Wall clock time and date at job start Tue Mar 31 2020 16:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47239 * 2 1 4 4 C 1.52995 * 109.47164 * 120.00703 * 2 1 3 5 5 H 1.09005 * 109.46577 * 295.60876 * 4 2 1 6 6 N 1.46498 * 109.47663 * 55.60793 * 4 2 1 7 7 C 1.34774 * 119.99951 * 275.00450 * 6 4 2 8 8 O 1.21717 * 120.00511 * 359.97438 * 7 6 4 9 9 C 1.46257 * 119.99792 * 179.97438 * 7 6 4 10 10 C 1.35025 * 120.00285 * 179.97438 * 9 7 6 11 11 C 1.46959 * 120.00251 * 180.02562 * 10 9 7 12 12 C 1.40021 * 120.09993 * 179.97438 * 11 10 9 13 13 C 1.37601 * 119.89913 * 179.97438 * 12 11 10 14 14 C 1.39170 * 120.09720 * 0.25816 * 13 12 11 15 15 O 1.35572 * 119.89872 * 179.74049 * 14 13 12 16 16 C 1.34784 * 117.00038 * 354.23652 * 15 14 13 17 17 H 1.08002 * 119.99924 * 5.06905 * 16 15 14 18 18 C 1.38718 * 120.00317 * 185.08103 * 16 15 14 19 19 N 1.31506 * 120.00151 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99674 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46831 * 90.00650 * 20 18 16 22 22 H 1.48507 * 109.46925 * 210.00300 * 20 18 16 23 23 H 1.48494 * 109.47539 * 330.00183 * 20 18 16 24 24 C 1.39175 * 120.20409 * 359.48630 * 14 13 12 25 25 C 1.37597 * 120.10404 * 0.51100 * 24 14 13 26 26 C 1.50693 * 109.47158 * 175.61539 * 4 2 1 27 27 N 1.34775 * 120.00650 * 85.54666 * 26 4 2 28 28 O 1.21288 * 119.99675 * 265.54554 * 26 4 2 29 29 H 1.09006 * 109.47066 * 299.99879 * 1 2 3 30 30 H 1.09001 * 109.47053 * 59.99656 * 1 2 3 31 31 H 1.08998 * 109.47598 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46629 * 239.99960 * 2 1 3 33 33 H 1.08997 * 109.47058 * 185.14956 * 3 2 1 34 34 H 1.08995 * 109.47177 * 305.15236 * 3 2 1 35 35 H 1.09004 * 109.46541 * 65.14988 * 3 2 1 36 36 H 0.96998 * 119.99858 * 94.99864 * 6 4 2 37 37 H 1.08002 * 120.00482 * 0.02562 * 9 7 6 38 38 H 1.08006 * 119.99699 * 0.02562 * 10 9 7 39 39 H 1.08007 * 120.05543 * 359.95602 * 12 11 10 40 40 H 1.08003 * 119.94750 * 179.97438 * 13 12 11 41 41 H 0.97000 * 120.00354 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.94864 * 180.25801 * 24 14 13 43 43 H 1.08003 * 120.05639 * 179.76400 * 25 24 14 44 44 H 0.97006 * 119.99468 * 5.05713 * 27 26 4 45 45 H 0.96998 * 120.00442 * 185.05929 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.7423 -0.1641 2.1374 6 7 1.4673 -2.0687 1.3031 7 6 0.2492 -2.2618 1.8465 8 8 -0.3749 -1.3170 2.2929 9 6 -0.3228 -3.6069 1.8999 10 6 -1.5429 -3.8006 2.4448 11 6 -2.1174 -5.1521 2.4990 12 6 -3.3823 -5.3554 3.0641 13 6 -3.9164 -6.6226 3.1121 14 6 -3.1991 -7.7020 2.6051 15 8 -3.7270 -8.9496 2.6593 16 6 -4.8923 -9.0927 3.3214 17 1 -5.4039 -8.2237 3.7081 18 6 -5.4343 -10.3561 3.5064 19 7 -6.5710 -10.4958 4.1529 20 14 -4.5496 -11.8591 2.8372 21 1 -3.6144 -12.3815 3.8656 22 1 -5.5443 -12.9072 2.4945 23 1 -3.7870 -11.4834 1.6197 24 6 -1.9438 -7.5040 2.0377 25 6 -1.4017 -6.2404 1.9852 26 6 3.5430 -0.8161 1.1960 27 7 4.2991 0.2043 1.6472 28 8 4.0724 -1.8108 0.7472 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1261 1.4438 -0.0922 34 1 1.6034 1.9822 -0.8402 35 1 1.7539 1.9289 0.9326 36 1 1.9648 -2.8217 0.9477 37 1 0.2311 -4.4454 1.5043 38 1 -2.0967 -2.9621 2.8409 39 1 -3.9378 -4.5189 3.4619 40 1 -4.8919 -6.7803 3.5482 41 1 -6.9502 -11.3792 4.2820 42 1 -1.3925 -8.3441 1.6417 43 1 -0.4258 -6.0882 1.5482 44 1 3.8788 0.9679 2.0730 45 1 5.2633 0.1752 1.5461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107186230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:40 Heat of formation + Delta-G solvation = -91.653797 kcal Electronic energy + Delta-G solvation = -26987.501385 eV Core-core repulsion = 22969.810633 eV Total energy + Delta-G solvation = -4017.690751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.65109 -40.95625 -40.07982 -38.61591 -37.03489 -34.92238 -34.75280 -34.25616 -33.96319 -32.00734 -30.12308 -28.58895 -27.87841 -27.28011 -24.47641 -23.77829 -22.43947 -22.13185 -21.12175 -20.67944 -19.77685 -19.17688 -18.68680 -18.38872 -17.36502 -16.99750 -16.72251 -16.59094 -16.28067 -15.81201 -15.66925 -15.63769 -15.46188 -15.26873 -14.93835 -14.39441 -14.27932 -14.25367 -14.06662 -13.70065 -13.55704 -13.37946 -13.17285 -12.98506 -12.73393 -12.65494 -12.51395 -12.35678 -12.03293 -11.94092 -11.85755 -11.30725 -11.14903 -11.12476 -10.93483 -10.68538 -10.65367 -10.08888 -9.91987 -8.74529 -8.53817 -6.25411 -0.27997 0.54913 1.10456 1.32165 1.36727 1.41558 1.51904 2.01103 2.25956 2.33593 2.64183 2.80358 3.00017 3.15360 3.69785 3.77223 3.84832 3.92201 3.93630 4.04824 4.21337 4.28059 4.33364 4.39499 4.47230 4.63426 4.64666 4.81563 4.83606 4.94496 4.98688 5.11232 5.14262 5.20976 5.26595 5.31006 5.37833 5.40413 5.47105 5.58302 5.70654 5.80470 5.82476 5.83379 6.14323 6.32170 6.52766 6.79407 7.20239 7.24330 7.50856 8.56917 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.001855 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.504610 B =15093.909010 C =15665.555714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.150 4.150 4 C 0.131 3.869 5 H 0.113 0.887 6 N -0.710 5.710 7 C 0.558 3.442 8 O -0.571 6.571 9 C -0.245 4.245 10 C 0.017 3.983 11 C -0.161 4.161 12 C -0.043 4.043 13 C -0.243 4.243 14 C 0.136 3.864 15 O -0.234 6.234 16 C -0.403 4.403 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.195 4.195 25 C -0.042 4.042 26 C 0.521 3.479 27 N -0.827 5.827 28 O -0.578 6.578 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.414 0.586 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.286 0.714 42 H 0.136 0.864 43 H 0.162 0.838 44 H 0.419 0.581 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.584 24.187 -7.280 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.208 4.208 4 C 0.023 3.977 5 H 0.131 0.869 6 N -0.363 5.363 7 C 0.350 3.650 8 O -0.453 6.453 9 C -0.265 4.265 10 C -0.003 4.003 11 C -0.162 4.162 12 C -0.061 4.061 13 C -0.262 4.262 14 C 0.086 3.914 15 O -0.140 6.140 16 C -0.479 4.479 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.556 5.556 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.185 1.185 24 C -0.214 4.214 25 C -0.059 4.059 26 C 0.305 3.695 27 N -0.392 5.392 28 O -0.457 6.457 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.251 0.749 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 21.247 23.811 -7.278 32.731 hybrid contribution -0.166 -0.883 0.158 0.913 sum 21.081 22.927 -7.120 31.949 Atomic orbital electron populations 1.21821 0.94240 1.01209 1.01938 1.21408 0.96640 0.97577 0.95877 1.21938 1.01704 0.93462 1.03705 1.20991 0.89345 0.85521 1.01892 0.86912 1.45606 1.18702 1.09862 1.62091 1.18306 0.80737 0.89418 0.76578 1.90785 1.61244 1.44110 1.49129 1.22756 0.98519 0.96076 1.09167 1.22169 0.93624 0.94201 0.90282 1.18832 0.96130 0.93493 1.07697 1.21301 0.94341 0.95716 0.94769 1.21235 1.02308 0.93561 1.09116 1.19927 0.93130 0.84412 0.93940 1.83464 1.37097 1.26439 1.67030 1.20763 0.96712 0.96217 1.34226 0.89731 1.25316 0.96317 1.01020 0.96054 1.69699 1.19102 1.26174 1.40606 0.85220 0.78471 0.77402 0.79678 1.19009 1.19235 1.18489 1.20476 0.93822 0.99315 1.07823 1.21345 0.99490 0.89933 0.95170 1.20569 0.89658 0.82875 0.76382 1.43696 1.11590 1.22240 1.61635 1.90753 1.75030 1.32116 1.47793 0.92283 0.92130 0.94504 0.91153 0.91236 0.91275 0.90861 0.74910 0.83544 0.85306 0.84037 0.86753 0.90385 0.84564 0.82060 0.74926 0.75438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.68 71.98 0.55 -1.77 16 2 C -0.09 -1.24 2.66 -10.80 -0.03 -1.27 16 3 C -0.15 -1.09 8.52 71.98 0.61 -0.47 16 4 C 0.13 1.90 2.23 44.24 0.10 2.00 16 5 H 0.11 1.57 7.58 -2.38 -0.02 1.55 16 6 N -0.71 -12.84 4.86 -450.51 -2.19 -15.03 16 7 C 0.56 12.50 5.94 86.33 0.51 13.01 16 8 O -0.57 -15.47 13.36 -4.40 -0.06 -15.53 16 9 C -0.24 -5.31 9.41 23.62 0.22 -5.08 16 10 C 0.02 0.43 9.45 23.82 0.23 0.65 16 11 C -0.16 -4.77 5.87 -20.13 -0.12 -4.89 16 12 C -0.04 -1.46 9.78 22.55 0.22 -1.24 16 13 C -0.24 -10.31 9.14 22.34 0.20 -10.10 16 14 C 0.14 6.13 6.66 22.72 0.15 6.28 16 15 O -0.23 -12.29 8.57 -20.31 -0.17 -12.46 16 16 C -0.40 -23.13 9.94 67.93 0.68 -22.45 16 17 H 0.09 5.07 5.42 -2.91 -0.02 5.06 16 18 C 0.01 0.70 5.49 84.86 0.47 1.17 16 19 N -0.92 -53.58 13.96 21.62 0.30 -53.28 16 20 Si 0.97 44.21 28.62 68.60 1.96 46.17 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 C -0.20 -7.02 9.97 22.34 0.22 -6.80 16 25 C -0.04 -1.21 9.40 22.55 0.21 -0.99 16 26 C 0.52 7.29 6.74 87.66 0.59 7.88 16 27 N -0.83 -4.32 7.74 -173.53 -1.34 -5.66 16 28 O -0.58 -12.74 16.85 -3.05 -0.05 -12.79 16 29 H 0.06 1.15 7.23 -2.38 -0.02 1.13 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.78 5.90 -2.39 -0.01 0.77 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.35 6.76 -2.39 -0.02 0.33 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.41 7.09 7.77 -92.71 -0.72 6.37 16 37 H 0.15 2.53 6.06 -2.91 -0.02 2.51 16 38 H 0.13 3.23 7.52 -2.91 -0.02 3.20 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.11 5.32 5.62 -2.91 -0.02 5.31 16 41 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 43 H 0.16 3.34 6.16 -2.91 -0.02 3.32 16 44 H 0.42 -0.10 8.54 -92.70 -0.79 -0.89 16 45 H 0.41 1.33 8.93 -92.71 -0.83 0.50 16 Total: -1.00 -72.58 374.65 2.00 -70.58 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -1.27 Total: 22.07 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.82 Total: -24.08 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -3.23 Total: -73.96 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.28 Total: -40.78 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.96 Total: 46.17 kcal Total: -72.58 2.00 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107186230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.072 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds