Wall clock time and date at job start Tue Mar 31 2020 17:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 H 1.09005 * 109.66100 * 180.86486 * 3 2 1 5 5 C 1.50076 * 109.52887 * 60.78672 * 3 2 1 6 6 O 1.21279 * 118.50654 * 47.49080 * 5 3 2 7 7 N 1.33379 * 123.00305 * 227.66709 * 5 3 2 8 8 C 1.45644 * 124.59436 * 4.16586 * 7 5 3 9 9 C 1.52987 * 110.77355 * 338.07513 * 8 7 5 10 10 N 1.47044 * 109.57241 * 301.15795 * 3 2 1 11 11 C 1.34780 * 121.34844 * 342.59115 * 10 3 2 12 12 O 1.21274 * 120.00328 * 353.90070 * 11 10 3 13 13 C 1.50704 * 119.99471 * 174.18344 * 11 10 3 14 14 C 1.50703 * 109.46801 * 179.72070 * 13 11 10 15 15 C 1.38303 * 119.93294 * 269.72312 * 14 13 11 16 16 C 1.38099 * 120.07153 * 179.72398 * 15 14 13 17 17 C 1.38875 * 119.92737 * 0.55203 * 16 15 14 18 18 O 1.35759 * 120.06738 * 179.74577 * 17 16 15 19 19 C 1.34833 * 116.99666 * 174.67821 * 18 17 16 20 20 H 1.07991 * 120.00263 * 5.02991 * 19 18 17 21 21 C 1.38653 * 119.99334 * 185.02950 * 19 18 17 22 22 N 1.31558 * 120.00369 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46930 * 59.99706 * 23 21 19 25 25 H 1.48496 * 109.47496 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47079 * 300.00338 * 23 21 19 27 27 C 1.38878 * 119.86461 * 359.72149 * 17 16 15 28 28 C 1.38098 * 119.92917 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.46984 * 184.66724 * 1 2 3 30 30 H 1.09010 * 109.46644 * 304.66406 * 1 2 3 31 31 H 1.09003 * 109.46870 * 64.65904 * 1 2 3 32 32 H 1.08997 * 109.46950 * 240.00386 * 2 1 3 33 33 H 1.09000 * 109.46886 * 120.00023 * 2 1 3 34 34 H 0.97005 * 117.70162 * 184.14507 * 7 5 3 35 35 H 1.09001 * 109.21734 * 217.74649 * 8 7 5 36 36 H 1.09001 * 109.21936 * 98.40966 * 8 7 5 37 37 H 1.08998 * 109.72351 * 287.05355 * 9 8 7 38 38 H 1.08998 * 109.75865 * 166.41924 * 9 8 7 39 39 H 1.08998 * 109.47457 * 299.71559 * 13 11 10 40 40 H 1.08997 * 109.47660 * 59.72334 * 13 11 10 41 41 H 1.07999 * 119.96148 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.03704 * 180.27271 * 16 15 14 43 43 H 0.97003 * 119.99457 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.03515 * 180.02562 * 27 17 16 45 45 H 1.07998 * 119.96235 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4462 -0.0155 5 6 1.5564 2.1456 1.2345 6 8 1.6794 1.5875 2.3042 7 7 0.9943 3.3549 1.2088 8 6 0.6997 4.1041 -0.0049 9 6 1.5678 3.6179 -1.1670 10 7 1.5284 2.1459 -1.1856 11 6 1.0378 1.4708 -2.2440 12 8 1.1129 0.2609 -2.2794 13 6 0.4017 2.2201 -3.3865 14 6 -0.0551 1.2408 -4.4369 15 6 0.8005 0.8786 -5.4614 16 6 0.3869 -0.0229 -6.4223 17 6 -0.8937 -0.5572 -6.3656 18 8 -1.3050 -1.4397 -7.3117 19 6 -2.5173 -2.0035 -7.1370 20 1 -3.1473 -1.6869 -6.3190 21 6 -2.9549 -2.9899 -8.0076 22 7 -2.1876 -3.3753 -9.0043 23 14 -4.6341 -3.7716 -7.7652 24 1 -5.6843 -2.7252 -7.8514 25 1 -4.8626 -4.7910 -8.8206 26 1 -4.6901 -4.4204 -6.4305 27 6 -1.7525 -0.1873 -5.3388 28 6 -1.3311 0.7107 -4.3780 29 1 -0.3633 -1.0242 0.0836 30 1 -0.3633 0.5846 0.8454 31 1 -0.3633 0.4399 -0.9288 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7655 3.7640 2.0581 35 1 0.8947 5.1621 0.1703 36 1 -0.3512 3.9716 -0.2622 37 1 2.5943 3.9565 -1.0261 38 1 1.1776 4.0082 -2.1069 39 1 -0.4553 2.7842 -3.0186 40 1 1.1289 2.9059 -3.8209 41 1 1.7949 1.2976 -5.5072 42 1 1.0570 -0.3086 -7.2196 43 1 -2.4938 -4.0656 -9.6131 44 1 -2.7489 -0.6014 -5.2918 45 1 -1.9986 0.9991 -3.5795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110305019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:55 Heat of formation + Delta-G solvation = -44.726768 kcal Electronic energy + Delta-G solvation = -28723.677627 eV Core-core repulsion = 24708.021784 eV Total energy + Delta-G solvation = -4015.655843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43026 -39.55414 -38.79683 -36.89861 -36.54310 -34.80116 -33.38758 -32.35012 -31.08527 -30.14706 -29.58872 -27.79588 -26.20509 -25.02794 -24.50566 -22.37486 -21.96963 -21.33005 -20.05919 -18.82866 -17.97396 -17.76416 -17.59828 -16.93259 -16.38752 -16.26588 -15.63144 -15.55960 -14.63026 -14.58790 -14.44653 -14.28123 -14.10433 -13.64965 -13.53915 -13.42837 -13.27456 -13.00742 -12.71770 -12.69462 -12.50491 -12.23396 -11.88192 -11.56948 -11.53291 -11.32845 -11.21398 -10.99585 -10.83345 -10.74112 -10.63564 -10.43504 -10.42061 -9.56702 -9.32186 -9.10921 -8.91188 -8.79789 -8.14877 -7.16162 -6.43353 -4.02030 2.16669 2.25580 2.26517 2.55234 2.59596 2.93440 3.14162 3.16339 3.18444 3.98358 4.03403 4.17366 4.40767 4.54895 4.62887 4.74340 4.86693 4.90059 4.95778 5.09144 5.18101 5.23218 5.25651 5.31531 5.37294 5.58557 5.62532 5.70215 5.74747 5.83948 5.89159 6.13991 6.22205 6.29952 6.38252 6.42029 6.47565 6.69933 6.84424 6.91213 7.05284 7.15595 7.24631 7.36666 7.46021 7.79371 7.84115 8.01717 8.18017 9.02301 9.72409 10.74633 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.002579 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.154323 B =10854.662860 C =11376.433808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.139 3.861 4 H 0.101 0.899 5 C 0.518 3.482 6 O -0.543 6.543 7 N -0.721 5.721 8 C 0.094 3.906 9 C 0.092 3.908 10 N -0.625 5.625 11 C 0.518 3.482 12 O -0.496 6.496 13 C -0.079 4.079 14 C -0.173 4.173 15 C -0.058 4.058 16 C -0.191 4.191 17 C 0.158 3.842 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.055 4.055 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 18.147 16.213 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.033 3.967 4 H 0.118 0.882 5 C 0.304 3.696 6 O -0.419 6.419 7 N -0.373 5.373 8 C -0.032 4.032 9 C -0.032 4.032 10 N -0.364 5.364 11 C 0.308 3.692 12 O -0.369 6.369 13 C -0.119 4.119 14 C -0.174 4.174 15 C -0.077 4.077 16 C -0.211 4.211 17 C 0.104 3.896 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.073 4.073 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.742 16.783 16.083 24.203 hybrid contribution -1.006 0.078 0.600 1.174 sum 5.736 16.861 16.683 24.403 Atomic orbital electron populations 1.21867 0.95254 1.01990 1.00975 1.22078 0.97371 0.91984 1.05027 1.21339 0.99521 0.94470 0.81397 0.88150 1.20353 0.76908 0.80977 0.91356 1.90778 1.56441 1.63935 1.30764 1.45384 1.63092 1.18630 1.10197 1.21784 1.00261 0.96194 0.84923 1.22087 1.01014 0.80409 0.99687 1.48359 1.64647 1.06191 1.17208 1.21006 0.77397 0.88406 0.82406 1.90678 1.54663 1.13895 1.77635 1.20479 1.00718 0.97657 0.93000 1.18583 0.95712 1.04870 0.98229 1.20379 0.97464 0.96218 0.93593 1.20151 0.94972 1.03327 1.02617 1.19385 0.92437 0.89675 0.88137 1.83979 1.35059 1.48997 1.40025 1.21278 0.91247 1.19340 1.14917 0.89125 1.25281 0.99815 0.96096 0.95280 1.70031 1.36645 1.28647 1.14470 0.85795 0.80336 0.78938 0.78450 1.19509 1.20277 1.19475 1.21098 1.01495 1.04217 0.98349 1.20478 0.94675 0.95442 0.96725 0.92484 0.94521 0.91888 0.86021 0.91266 0.76590 0.89188 0.91005 0.90077 0.87220 0.89053 0.88915 0.87425 0.86579 0.91977 0.85642 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.64 16 2 C -0.13 -1.65 4.91 -26.73 -0.13 -1.78 16 3 C 0.14 1.47 3.35 -69.09 -0.23 1.24 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.52 5.56 6.04 -11.91 -0.07 5.49 16 6 O -0.54 -7.83 17.16 5.56 0.10 -7.74 16 7 N -0.72 -5.07 5.42 -61.46 -0.33 -5.40 16 8 C 0.09 0.37 7.34 -4.51 -0.03 0.34 16 9 C 0.09 0.43 6.44 -3.63 -0.02 0.40 16 10 N -0.63 -5.68 2.83 -166.75 -0.47 -6.15 16 11 C 0.52 6.27 5.92 -10.98 -0.07 6.21 16 12 O -0.50 -8.07 10.93 5.56 0.06 -8.01 16 13 C -0.08 -0.85 4.24 -29.03 -0.12 -0.97 16 14 C -0.17 -2.77 4.38 -104.57 -0.46 -3.23 16 15 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 16 C -0.19 -4.05 9.99 -39.40 -0.39 -4.45 16 17 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 18 O -0.18 -5.10 9.76 0.01 0.00 -5.10 16 19 C -0.39 -11.04 9.49 30.89 0.29 -10.74 16 20 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 23 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.23 -5.06 9.17 -39.40 -0.36 -5.43 16 28 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.49 7.09 -51.92 -0.37 0.12 16 31 H 0.06 0.92 5.11 -51.93 -0.27 0.66 16 32 H 0.12 1.80 5.61 -52.26 -0.29 1.50 16 33 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.40 2.37 8.80 -40.82 -0.36 2.01 16 35 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.11 0.30 6.05 -51.93 -0.31 -0.01 16 39 H 0.09 0.77 8.02 -51.93 -0.42 0.36 16 40 H 0.09 0.74 7.53 -51.93 -0.39 0.35 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 44 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 45 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -35.73 362.46 -7.74 -43.48 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.90 Total: 5.30 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.39 Total: -12.76 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.05 Total: -36.29 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.16 Total: -20.85 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.73 -7.74 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110305019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.250 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds