Wall clock time and date at job start Tue Mar 31 2020 17:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 H 1.08997 * 109.66341 * 55.29606 * 3 2 1 5 5 C 1.50436 * 109.56802 * 175.59128 * 3 2 1 6 6 O 1.21284 * 118.49007 * 287.09381 * 5 3 2 7 7 N 1.33384 * 123.02302 * 107.11107 * 5 3 2 8 8 C 1.45652 * 124.58590 * 4.32381 * 7 5 3 9 9 C 1.53465 * 110.74034 * 337.97750 * 8 7 5 10 10 N 1.47052 * 109.56476 * 294.99815 * 3 2 1 11 11 C 1.34779 * 121.35165 * 102.89531 * 10 3 2 12 12 O 1.21281 * 119.99888 * 359.97438 * 11 10 3 13 13 C 1.50693 * 119.99862 * 179.97438 * 11 10 3 14 14 C 1.50703 * 109.47372 * 179.97438 * 13 11 10 15 15 C 1.38331 * 119.96329 * 89.99796 * 14 13 11 16 16 C 1.38276 * 120.13719 * 180.02562 * 15 14 13 17 17 C 1.38116 * 120.07025 * 0.02562 * 16 15 14 18 18 C 1.38853 * 119.93234 * 0.02562 * 17 16 15 19 19 O 1.35750 * 120.07292 * 180.02562 * 18 17 16 20 20 C 1.34831 * 116.99804 * 354.43883 * 19 18 17 21 21 H 1.07998 * 119.99992 * 5.05784 * 20 19 18 22 22 C 1.38657 * 120.00336 * 185.05819 * 20 19 18 23 23 N 1.31563 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00234 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47279 * 60.00220 * 24 22 20 26 26 H 1.48506 * 109.47141 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47437 * 299.99925 * 24 22 20 28 28 C 1.38073 * 119.97000 * 270.02959 * 14 13 11 29 29 H 1.09000 * 109.46528 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47131 * 300.00223 * 1 2 3 31 31 H 1.08996 * 109.46812 * 60.00019 * 1 2 3 32 32 H 1.09001 * 109.47014 * 240.00174 * 2 1 3 33 33 H 1.08996 * 109.47152 * 119.99556 * 2 1 3 34 34 H 0.96991 * 117.70905 * 184.34454 * 7 5 3 35 35 H 1.08997 * 109.21854 * 98.43406 * 8 7 5 36 36 H 1.09004 * 109.21155 * 217.76185 * 8 7 5 37 37 H 1.08998 * 109.84905 * 287.31340 * 9 8 7 38 38 H 1.08998 * 109.84106 * 166.50723 * 9 8 7 39 39 H 1.09004 * 109.47186 * 60.00424 * 13 11 10 40 40 H 1.08997 * 109.47513 * 300.00303 * 13 11 10 41 41 H 1.08000 * 119.93154 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.95959 * 179.72701 * 16 15 14 43 43 H 1.08000 * 120.03367 * 179.97438 * 17 16 15 44 44 H 0.96997 * 119.99776 * 179.97438 * 23 22 20 45 45 H 1.08003 * 120.03362 * 359.95128 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6113 1.9831 0.8438 5 6 3.5404 1.4466 0.1090 6 8 4.0438 1.1610 1.1748 7 7 4.3426 1.7501 -0.9126 8 6 3.8830 2.1983 -2.2199 9 6 2.4294 1.7692 -2.4614 10 7 1.6521 2.1020 -1.2558 11 6 0.6233 2.9715 -1.3026 12 8 -0.0038 3.2236 -0.2956 13 6 0.2523 3.6303 -2.6061 14 6 -0.9221 4.5492 -2.3882 15 6 -0.7097 5.8726 -2.0459 16 6 -1.7847 6.7187 -1.8446 17 6 -3.0743 6.2445 -1.9843 18 6 -3.2909 4.9164 -2.3267 19 8 -4.5572 4.4474 -2.4652 20 6 -5.5603 5.2895 -2.1448 21 1 -5.3414 6.3120 -1.8747 22 6 -6.8728 4.8428 -2.1621 23 7 -7.1395 3.5974 -2.4916 24 14 -8.2624 6.0093 -1.7175 25 1 -8.2626 7.1596 -2.6566 26 1 -9.5596 5.2926 -1.8116 27 1 -8.0697 6.5029 -0.3302 28 6 -2.2090 4.0693 -2.5297 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.2991 1.6661 -0.7753 35 1 3.9517 3.2849 -2.2713 36 1 4.5172 1.7625 -2.9919 37 1 2.3858 0.6953 -2.6424 38 1 2.0236 2.3042 -3.3200 39 1 -0.0152 2.8664 -3.3361 40 1 1.1005 4.2058 -2.9767 41 1 0.2978 6.2457 -1.9357 42 1 -1.6156 7.7504 -1.5732 43 1 -3.9135 6.9058 -1.8265 44 1 -8.0576 3.2848 -2.5033 45 1 -2.3742 3.0360 -2.7972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089801262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:50 Heat of formation + Delta-G solvation = -67.229735 kcal Electronic energy + Delta-G solvation = -28505.137015 eV Core-core repulsion = 24488.505370 eV Total energy + Delta-G solvation = -4016.631645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.19860 -39.51595 -38.72993 -36.91098 -36.39135 -35.17374 -33.25528 -32.30491 -31.79569 -29.73850 -29.22007 -28.01537 -26.45418 -25.19027 -24.30597 -22.45364 -21.73719 -21.36637 -20.13916 -18.90417 -17.82392 -17.72086 -17.37370 -16.91351 -16.60649 -16.15749 -15.56156 -15.18770 -15.01437 -14.64014 -14.54445 -14.34804 -14.21218 -13.90232 -13.55252 -13.46594 -13.10725 -12.87361 -12.59179 -12.47726 -12.41927 -12.33789 -11.98000 -11.86483 -11.55700 -11.49970 -11.24590 -11.13445 -10.82999 -10.76537 -10.61520 -10.46819 -10.42673 -9.78237 -9.56868 -9.31827 -8.92242 -8.80356 -8.05906 -7.19804 -6.41265 -4.00295 2.04918 2.22151 2.39891 2.54853 2.62993 2.89758 3.15195 3.17335 3.19342 3.99089 4.00597 4.17654 4.41264 4.56297 4.63529 4.68348 4.81599 4.85678 4.90419 5.05316 5.14051 5.16949 5.18102 5.27001 5.42161 5.42224 5.58998 5.63874 5.74850 5.80675 5.87261 5.93680 6.03092 6.19179 6.25609 6.34713 6.35258 6.66403 6.83779 6.92759 7.09177 7.11536 7.26606 7.38912 7.46310 7.77323 7.84151 8.03662 8.12747 9.04518 9.74830 10.76928 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002643 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.654866 B =10589.843500 C =11268.332818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.132 3.868 4 H 0.130 0.870 5 C 0.520 3.480 6 O -0.545 6.545 7 N -0.719 5.719 8 C 0.095 3.905 9 C 0.090 3.910 10 N -0.623 5.623 11 C 0.521 3.479 12 O -0.504 6.504 13 C -0.091 4.091 14 C -0.035 4.035 15 C -0.196 4.196 16 C -0.074 4.074 17 C -0.230 4.230 18 C 0.155 3.845 19 O -0.179 6.179 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.173 4.173 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.793 -4.347 -3.422 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.026 3.974 4 H 0.148 0.852 5 C 0.306 3.694 6 O -0.421 6.421 7 N -0.371 5.371 8 C -0.031 4.031 9 C -0.034 4.034 10 N -0.361 5.361 11 C 0.310 3.690 12 O -0.376 6.376 13 C -0.131 4.131 14 C -0.036 4.036 15 C -0.215 4.215 16 C -0.092 4.092 17 C -0.249 4.249 18 C 0.101 3.899 19 O -0.083 6.083 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.192 4.192 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 21.105 -4.671 -2.437 21.752 hybrid contribution -0.210 0.639 0.112 0.682 sum 20.895 -4.032 -2.324 21.407 Atomic orbital electron populations 1.21690 0.93630 1.01840 1.03189 1.21754 0.97842 0.93340 1.03033 1.21387 0.89726 0.96398 0.89899 0.85225 1.20352 0.89889 0.75795 0.83397 1.90790 1.75604 1.48944 1.26782 1.45359 1.10508 1.68435 1.12783 1.21878 0.96074 1.00530 0.84599 1.22198 0.89914 1.02420 0.88877 1.48385 1.33830 1.45184 1.08697 1.20819 0.78569 0.77983 0.91618 1.90787 1.49955 1.60655 1.36219 1.20621 0.98474 0.99013 0.94948 1.18630 0.91862 0.93281 0.99837 1.20330 0.97639 0.93698 1.09862 1.20676 0.92373 0.98324 0.97877 1.21180 0.97301 0.96300 1.10156 1.19264 0.86398 0.91775 0.92427 1.83972 1.09887 1.40632 1.73787 1.21264 0.84197 0.93574 1.47710 0.89183 1.25268 0.97571 0.96867 0.96770 1.70031 1.20525 1.14900 1.44495 0.85798 0.79267 0.79180 0.79285 1.19534 1.20302 1.19512 1.19919 0.90094 0.98995 1.10228 0.92293 0.91848 0.92417 0.91539 0.89985 0.76499 0.90919 0.89129 0.89918 0.87185 0.88118 0.88330 0.88019 0.87495 0.85629 0.92040 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.12 -1.20 5.50 -26.73 -0.15 -1.34 16 3 C 0.13 1.48 2.46 -68.91 -0.17 1.31 16 4 H 0.13 1.79 7.23 -51.93 -0.38 1.41 16 5 C 0.52 5.70 7.10 -11.73 -0.08 5.62 16 6 O -0.54 -7.99 17.80 5.55 0.10 -7.89 16 7 N -0.72 -5.11 5.42 -61.06 -0.33 -5.45 16 8 C 0.09 0.39 7.35 -4.26 -0.03 0.36 16 9 C 0.09 0.47 6.34 -3.39 -0.02 0.45 16 10 N -0.62 -6.14 2.25 -166.27 -0.37 -6.52 16 11 C 0.52 7.01 6.76 -10.99 -0.07 6.93 16 12 O -0.50 -9.31 15.59 5.56 0.09 -9.22 16 13 C -0.09 -1.08 4.20 -29.04 -0.12 -1.20 16 14 C -0.04 -0.62 4.37 -104.65 -0.46 -1.07 16 15 C -0.20 -3.43 9.70 -39.53 -0.38 -3.81 16 16 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 17 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 18 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 19 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 20 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 21 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 22 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 24 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 C -0.17 -3.67 9.64 -39.40 -0.38 -4.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.74 7.06 -51.93 -0.37 0.37 16 32 H 0.07 0.55 7.33 -51.93 -0.38 0.17 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 2.34 8.80 -40.82 -0.36 1.98 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.08 0.36 7.38 -51.93 -0.38 -0.03 16 38 H 0.11 0.37 6.03 -51.93 -0.31 0.06 16 39 H 0.10 0.97 7.76 -51.93 -0.40 0.57 16 40 H 0.10 0.84 7.83 -51.93 -0.41 0.44 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -36.84 372.76 -7.57 -44.41 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.07 Total: 4.96 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.33 Total: -11.68 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.05 Total: -36.80 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.19 Total: -22.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.84 -7.57 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089801262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.816 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds