Wall clock time and date at job start Tue Mar 31 2020 17:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 H 1.08997 * 109.66341 * 55.29606 * 3 2 1 5 5 C 1.50436 * 109.56802 * 175.59128 * 3 2 1 6 6 O 1.21284 * 118.49007 * 287.09381 * 5 3 2 7 7 N 1.33384 * 123.02302 * 107.11107 * 5 3 2 8 8 C 1.45652 * 124.58590 * 4.32381 * 7 5 3 9 9 C 1.53465 * 110.74034 * 337.97750 * 8 7 5 10 10 N 1.47052 * 109.56476 * 294.99815 * 3 2 1 11 11 C 1.34779 * 121.35165 * 102.89531 * 10 3 2 12 12 O 1.21281 * 119.99888 * 359.97438 * 11 10 3 13 13 C 1.50693 * 119.99862 * 179.97438 * 11 10 3 14 14 C 1.50703 * 109.47372 * 179.97438 * 13 11 10 15 15 C 1.38331 * 119.96329 * 89.99796 * 14 13 11 16 16 C 1.38276 * 120.13719 * 180.02562 * 15 14 13 17 17 C 1.38116 * 120.07025 * 0.02562 * 16 15 14 18 18 C 1.38853 * 119.93234 * 0.02562 * 17 16 15 19 19 O 1.35750 * 120.07292 * 180.02562 * 18 17 16 20 20 C 1.34831 * 116.99804 * 354.43883 * 19 18 17 21 21 H 1.07998 * 119.99992 * 5.05784 * 20 19 18 22 22 C 1.38657 * 120.00336 * 185.05819 * 20 19 18 23 23 N 1.31563 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00234 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47279 * 60.00220 * 24 22 20 26 26 H 1.48506 * 109.47141 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47437 * 299.99925 * 24 22 20 28 28 C 1.38073 * 119.97000 * 270.02959 * 14 13 11 29 29 H 1.09000 * 109.46528 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47131 * 300.00223 * 1 2 3 31 31 H 1.08996 * 109.46812 * 60.00019 * 1 2 3 32 32 H 1.09001 * 109.47014 * 240.00174 * 2 1 3 33 33 H 1.08996 * 109.47152 * 119.99556 * 2 1 3 34 34 H 0.96991 * 117.70905 * 184.34454 * 7 5 3 35 35 H 1.08997 * 109.21854 * 98.43406 * 8 7 5 36 36 H 1.09004 * 109.21155 * 217.76185 * 8 7 5 37 37 H 1.08998 * 109.84905 * 287.31340 * 9 8 7 38 38 H 1.08998 * 109.84106 * 166.50723 * 9 8 7 39 39 H 1.09004 * 109.47186 * 60.00424 * 13 11 10 40 40 H 1.08997 * 109.47513 * 300.00303 * 13 11 10 41 41 H 1.08000 * 119.93154 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.95959 * 179.72701 * 16 15 14 43 43 H 1.08000 * 120.03367 * 179.97438 * 17 16 15 44 44 H 0.96997 * 119.99776 * 179.97438 * 23 22 20 45 45 H 1.08003 * 120.03362 * 359.95128 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6113 1.9831 0.8438 5 6 3.5404 1.4466 0.1090 6 8 4.0438 1.1610 1.1748 7 7 4.3426 1.7501 -0.9126 8 6 3.8830 2.1983 -2.2199 9 6 2.4294 1.7692 -2.4614 10 7 1.6521 2.1020 -1.2558 11 6 0.6233 2.9715 -1.3026 12 8 -0.0038 3.2236 -0.2956 13 6 0.2523 3.6303 -2.6061 14 6 -0.9221 4.5492 -2.3882 15 6 -0.7097 5.8726 -2.0459 16 6 -1.7847 6.7187 -1.8446 17 6 -3.0743 6.2445 -1.9843 18 6 -3.2909 4.9164 -2.3267 19 8 -4.5572 4.4474 -2.4652 20 6 -5.5603 5.2895 -2.1448 21 1 -5.3414 6.3120 -1.8747 22 6 -6.8728 4.8428 -2.1621 23 7 -7.1395 3.5974 -2.4916 24 14 -8.2624 6.0093 -1.7175 25 1 -8.2626 7.1596 -2.6566 26 1 -9.5596 5.2926 -1.8116 27 1 -8.0697 6.5029 -0.3302 28 6 -2.2090 4.0693 -2.5297 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.2991 1.6661 -0.7753 35 1 3.9517 3.2849 -2.2713 36 1 4.5172 1.7625 -2.9919 37 1 2.3858 0.6953 -2.6424 38 1 2.0236 2.3042 -3.3200 39 1 -0.0152 2.8664 -3.3361 40 1 1.1005 4.2058 -2.9767 41 1 0.2978 6.2457 -1.9357 42 1 -1.6156 7.7504 -1.5732 43 1 -3.9135 6.9058 -1.8265 44 1 -8.0576 3.2848 -2.5033 45 1 -2.3742 3.0360 -2.7972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089801262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:49 Heat of formation + Delta-G solvation = -94.461379 kcal Electronic energy + Delta-G solvation = -28506.317868 eV Core-core repulsion = 24488.505370 eV Total energy + Delta-G solvation = -4017.812497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03992 -40.86457 -40.11952 -38.26918 -37.57563 -35.95350 -34.38509 -34.13720 -33.08630 -30.87813 -30.39018 -29.14440 -27.67547 -27.09188 -24.87074 -23.43182 -23.20411 -22.81644 -21.32324 -19.66604 -19.38138 -18.77115 -18.69395 -18.13910 -17.45249 -16.98119 -16.75462 -16.47794 -16.25563 -16.07535 -15.91814 -15.48680 -15.37125 -15.06121 -15.03193 -14.75746 -14.30406 -13.97846 -13.86760 -13.59865 -13.53257 -13.27092 -13.10196 -12.94234 -12.79350 -12.64235 -12.48823 -12.38633 -12.33172 -12.20085 -12.11956 -12.04084 -11.39095 -11.19531 -10.89077 -10.76757 -10.17527 -9.74357 -9.61305 -8.95694 -8.46438 -6.14626 0.52808 0.77953 1.33703 1.37702 1.44797 1.50029 1.60447 1.75629 2.17714 2.18765 2.84202 3.15610 3.35478 3.45909 3.65349 3.79223 3.86602 3.92272 3.98993 4.12444 4.19732 4.27351 4.33866 4.43437 4.45119 4.48315 4.58880 4.63120 4.68557 4.76046 4.77145 4.91166 4.96841 5.00705 5.08171 5.13790 5.26290 5.28459 5.33010 5.66899 5.74564 5.76519 5.77183 6.03769 6.13962 6.22448 6.32988 6.98376 7.03437 7.16217 7.80159 8.76888 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002643 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.654866 B =10589.843500 C =11268.332818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.132 3.868 4 H 0.093 0.907 5 C 0.521 3.479 6 O -0.592 6.592 7 N -0.704 5.704 8 C 0.091 3.909 9 C 0.076 3.924 10 N -0.611 5.611 11 C 0.520 3.480 12 O -0.569 6.569 13 C -0.087 4.087 14 C -0.026 4.026 15 C -0.179 4.179 16 C -0.076 4.076 17 C -0.248 4.248 18 C 0.111 3.889 19 O -0.234 6.234 20 C -0.414 4.414 21 H 0.099 0.901 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.017 2.983 25 H -0.255 1.255 26 H -0.270 1.270 27 H -0.261 1.261 28 C -0.189 4.189 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.272 0.728 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.492 -3.278 -5.330 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.025 3.975 4 H 0.111 0.889 5 C 0.307 3.693 6 O -0.472 6.472 7 N -0.354 5.354 8 C -0.033 4.033 9 C -0.045 4.045 10 N -0.348 5.348 11 C 0.310 3.690 12 O -0.447 6.447 13 C -0.126 4.126 14 C -0.026 4.026 15 C -0.198 4.198 16 C -0.094 4.094 17 C -0.267 4.267 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.116 0.884 22 C -0.220 4.220 23 N -0.560 5.560 24 Si 0.836 3.164 25 H -0.179 1.179 26 H -0.194 1.194 27 H -0.186 1.186 28 C -0.208 4.208 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 24.920 -3.591 -4.426 25.564 hybrid contribution -0.955 0.313 0.660 1.202 sum 23.965 -3.278 -3.766 24.480 Atomic orbital electron populations 1.21630 0.95078 1.02050 1.01149 1.21685 0.96286 0.92929 1.04179 1.21202 0.90179 0.96580 0.89561 0.88890 1.20194 0.89687 0.75833 0.83629 1.90771 1.76113 1.51504 1.28831 1.45351 1.10648 1.66412 1.13037 1.22214 0.95815 1.01584 0.83682 1.22723 0.90056 1.04175 0.87516 1.48349 1.33019 1.43604 1.09782 1.21067 0.78597 0.78109 0.91196 1.90783 1.52389 1.63146 1.38359 1.20766 0.97744 0.99336 0.94732 1.19190 0.92104 0.94513 0.96832 1.20970 0.99298 0.93283 1.06213 1.21118 0.91144 1.00405 0.96703 1.21291 0.98902 0.95429 1.11114 1.19891 0.85924 0.93619 0.94449 1.83929 1.11516 1.41959 1.76690 1.21759 0.84983 0.94196 1.48099 0.88393 1.26571 1.00170 0.98852 0.96435 1.70178 1.21222 1.17351 1.47221 0.84674 0.75295 0.76977 0.79431 1.17875 1.19449 1.18578 1.20221 0.91173 0.98656 1.10767 0.90897 0.94598 0.93736 0.88825 0.90311 0.75458 0.89745 0.84833 0.88273 0.84200 0.85287 0.83190 0.83516 0.83994 0.86711 0.91870 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.67 71.98 0.70 -2.65 16 2 C -0.11 -2.14 5.50 30.60 0.17 -1.97 16 3 C 0.13 2.86 2.46 44.06 0.11 2.97 16 4 H 0.09 2.74 7.23 -2.39 -0.02 2.72 16 5 C 0.52 10.64 7.10 87.79 0.62 11.27 16 6 O -0.59 -17.29 17.80 -3.04 -0.05 -17.34 16 7 N -0.70 -7.44 5.42 -466.27 -2.53 -9.97 16 8 C 0.09 0.21 7.35 86.70 0.64 0.85 16 9 C 0.08 0.39 6.34 86.39 0.55 0.94 16 10 N -0.61 -10.36 2.25 -798.33 -1.80 -12.16 16 11 C 0.52 12.84 6.76 87.65 0.59 13.44 16 12 O -0.57 -21.22 15.59 -3.03 -0.05 -21.27 16 13 C -0.09 -1.68 4.20 29.10 0.12 -1.56 16 14 C -0.03 -0.84 4.37 -19.88 -0.09 -0.92 16 15 C -0.18 -5.60 9.70 22.30 0.22 -5.38 16 16 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16 17 C -0.25 -11.34 9.17 22.39 0.21 -11.14 16 18 C 0.11 5.75 6.65 22.58 0.15 5.90 16 19 O -0.23 -14.57 9.76 -22.76 -0.22 -14.79 16 20 C -0.41 -24.98 9.49 67.92 0.64 -24.33 16 21 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 22 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 23 N -0.92 -57.82 13.67 21.62 0.30 -57.52 16 24 Si 1.02 44.12 29.55 68.60 2.03 46.14 16 25 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 28 C -0.19 -8.18 9.64 22.39 0.22 -7.97 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.15 7.06 -2.39 -0.02 1.13 16 32 H 0.09 1.28 7.33 -2.39 -0.02 1.26 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 3.33 8.80 -92.71 -0.82 2.52 16 35 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.13 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.10 0.29 7.38 -2.39 -0.02 0.27 16 38 H 0.14 -0.05 6.03 -2.39 -0.01 -0.07 16 39 H 0.13 1.86 7.76 -2.38 -0.02 1.84 16 40 H 0.15 1.43 7.83 -2.39 -0.02 1.41 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -92.24 372.76 3.42 -88.82 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.21 Total: 22.02 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.53 Total: -23.93 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -4.03 Total: -79.65 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.32 Total: -53.40 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -92.24 3.42 -88.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089801262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.639 kcal (2) G-P(sol) polarization free energy of solvation -92.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds