Wall clock time and date at job start Tue Mar 31 2020 17:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46761 * 2 1 4 4 H 1.09003 * 109.66054 * 177.67113 * 3 2 1 5 5 C 1.50439 * 109.57146 * 57.37295 * 3 2 1 6 6 O 1.21286 * 118.48786 * 47.44566 * 5 3 2 7 7 N 1.33373 * 123.02333 * 227.47358 * 5 3 2 8 8 C 1.45647 * 124.59399 * 4.31516 * 7 5 3 9 9 C 1.52993 * 110.76699 * 338.10119 * 8 7 5 10 10 N 1.47050 * 109.56458 * 297.96429 * 3 2 1 11 11 C 1.34772 * 121.35524 * 342.58444 * 10 3 2 12 12 O 1.21281 * 120.00030 * 3.94739 * 11 10 3 13 13 C 1.50704 * 119.99762 * 183.94369 * 11 10 3 14 14 C 1.50698 * 109.46937 * 180.02562 * 13 11 10 15 15 C 1.38319 * 119.96721 * 89.99963 * 14 13 11 16 16 C 1.38290 * 120.14014 * 179.97438 * 15 14 13 17 17 C 1.38115 * 120.06639 * 0.02562 * 16 15 14 18 18 C 1.38862 * 119.93234 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06812 * 180.02562 * 18 17 16 20 20 C 1.34822 * 117.00088 * 5.58045 * 19 18 17 21 21 H 1.08000 * 120.00179 * 354.94417 * 20 19 18 22 22 C 1.38656 * 120.00184 * 174.95083 * 20 19 18 23 23 N 1.31559 * 120.00316 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99734 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46639 * 90.00800 * 24 22 20 26 26 H 1.48498 * 109.47053 * 210.00326 * 24 22 20 27 27 H 1.48498 * 109.47118 * 330.00886 * 24 22 20 28 28 C 1.38083 * 119.96676 * 269.73129 * 14 13 11 29 29 H 1.09002 * 109.47390 * 64.17938 * 1 2 3 30 30 H 1.09001 * 109.46998 * 184.17227 * 1 2 3 31 31 H 1.08994 * 109.47406 * 304.17718 * 1 2 3 32 32 H 1.08997 * 109.47496 * 240.00218 * 2 1 3 33 33 H 1.09000 * 109.46966 * 119.99392 * 2 1 3 34 34 H 0.97003 * 117.70761 * 184.03411 * 7 5 3 35 35 H 1.09002 * 109.21777 * 98.43004 * 8 7 5 36 36 H 1.08996 * 109.22160 * 217.77125 * 8 7 5 37 37 H 1.08992 * 109.72146 * 287.04804 * 9 8 7 38 38 H 1.09011 * 109.71432 * 166.39789 * 9 8 7 39 39 H 1.08998 * 109.47306 * 299.99777 * 13 11 10 40 40 H 1.09001 * 109.46847 * 60.00493 * 13 11 10 41 41 H 1.07998 * 119.93275 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.96395 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.03554 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00061 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.02978 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1292 1.4465 0.0417 5 6 1.4873 2.1724 1.1938 6 8 1.5492 1.6356 2.2796 7 7 0.9320 3.3823 1.1130 8 6 0.7073 4.1077 -0.1298 9 6 1.6359 3.5954 -1.2325 10 7 1.5915 2.1234 -1.2238 11 6 1.1570 1.4285 -2.2938 12 8 1.0625 0.2209 -2.2349 13 6 0.7886 2.1523 -3.5633 14 6 0.3368 1.1539 -4.5977 15 6 -0.9986 0.8037 -4.6831 16 6 -1.4171 -0.1117 -5.6313 17 6 -0.5021 -0.6798 -6.4960 18 6 0.8395 -0.3312 -6.4121 19 8 1.7411 -0.8874 -7.2609 20 6 1.2549 -1.6817 -8.2358 21 1 0.2012 -1.9163 -8.2659 22 6 2.1078 -2.1974 -9.1997 23 7 1.6333 -2.9721 -10.1513 24 14 3.9304 -1.7911 -9.1480 25 1 4.6411 -2.8077 -8.3314 26 1 4.4777 -1.7944 -10.5284 27 1 4.1213 -0.4485 -8.5428 28 6 1.2556 0.5936 -5.4629 29 1 -0.3634 0.4476 -0.9251 30 1 -0.3633 -1.0250 0.0748 31 1 -0.3634 0.5773 0.8501 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.6547 3.8074 1.9396 35 1 -0.3284 3.9730 -0.4417 36 1 0.8967 5.1685 0.0345 37 1 2.6544 3.9337 -1.0423 38 1 1.2985 3.9678 -2.1999 39 1 -0.0196 2.8547 -3.3596 40 1 1.6567 2.6955 -3.9368 41 1 -1.7161 1.2469 -4.0084 42 1 -2.4606 -0.3827 -5.6958 43 1 -0.8294 -1.3950 -7.2360 44 1 2.2300 -3.3326 -10.8259 45 1 2.2974 0.8709 -5.3988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089801261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:44 Heat of formation + Delta-G solvation = -65.179973 kcal Electronic energy + Delta-G solvation = -28858.357487 eV Core-core repulsion = 24841.814727 eV Total energy + Delta-G solvation = -4016.542760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25215 -40.92520 -40.18885 -38.36012 -37.54765 -35.65481 -34.53326 -34.35761 -32.92230 -31.03907 -30.22507 -29.06681 -27.55066 -27.02601 -25.18272 -23.42256 -23.13635 -22.70831 -21.27905 -19.72848 -19.51215 -18.83293 -18.47510 -18.26609 -17.22999 -17.11264 -16.83523 -16.66895 -16.24942 -16.15555 -15.75662 -15.58577 -15.15056 -15.08334 -14.90689 -14.54300 -14.36347 -14.19559 -14.03328 -13.90045 -13.65921 -13.42736 -13.01771 -12.87979 -12.68308 -12.56132 -12.45304 -12.40719 -12.33474 -12.15808 -11.91239 -11.86034 -11.34095 -11.27246 -10.90564 -10.19104 -10.09407 -9.67599 -9.57114 -9.02631 -8.49044 -6.21740 0.51686 0.74171 1.31026 1.36186 1.45133 1.51475 1.66534 1.78345 2.24690 2.28608 2.78753 3.07293 3.15838 3.40990 3.65386 3.80726 3.89935 4.01470 4.04944 4.11732 4.22628 4.29777 4.34000 4.46358 4.49658 4.57808 4.64753 4.68363 4.69160 4.74628 4.77680 4.97092 5.01995 5.04059 5.17304 5.28369 5.29377 5.42077 5.50190 5.68371 5.76547 5.79133 5.79688 5.94115 6.18797 6.27253 6.39210 6.85481 7.08908 7.26454 7.61127 8.62916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002758 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.971585 B =10151.567266 C =10414.272800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.140 3.860 4 H 0.111 0.889 5 C 0.517 3.483 6 O -0.590 6.590 7 N -0.709 5.709 8 C 0.089 3.911 9 C 0.080 3.920 10 N -0.613 5.613 11 C 0.517 3.483 12 O -0.544 6.544 13 C -0.088 4.088 14 C -0.025 4.025 15 C -0.167 4.167 16 C -0.080 4.080 17 C -0.242 4.242 18 C 0.118 3.882 19 O -0.248 6.248 20 C -0.398 4.398 21 H 0.078 0.922 22 C 0.008 3.992 23 N -0.926 5.926 24 Si 0.972 3.028 25 H -0.270 1.270 26 H -0.266 1.266 27 H -0.259 1.259 28 C -0.177 4.177 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.406 0.594 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.148 0.852 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.284 0.716 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 22.558 20.693 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.128 0.872 5 C 0.303 3.697 6 O -0.470 6.470 7 N -0.359 5.359 8 C -0.035 4.035 9 C -0.041 4.041 10 N -0.350 5.350 11 C 0.307 3.693 12 O -0.422 6.422 13 C -0.127 4.127 14 C -0.025 4.025 15 C -0.185 4.185 16 C -0.098 4.098 17 C -0.261 4.261 18 C 0.069 3.931 19 O -0.155 6.155 20 C -0.474 4.474 21 H 0.096 0.904 22 C -0.190 4.190 23 N -0.567 5.567 24 Si 0.794 3.206 25 H -0.195 1.195 26 H -0.191 1.191 27 H -0.183 1.183 28 C -0.197 4.197 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.099 0.901 36 H 0.149 0.851 37 H 0.117 0.883 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.010 21.460 20.851 29.939 hybrid contribution 0.242 -0.798 -0.177 0.853 sum -0.769 20.662 20.674 29.239 Atomic orbital electron populations 1.21754 0.95526 1.00981 1.00437 1.21978 0.97163 0.93640 1.03175 1.21325 1.00212 0.93365 0.81784 0.87167 1.20390 0.77354 0.81886 0.90060 1.90764 1.59601 1.66634 1.30037 1.45397 1.60914 1.17368 1.12237 1.22121 1.00631 0.98150 0.82561 1.22594 1.02311 0.76904 1.02319 1.48249 1.65565 1.08266 1.12871 1.20937 0.76035 0.87564 0.84748 1.90729 1.52534 1.16146 1.82769 1.20788 1.05998 0.96883 0.89059 1.19187 0.92657 0.96450 0.94255 1.20986 0.95750 1.01159 1.00652 1.21088 0.99065 0.95608 0.94048 1.21302 0.93821 1.06231 1.04733 1.19626 0.89136 0.93056 0.91267 1.83499 1.34276 1.58566 1.39202 1.20693 0.96149 1.25891 1.04685 0.90431 1.25296 1.04638 0.95428 0.93617 1.69736 1.38300 1.33571 1.15130 0.85205 0.77611 0.79791 0.78024 1.19481 1.19061 1.18311 1.20290 1.00483 1.00310 0.98581 0.91913 0.93959 0.94750 0.87980 0.92640 0.75781 0.90130 0.85131 0.88258 0.84082 0.83613 0.85023 0.83444 0.84646 0.87957 0.90617 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.85 71.98 0.64 -2.75 16 2 C -0.12 -3.10 4.90 30.60 0.15 -2.95 16 3 C 0.14 2.64 3.38 44.06 0.15 2.79 16 4 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.52 9.82 5.94 87.79 0.52 10.35 16 6 O -0.59 -16.48 17.13 -3.05 -0.05 -16.53 16 7 N -0.71 -6.97 5.42 -467.09 -2.53 -9.50 16 8 C 0.09 0.12 7.34 86.54 0.63 0.76 16 9 C 0.08 0.22 6.44 86.23 0.56 0.78 16 10 N -0.61 -8.37 2.84 -799.20 -2.27 -10.64 16 11 C 0.52 10.27 6.44 87.66 0.56 10.84 16 12 O -0.54 -16.44 10.31 -3.03 -0.03 -16.47 16 13 C -0.09 -1.34 4.21 29.10 0.12 -1.21 16 14 C -0.02 -0.70 4.37 -19.88 -0.09 -0.79 16 15 C -0.17 -4.76 9.70 22.30 0.22 -4.54 16 16 C -0.08 -2.80 10.04 22.25 0.22 -2.57 16 17 C -0.24 -10.95 9.17 22.39 0.21 -10.74 16 18 C 0.12 5.62 6.65 22.58 0.15 5.77 16 19 O -0.25 -13.77 8.59 -22.71 -0.19 -13.97 16 20 C -0.40 -24.04 9.95 67.92 0.68 -23.37 16 21 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 22 C 0.01 0.48 5.49 84.83 0.47 0.94 16 23 N -0.93 -56.43 13.96 21.61 0.30 -56.13 16 24 Si 0.97 46.15 28.62 68.60 1.96 48.11 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 28 C -0.18 -6.68 9.64 22.39 0.22 -6.46 16 29 H 0.06 1.66 5.28 -2.39 -0.01 1.65 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 0.87 6.91 -2.39 -0.02 0.86 16 32 H 0.10 3.07 5.58 -17.03 -0.10 2.97 16 33 H 0.06 1.48 7.95 -2.39 -0.02 1.46 16 34 H 0.41 3.24 8.80 -92.71 -0.82 2.43 16 35 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.14 -0.43 6.04 -2.38 -0.01 -0.44 16 39 H 0.15 0.92 7.66 -2.39 -0.02 0.91 16 40 H 0.13 1.31 7.92 -2.39 -0.02 1.30 16 41 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 43 H 0.10 5.15 5.64 -2.91 -0.02 5.13 16 44 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -85.39 361.12 2.73 -82.67 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.14 Total: 15.63 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 5.40 Total: -23.17 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -4.50 Total: -76.27 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.28 Total: -46.97 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.96 Total: 48.11 kcal Total: -85.39 2.73 -82.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089801261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.489 kcal (2) G-P(sol) polarization free energy of solvation -85.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds