Wall clock time and date at job start Tue Mar 31 2020 16:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47175 * 120.00335 * 2 1 3 5 5 H 1.09004 * 109.47249 * 56.83809 * 4 2 1 6 6 N 1.46494 * 109.47426 * 296.83914 * 4 2 1 7 7 C 1.34778 * 120.00536 * 154.99893 * 6 4 2 8 8 O 1.21718 * 119.99715 * 359.97438 * 7 6 4 9 9 C 1.46251 * 120.00344 * 180.02562 * 7 6 4 10 10 C 1.35023 * 120.00367 * 180.02562 * 9 7 6 11 11 C 1.46958 * 120.00221 * 179.97438 * 10 9 7 12 12 C 1.40023 * 120.09787 * 179.97438 * 11 10 9 13 13 C 1.37603 * 119.89406 * 179.97438 * 12 11 10 14 14 C 1.39171 * 120.10189 * 0.27224 * 13 12 11 15 15 O 1.35576 * 119.89896 * 179.69962 * 14 13 12 16 16 C 1.34781 * 116.99591 * 356.96824 * 15 14 13 17 17 H 1.07998 * 120.00114 * 5.02729 * 16 15 14 18 18 C 1.38720 * 119.99373 * 185.03131 * 16 15 14 19 19 N 1.31508 * 120.00250 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47242 * 89.99913 * 20 18 16 22 22 H 1.48498 * 109.46873 * 210.00215 * 20 18 16 23 23 H 1.48503 * 109.47007 * 330.00048 * 20 18 16 24 24 C 1.39182 * 120.20156 * 359.44977 * 14 13 12 25 25 C 1.37591 * 120.09973 * 0.55031 * 24 14 13 26 26 C 1.50702 * 109.47315 * 176.83595 * 4 2 1 27 27 N 1.34778 * 119.99663 * 276.33818 * 26 4 2 28 28 O 1.21275 * 119.99707 * 96.33679 * 26 4 2 29 29 H 1.09008 * 109.46676 * 305.10682 * 1 2 3 30 30 H 1.09003 * 109.46820 * 65.09852 * 1 2 3 31 31 H 1.08994 * 109.47451 * 185.10508 * 1 2 3 32 32 H 1.09003 * 109.46481 * 240.00583 * 2 1 3 33 33 H 1.09003 * 109.47032 * 60.00920 * 3 2 1 34 34 H 1.09006 * 109.46790 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47714 * 300.00457 * 3 2 1 36 36 H 0.97008 * 119.99658 * 335.00226 * 6 4 2 37 37 H 1.08002 * 120.00041 * 359.97438 * 9 7 6 38 38 H 1.08002 * 119.99591 * 359.97438 * 10 9 7 39 39 H 1.07997 * 120.05411 * 359.95389 * 12 11 10 40 40 H 1.07999 * 119.94617 * 179.97438 * 13 12 11 41 41 H 0.96998 * 119.99633 * 180.02562 * 19 18 16 42 42 H 1.08002 * 119.94612 * 180.27401 * 24 14 13 43 43 H 1.08004 * 120.04678 * 179.74719 * 25 24 14 44 44 H 0.96994 * 120.00474 * 5.02159 * 27 26 4 45 45 H 0.97002 * 119.99516 * 185.02707 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6312 -1.7313 1.2779 6 7 1.6150 0.0117 2.4441 7 6 1.4869 -0.6334 3.6206 8 8 1.7241 -1.8252 3.6900 9 6 1.0620 0.0984 4.8134 10 6 0.9343 -0.5478 5.9921 11 6 0.5078 0.1876 7.1908 12 6 0.3742 -0.4806 8.4141 13 6 -0.0249 0.2123 9.5340 14 6 -0.3010 1.5738 9.4509 15 8 -0.6998 2.2511 10.5556 16 6 -0.8687 1.5347 11.6847 17 1 -0.6100 0.4863 11.7029 18 6 -1.3750 2.1441 12.8234 19 7 -1.6896 3.4208 12.8013 20 14 -1.6099 1.1512 14.3882 21 1 -0.3718 1.2154 15.2057 22 1 -2.7452 1.7115 15.1642 23 1 -1.8993 -0.2627 14.0384 24 6 -0.1640 2.2433 8.2384 25 6 0.2345 1.5587 7.1134 26 6 3.5450 -0.7896 1.2106 27 7 4.1575 -1.7715 0.5198 28 8 4.2049 0.0391 1.8011 29 1 -0.3633 0.5911 0.8408 30 1 -0.3633 0.4327 -0.9322 31 1 -0.3634 -1.0235 0.0914 32 1 1.8933 -0.5138 -0.8901 33 1 1.6768 1.9563 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8898 36 1 1.4255 0.9615 2.3887 37 1 0.8512 1.1558 4.7518 38 1 1.1455 -1.6051 6.0539 39 1 0.5836 -1.5381 8.4784 40 1 -0.1287 -0.3024 10.4778 41 1 -2.0432 3.8470 13.5977 42 1 -0.3750 3.3008 8.1797 43 1 0.3366 2.0782 6.1721 44 1 3.6330 -2.3906 -0.0116 45 1 5.1230 -1.8592 0.5543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107186227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:31 Heat of formation + Delta-G solvation = -98.077947 kcal Electronic energy + Delta-G solvation = -26973.457856 eV Core-core repulsion = 22955.488533 eV Total energy + Delta-G solvation = -4017.969324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.58344 -40.84590 -39.91582 -38.50349 -37.39300 -34.75795 -34.68258 -34.07799 -33.81429 -31.97333 -29.99158 -28.37665 -28.07792 -27.44770 -24.71931 -23.71815 -22.55879 -22.23263 -20.85979 -20.60563 -19.78526 -18.89621 -18.59160 -18.43690 -17.82264 -16.74464 -16.55520 -16.38668 -16.01832 -15.90928 -15.68542 -15.60764 -15.30462 -15.22393 -14.85132 -14.73751 -14.60854 -14.11920 -14.05704 -13.60613 -13.39599 -13.30955 -13.16899 -12.95667 -12.71036 -12.58562 -12.23887 -12.21806 -12.12902 -11.87837 -11.83772 -11.33663 -11.22008 -11.11713 -11.04845 -10.66073 -10.58529 -10.07140 -9.89759 -8.68816 -8.52571 -6.18557 -0.26305 0.58169 1.11225 1.35682 1.45544 1.52888 1.54015 2.09272 2.15191 2.33060 2.71298 2.86575 3.17916 3.41155 3.63139 3.77976 3.86600 3.91374 3.94015 4.08185 4.18242 4.28885 4.34087 4.45862 4.50285 4.56625 4.65665 4.81590 4.93798 4.94857 4.99184 5.02224 5.13785 5.19122 5.24592 5.31465 5.36315 5.36535 5.43144 5.57713 5.63154 5.80532 5.87122 5.97080 6.09906 6.41157 6.50864 6.91781 7.19839 7.31087 7.68786 8.69559 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027584 B = 0.001845 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.824627 B =15176.113240 C =15556.279155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.154 4.154 4 C 0.130 3.870 5 H 0.114 0.886 6 N -0.695 5.695 7 C 0.554 3.446 8 O -0.589 6.589 9 C -0.249 4.249 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.039 4.039 13 C -0.249 4.249 14 C 0.130 3.870 15 O -0.219 6.219 16 C -0.417 4.417 17 H 0.106 0.894 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.207 4.207 25 C -0.038 4.038 26 C 0.502 3.498 27 N -0.836 5.836 28 O -0.581 6.581 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.149 0.851 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.275 0.725 42 H 0.123 0.877 43 H 0.158 0.842 44 H 0.418 0.582 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -9.733 -28.556 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.212 4.212 4 C 0.021 3.979 5 H 0.132 0.868 6 N -0.347 5.347 7 C 0.346 3.654 8 O -0.472 6.472 9 C -0.269 4.269 10 C -0.001 4.001 11 C -0.173 4.173 12 C -0.057 4.057 13 C -0.268 4.268 14 C 0.078 3.922 15 O -0.124 6.124 16 C -0.493 4.493 17 H 0.123 0.877 18 C -0.218 4.218 19 N -0.550 5.550 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.226 4.226 25 C -0.055 4.055 26 C 0.286 3.714 27 N -0.401 5.401 28 O -0.460 6.460 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.166 0.834 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.175 0.825 44 H 0.249 0.751 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.537 -9.537 -27.929 30.027 hybrid contribution 0.122 0.014 0.937 0.945 sum 5.659 -9.523 -26.991 29.176 Atomic orbital electron populations 1.21841 0.92700 1.02720 1.03044 1.21360 0.97691 0.96674 0.94789 1.21908 1.00645 0.95614 1.03020 1.21102 0.89773 0.99565 0.87446 0.86841 1.45525 1.68110 1.13647 1.07454 1.18536 0.76032 0.86545 0.84306 1.90756 1.53315 1.16896 1.86199 1.22724 1.10468 1.01618 0.92135 1.22169 0.88477 0.98988 0.90455 1.18774 1.10868 0.94040 0.93602 1.21315 0.93668 0.99916 0.90781 1.21205 1.10869 0.94116 1.00660 1.20185 0.92058 0.91933 0.88000 1.83891 1.74713 1.37184 1.16578 1.21905 1.44896 0.95612 0.86860 0.87668 1.26629 0.95221 0.97428 1.02524 1.70149 1.41642 1.12035 1.31180 0.84578 0.78690 0.77966 0.74961 1.18810 1.19526 1.17552 1.20407 1.10698 1.00725 0.90811 1.21274 0.93723 0.93090 0.97461 1.21497 0.91903 0.80562 0.77483 1.43711 1.12317 1.33050 1.50998 1.90731 1.67918 1.41300 1.46091 0.92688 0.90424 0.92044 0.87052 0.92534 0.93829 0.90108 0.74682 0.83369 0.85580 0.83721 0.85648 0.91580 0.85923 0.82459 0.75081 0.76254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.00 71.98 0.65 -0.41 16 2 C -0.09 -0.72 2.74 -10.79 -0.03 -0.75 16 3 C -0.15 -1.60 8.75 71.98 0.63 -0.97 16 4 C 0.13 1.97 2.08 44.25 0.09 2.06 16 5 H 0.11 1.68 7.58 -2.38 -0.02 1.66 16 6 N -0.70 -13.14 4.06 -450.50 -1.83 -14.97 16 7 C 0.55 14.31 7.69 86.32 0.66 14.98 16 8 O -0.59 -18.92 15.89 -4.41 -0.07 -18.99 16 9 C -0.25 -6.13 9.41 23.61 0.22 -5.91 16 10 C 0.02 0.53 9.45 23.82 0.23 0.75 16 11 C -0.17 -5.53 5.87 -20.13 -0.12 -5.65 16 12 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 13 C -0.25 -10.60 9.15 22.34 0.20 -10.40 16 14 C 0.13 6.30 6.66 22.72 0.15 6.45 16 15 O -0.22 -12.78 9.74 -20.34 -0.20 -12.97 16 16 C -0.42 -23.62 9.48 67.94 0.64 -22.98 16 17 H 0.11 5.44 5.17 -2.91 -0.02 5.43 16 18 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 19 N -0.91 -54.66 13.67 21.62 0.30 -54.36 16 20 Si 1.02 41.75 29.55 68.60 2.03 43.77 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 C -0.21 -8.44 9.97 22.34 0.22 -8.22 16 25 C -0.04 -1.22 9.40 22.55 0.21 -1.01 16 26 C 0.50 9.61 6.36 87.66 0.56 10.16 16 27 N -0.84 -8.91 8.87 -173.53 -1.54 -10.45 16 28 O -0.58 -16.66 16.93 -3.01 -0.05 -16.71 16 29 H 0.05 0.50 7.83 -2.38 -0.02 0.48 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.61 6.36 -2.39 -0.02 0.60 16 34 H 0.04 0.64 6.96 -2.38 -0.02 0.62 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.41 6.29 6.64 -92.70 -0.62 5.67 16 37 H 0.15 2.91 6.07 -2.91 -0.02 2.89 16 38 H 0.13 3.53 7.52 -2.91 -0.02 3.50 16 39 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.13 5.37 5.60 -2.91 -0.02 5.35 16 41 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.16 3.80 6.16 -2.91 -0.02 3.78 16 44 H 0.42 1.48 8.83 -92.71 -0.82 0.66 16 45 H 0.41 3.91 8.93 -92.71 -0.83 3.08 16 Total: -1.00 -80.55 381.98 2.45 -78.09 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -1.19 Total: 30.20 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 5.01 Total: -23.61 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.07 Total: -79.78 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -0.32 Total: -48.67 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -80.55 2.45 -78.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107186227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.985 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds