Wall clock time and date at job start Tue Mar 31 2020 16:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47175 * 120.00335 * 2 1 3 5 5 H 1.09004 * 109.47249 * 56.83809 * 4 2 1 6 6 N 1.46494 * 109.47426 * 296.83914 * 4 2 1 7 7 C 1.34778 * 120.00536 * 154.99893 * 6 4 2 8 8 O 1.21718 * 119.99715 * 359.97438 * 7 6 4 9 9 C 1.46251 * 120.00344 * 180.02562 * 7 6 4 10 10 C 1.35023 * 120.00367 * 180.02562 * 9 7 6 11 11 C 1.46958 * 120.00221 * 179.97438 * 10 9 7 12 12 C 1.40023 * 120.09787 * 179.97438 * 11 10 9 13 13 C 1.37603 * 119.89406 * 179.97438 * 12 11 10 14 14 C 1.39171 * 120.10189 * 0.27224 * 13 12 11 15 15 O 1.35576 * 119.89896 * 179.69962 * 14 13 12 16 16 C 1.34781 * 116.99591 * 356.96824 * 15 14 13 17 17 H 1.07998 * 120.00114 * 5.02729 * 16 15 14 18 18 C 1.38720 * 119.99373 * 185.03131 * 16 15 14 19 19 N 1.31508 * 120.00250 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47242 * 89.99913 * 20 18 16 22 22 H 1.48498 * 109.46873 * 210.00215 * 20 18 16 23 23 H 1.48503 * 109.47007 * 330.00048 * 20 18 16 24 24 C 1.39182 * 120.20156 * 359.44977 * 14 13 12 25 25 C 1.37591 * 120.09973 * 0.55031 * 24 14 13 26 26 C 1.50702 * 109.47315 * 176.83595 * 4 2 1 27 27 N 1.34778 * 119.99663 * 276.33818 * 26 4 2 28 28 O 1.21275 * 119.99707 * 96.33679 * 26 4 2 29 29 H 1.09008 * 109.46676 * 305.10682 * 1 2 3 30 30 H 1.09003 * 109.46820 * 65.09852 * 1 2 3 31 31 H 1.08994 * 109.47451 * 185.10508 * 1 2 3 32 32 H 1.09003 * 109.46481 * 240.00583 * 2 1 3 33 33 H 1.09003 * 109.47032 * 60.00920 * 3 2 1 34 34 H 1.09006 * 109.46790 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47714 * 300.00457 * 3 2 1 36 36 H 0.97008 * 119.99658 * 335.00226 * 6 4 2 37 37 H 1.08002 * 120.00041 * 359.97438 * 9 7 6 38 38 H 1.08002 * 119.99591 * 359.97438 * 10 9 7 39 39 H 1.07997 * 120.05411 * 359.95389 * 12 11 10 40 40 H 1.07999 * 119.94617 * 179.97438 * 13 12 11 41 41 H 0.96998 * 119.99633 * 180.02562 * 19 18 16 42 42 H 1.08002 * 119.94612 * 180.27401 * 24 14 13 43 43 H 1.08004 * 120.04678 * 179.74719 * 25 24 14 44 44 H 0.96994 * 120.00474 * 5.02159 * 27 26 4 45 45 H 0.97002 * 119.99516 * 185.02707 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6312 -1.7313 1.2779 6 7 1.6150 0.0117 2.4441 7 6 1.4869 -0.6334 3.6206 8 8 1.7241 -1.8252 3.6900 9 6 1.0620 0.0984 4.8134 10 6 0.9343 -0.5478 5.9921 11 6 0.5078 0.1876 7.1908 12 6 0.3742 -0.4806 8.4141 13 6 -0.0249 0.2123 9.5340 14 6 -0.3010 1.5738 9.4509 15 8 -0.6998 2.2511 10.5556 16 6 -0.8687 1.5347 11.6847 17 1 -0.6100 0.4863 11.7029 18 6 -1.3750 2.1441 12.8234 19 7 -1.6896 3.4208 12.8013 20 14 -1.6099 1.1512 14.3882 21 1 -0.3718 1.2154 15.2057 22 1 -2.7452 1.7115 15.1642 23 1 -1.8993 -0.2627 14.0384 24 6 -0.1640 2.2433 8.2384 25 6 0.2345 1.5587 7.1134 26 6 3.5450 -0.7896 1.2106 27 7 4.1575 -1.7715 0.5198 28 8 4.2049 0.0391 1.8011 29 1 -0.3633 0.5911 0.8408 30 1 -0.3633 0.4327 -0.9322 31 1 -0.3634 -1.0235 0.0914 32 1 1.8933 -0.5138 -0.8901 33 1 1.6768 1.9563 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8898 36 1 1.4255 0.9615 2.3887 37 1 0.8512 1.1558 4.7518 38 1 1.1455 -1.6051 6.0539 39 1 0.5836 -1.5381 8.4784 40 1 -0.1287 -0.3024 10.4778 41 1 -2.0432 3.8470 13.5977 42 1 -0.3750 3.3008 8.1797 43 1 0.3366 2.0782 6.1721 44 1 3.6330 -2.3906 -0.0116 45 1 5.1230 -1.8592 0.5543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107186227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:32 Heat of formation + Delta-G solvation = -72.662665 kcal Electronic energy + Delta-G solvation = -26972.355767 eV Core-core repulsion = 22955.488533 eV Total energy + Delta-G solvation = -4016.867234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.68864 -39.23027 -38.80227 -36.94726 -36.57280 -33.93190 -33.22032 -33.02932 -32.26494 -30.41244 -28.70097 -27.62720 -27.35297 -25.64312 -23.38287 -22.17025 -21.80740 -21.01444 -19.97479 -19.38702 -18.21123 -17.90776 -17.28556 -17.07350 -17.00532 -15.77526 -15.38756 -14.92528 -14.79245 -14.72120 -14.57033 -14.30434 -14.04699 -13.94699 -13.79757 -13.45275 -13.37020 -13.02602 -12.78649 -12.58077 -12.50949 -11.92347 -11.75894 -11.70709 -11.66935 -11.37953 -11.34013 -11.12120 -11.04867 -10.66948 -10.52984 -10.43197 -9.94909 -9.84841 -9.59246 -9.47788 -9.14896 -8.84153 -8.36262 -7.09588 -6.64255 -4.18967 1.08253 2.15603 2.33416 2.55695 2.96555 3.04849 3.05673 3.10315 3.35593 3.65328 3.83079 4.22821 4.39281 4.44553 4.52919 4.75206 4.94201 4.94787 5.03683 5.05444 5.16847 5.25222 5.29508 5.43249 5.45459 5.55018 5.57573 5.65282 5.69071 5.83834 5.85576 6.03083 6.13673 6.21915 6.46253 6.49102 6.51059 6.62825 6.81062 6.93257 7.02259 7.14840 7.25359 7.29670 7.49788 7.65821 7.81293 7.99373 8.29984 8.80599 9.47802 10.52409 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027584 B = 0.001845 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.824627 B =15176.113240 C =15556.279155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.154 4.154 4 C 0.134 3.866 5 H 0.109 0.891 6 N -0.709 5.709 7 C 0.561 3.439 8 O -0.560 6.560 9 C -0.280 4.280 10 C 0.040 3.960 11 C -0.199 4.199 12 C -0.034 4.034 13 C -0.243 4.243 14 C 0.167 3.833 15 O -0.162 6.162 16 C -0.393 4.393 17 H 0.097 0.903 18 C 0.041 3.959 19 N -0.852 5.852 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.200 4.200 25 C -0.042 4.042 26 C 0.508 3.492 27 N -0.855 5.855 28 O -0.530 6.530 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.405 0.595 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.274 0.726 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.400 0.600 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.767 -7.742 -24.957 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.212 4.212 4 C 0.024 3.976 5 H 0.127 0.873 6 N -0.362 5.362 7 C 0.354 3.646 8 O -0.440 6.440 9 C -0.301 4.301 10 C 0.020 3.980 11 C -0.200 4.200 12 C -0.053 4.053 13 C -0.262 4.262 14 C 0.111 3.889 15 O -0.063 6.063 16 C -0.469 4.469 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.485 5.485 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.219 4.219 25 C -0.060 4.060 26 C 0.291 3.709 27 N -0.420 5.420 28 O -0.405 6.405 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.242 0.758 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.228 0.772 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.016 -7.491 -24.207 25.831 hybrid contribution 0.066 -0.422 0.503 0.660 sum 5.082 -7.914 -23.704 25.501 Atomic orbital electron populations 1.21841 0.93414 1.02636 1.02529 1.21338 0.97326 0.97241 0.95597 1.21909 1.01917 0.95014 1.02345 1.20845 0.90626 0.99067 0.87079 0.87282 1.45581 1.69811 1.13082 1.07703 1.18453 0.75957 0.86857 0.83360 1.90760 1.52005 1.15620 1.85635 1.22360 1.14513 1.00593 0.92682 1.22273 0.86250 0.98672 0.90786 1.18454 1.14292 0.94019 0.93226 1.20985 0.94397 0.98389 0.91510 1.21098 1.10675 0.94730 0.99706 1.19619 0.91037 0.90576 0.87710 1.83910 1.71065 1.35880 1.15435 1.21476 1.44172 0.94997 0.86213 0.88527 1.25399 0.95699 0.96288 0.99112 1.70014 1.38486 1.09928 1.30033 0.85646 0.78562 0.79218 0.79691 1.19635 1.20057 1.18952 1.20144 1.10678 1.00257 0.90810 1.20883 0.95199 0.92982 0.96965 1.21197 0.91315 0.80578 0.77777 1.43847 1.11749 1.34114 1.52246 1.90750 1.66915 1.39240 1.43624 0.91880 0.91943 0.92157 0.89481 0.92126 0.91904 0.91804 0.75814 0.85806 0.85966 0.86830 0.85108 0.91604 0.86120 0.86381 0.77162 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.00 37.16 0.33 -0.46 16 2 C -0.10 -0.56 2.74 -90.62 -0.25 -0.81 16 3 C -0.15 -1.01 8.75 37.16 0.33 -0.69 16 4 C 0.13 1.20 2.08 -69.09 -0.14 1.06 16 5 H 0.11 0.98 7.58 -51.93 -0.39 0.58 16 6 N -0.71 -7.75 4.06 -56.38 -0.23 -7.98 16 7 C 0.56 8.12 7.69 -13.04 -0.10 8.02 16 8 O -0.56 -9.71 15.89 5.17 0.08 -9.63 16 9 C -0.28 -4.01 9.41 -37.51 -0.35 -4.36 16 10 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 11 C -0.20 -3.47 5.87 -105.03 -0.62 -4.08 16 12 C -0.03 -0.62 9.78 -39.14 -0.38 -1.01 16 13 C -0.24 -5.09 9.15 -39.47 -0.36 -5.45 16 14 C 0.17 3.88 6.66 -38.88 -0.26 3.62 16 15 O -0.16 -4.43 9.74 0.72 0.01 -4.42 16 16 C -0.39 -10.51 9.48 30.91 0.29 -10.21 16 17 H 0.10 2.37 5.17 -52.49 -0.27 2.10 16 18 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 19 N -0.85 -23.95 13.67 55.48 0.76 -23.19 16 20 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 25 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 26 C 0.51 5.42 6.36 -10.98 -0.07 5.35 16 27 N -0.86 -5.63 8.87 31.22 0.28 -5.36 16 28 O -0.53 -7.95 16.93 5.56 0.09 -7.86 16 29 H 0.06 0.39 7.83 -51.92 -0.41 -0.02 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.41 6.36 -51.93 -0.33 0.08 16 34 H 0.06 0.52 6.96 -51.93 -0.36 0.16 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.41 3.73 6.64 -40.82 -0.27 3.46 16 37 H 0.12 1.53 6.07 -52.49 -0.32 1.22 16 38 H 0.12 1.90 7.52 -52.49 -0.39 1.50 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.13 2.71 5.60 -52.49 -0.29 2.41 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 42 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.12 1.69 6.16 -52.48 -0.32 1.37 16 44 H 0.40 1.34 8.83 -40.82 -0.36 0.98 16 45 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -34.40 381.98 -6.83 -41.23 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.76 Total: 10.15 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.79 Total: -13.31 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.81 Total: -36.53 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.18 Total: -21.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.40 -6.83 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107186227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.430 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds