 -11.35438 -11.25252 -10.93524 -10.85664 -10.78477 -10.73311 -10.42105 -10.15057 -9.58633 -9.38452 -9.18399 -8.88585 -8.85847 -8.15537 -7.36032 -6.39783 -4.06671 1.95181 2.23470 2.27794 2.49808 2.51318 2.88771 3.23377 3.26632 3.40237 3.99799 4.13326 4.24871 4.34802 4.50816 4.58284 4.68024 4.71950 4.84335 4.87642 4.94094 5.05495 5.11730 5.21895 5.27111 5.36572 5.48364 5.63514 5.66337 5.74015 5.81312 5.84851 6.11398 6.13378 6.24541 6.29235 6.38650 6.47566 6.51617 6.77565 6.82728 7.06774 7.09525 7.20053 7.31953 7.60545 7.77868 7.81769 8.05513 8.10036 8.95619 9.58293 10.68037 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002758 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.971585 B =10151.567266 C =10414.272800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.139 3.861 4 H 0.102 0.898 5 C 0.518 3.482 6 O -0.542 6.542 7 N -0.721 5.721 8 C 0.095 3.905 9 C 0.091 3.909 10 N -0.623 5.623 11 C 0.519 3.481 12 O -0.492 6.492 13 C -0.093 4.093 14 C -0.037 4.037 15 C -0.187 4.187 16 C -0.075 4.075 17 C -0.216 4.216 18 C 0.161 3.839 19 O -0.219 6.219 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.174 4.174 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 17.907 18.623 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.033 3.967 4 H 0.120 0.880 5 C 0.304 3.696 6 O -0.419 6.419 7 N -0.373 5.373 8 C -0.031 4.031 9 C -0.033 4.033 10 N -0.361 5.361 11 C 0.308 3.692 12 O -0.365 6.365 13 C -0.133 4.133 14 C -0.037 4.037 15 C -0.206 4.206 16 C -0.094 4.094 17 C -0.235 4.235 18 C 0.109 3.891 19 O -0.124 6.124 20 C -0.464 4.464 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.519 5.519 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.184 1.184 28 C -0.193 4.193 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.039 16.698 18.759 25.136 hybrid contribution 0.488 0.435 0.205 0.685 sum -0.551 17.134 18.964 25.564 Atomic orbital electron populations 1.21868 0.95192 1.01860 1.00859 1.22131 0.97521 0.91760 1.04775 1.21480 0.99740 0.94657 0.80815 0.88021 1.20457 0.77200 0.80981 0.90996 1.90781 1.57405 1.65097 1.28582 1.45382 1.62918 1.18632 1.10383 1.21777 1.00311 0.96550 0.84434 1.22111 1.00706 0.80178 1.00312 1.48272 1.67028 1.06320 1.14479 1.20717 0.76449 0.88097 0.83902 1.90707 1.50064 1.13922 1.81843 1.20659 1.02988 0.97953 0.91665 1.18614 0.93377 0.97010 0.94725 1.20390 0.94622 1.03486 1.02109 1.20734 0.98384 0.95669 0.94582 1.21302 0.93119 1.05434 1.03693 1.19007 0.88683 0.91169 0.90254 1.83564 1.33389 1.57126 1.38343 1.20760 0.96991 1.25095 1.03551 0.87656 1.24458 1.00077 0.95451 0.94010 1.69648 1.36610 1.31746 1.13923 0.86184 0.83212 0.80204 0.77311 1.19888 1.20859 1.18395 1.19927 0.99039 1.01220 0.99120 0.91680 0.92674 0.94628 0.86013 0.91532 0.76580 0.91044 0.89118 0.89942 0.87193 0.88378 0.88129 0.87838 0.87219 0.85020 0.91090 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.85 37.16 0.33 -1.55 16 2 C -0.12 -1.59 4.90 -26.73 -0.13 -1.72 16 3 C 0.14 1.45 3.38 -68.91 -0.23 1.22 16 4 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 5 C 0.52 5.47 5.94 -11.74 -0.07 5.40 16 6 O -0.54 -7.74 17.13 5.55 0.10 -7.65 16 7 N -0.72 -4.93 5.42 -61.32 -0.33 -5.27 16 8 C 0.09 0.35 7.34 -4.50 -0.03 0.32 16 9 C 0.09 0.41 6.44 -3.63 -0.02 0.38 16 10 N -0.62 -5.55 2.84 -166.54 -0.47 -6.02 16 11 C 0.52 6.18 6.44 -10.99 -0.07 6.11 16 12 O -0.49 -7.85 10.31 5.56 0.06 -7.79 16 13 C -0.09 -0.98 4.21 -29.03 -0.12 -1.11 16 14 C -0.04 -0.58 4.37 -104.65 -0.46 -1.04 16 15 C -0.19 -3.04 9.70 -39.53 -0.38 -3.42 16 16 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 17 C -0.22 -4.69 9.17 -39.40 -0.36 -5.05 16 18 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 19 O -0.22 -5.80 8.59 0.06 0.00 -5.80 16 20 C -0.39 -10.99 9.95 30.89 0.31 -10.69 16 21 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 22 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 23 N -0.88 -25.57 13.96 55.48 0.77 -24.80 16 24 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.26 -6.21 7.11 56.52 0.40 -5.80 16 28 C -0.17 -3.37 9.64 -39.39 -0.38 -3.75 16 29 H 0.06 0.92 5.28 -51.93 -0.27 0.65 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.47 6.91 -51.93 -0.36 0.11 16 32 H 0.12 1.79 5.58 -52.86 -0.29 1.49 16 33 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 34 H 0.40 2.29 8.80 -40.82 -0.36 1.93 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.11 0.28 6.04 -51.92 -0.31 -0.03 16 39 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 40 H 0.10 0.85 7.92 -51.93 -0.41 0.44 16 41 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.13 3.00 5.64 -52.49 -0.30 2.71 16 44 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -34.87 361.12 -7.60 -42.47 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.92 Total: 4.06 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.38 Total: -11.52 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.03 Total: -36.08 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.15 Total: -21.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.87 -7.60 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089801261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.735 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds