Wall clock time and date at job start Tue Mar 31 2020 17:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 H 1.09005 * 109.66100 * 180.86486 * 3 2 1 5 5 C 1.50076 * 109.52887 * 60.78672 * 3 2 1 6 6 O 1.21279 * 118.50654 * 47.49080 * 5 3 2 7 7 N 1.33379 * 123.00305 * 227.66709 * 5 3 2 8 8 C 1.45644 * 124.59436 * 4.16586 * 7 5 3 9 9 C 1.52987 * 110.77355 * 338.07513 * 8 7 5 10 10 N 1.47044 * 109.57241 * 301.15795 * 3 2 1 11 11 C 1.34780 * 121.34844 * 342.59115 * 10 3 2 12 12 O 1.21274 * 120.00328 * 353.90070 * 11 10 3 13 13 C 1.50704 * 119.99471 * 174.18344 * 11 10 3 14 14 C 1.50703 * 109.46801 * 179.72070 * 13 11 10 15 15 C 1.38303 * 119.93294 * 269.72312 * 14 13 11 16 16 C 1.38099 * 120.07153 * 179.72398 * 15 14 13 17 17 C 1.38875 * 119.92737 * 0.55203 * 16 15 14 18 18 O 1.35759 * 120.06738 * 179.74577 * 17 16 15 19 19 C 1.34833 * 116.99666 * 174.67821 * 18 17 16 20 20 H 1.07991 * 120.00263 * 5.02991 * 19 18 17 21 21 C 1.38653 * 119.99334 * 185.02950 * 19 18 17 22 22 N 1.31558 * 120.00369 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46930 * 59.99706 * 23 21 19 25 25 H 1.48496 * 109.47496 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47079 * 300.00338 * 23 21 19 27 27 C 1.38878 * 119.86461 * 359.72149 * 17 16 15 28 28 C 1.38098 * 119.92917 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.46984 * 184.66724 * 1 2 3 30 30 H 1.09010 * 109.46644 * 304.66406 * 1 2 3 31 31 H 1.09003 * 109.46870 * 64.65904 * 1 2 3 32 32 H 1.08997 * 109.46950 * 240.00386 * 2 1 3 33 33 H 1.09000 * 109.46886 * 120.00023 * 2 1 3 34 34 H 0.97005 * 117.70162 * 184.14507 * 7 5 3 35 35 H 1.09001 * 109.21734 * 217.74649 * 8 7 5 36 36 H 1.09001 * 109.21936 * 98.40966 * 8 7 5 37 37 H 1.08998 * 109.72351 * 287.05355 * 9 8 7 38 38 H 1.08998 * 109.75865 * 166.41924 * 9 8 7 39 39 H 1.08998 * 109.47457 * 299.71559 * 13 11 10 40 40 H 1.08997 * 109.47660 * 59.72334 * 13 11 10 41 41 H 1.07999 * 119.96148 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.03704 * 180.27271 * 16 15 14 43 43 H 0.97003 * 119.99457 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.03515 * 180.02562 * 27 17 16 45 45 H 1.07998 * 119.96235 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4462 -0.0155 5 6 1.5564 2.1456 1.2345 6 8 1.6794 1.5875 2.3042 7 7 0.9943 3.3549 1.2088 8 6 0.6997 4.1041 -0.0049 9 6 1.5678 3.6179 -1.1670 10 7 1.5284 2.1459 -1.1856 11 6 1.0378 1.4708 -2.2440 12 8 1.1129 0.2609 -2.2794 13 6 0.4017 2.2201 -3.3865 14 6 -0.0551 1.2408 -4.4369 15 6 0.8005 0.8786 -5.4614 16 6 0.3869 -0.0229 -6.4223 17 6 -0.8937 -0.5572 -6.3656 18 8 -1.3050 -1.4397 -7.3117 19 6 -2.5173 -2.0035 -7.1370 20 1 -3.1473 -1.6869 -6.3190 21 6 -2.9549 -2.9899 -8.0076 22 7 -2.1876 -3.3753 -9.0043 23 14 -4.6341 -3.7716 -7.7652 24 1 -5.6843 -2.7252 -7.8514 25 1 -4.8626 -4.7910 -8.8206 26 1 -4.6901 -4.4204 -6.4305 27 6 -1.7525 -0.1873 -5.3388 28 6 -1.3311 0.7107 -4.3780 29 1 -0.3633 -1.0242 0.0836 30 1 -0.3633 0.5846 0.8454 31 1 -0.3633 0.4399 -0.9288 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.7655 3.7640 2.0581 35 1 0.8947 5.1621 0.1703 36 1 -0.3512 3.9716 -0.2622 37 1 2.5943 3.9565 -1.0261 38 1 1.1776 4.0082 -2.1069 39 1 -0.4553 2.7842 -3.0186 40 1 1.1289 2.9059 -3.8209 41 1 1.7949 1.2976 -5.5072 42 1 1.0570 -0.3086 -7.2196 43 1 -2.4938 -4.0656 -9.6131 44 1 -2.7489 -0.6014 -5.2918 45 1 -1.9986 0.9991 -3.5795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110305019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:54 Heat of formation + Delta-G solvation = -71.304640 kcal Electronic energy + Delta-G solvation = -28724.830130 eV Core-core repulsion = 24708.021784 eV Total energy + Delta-G solvation = -4016.808346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.23579 -40.82112 -40.14820 -38.26751 -37.52309 -35.65081 -34.49086 -34.11563 -32.39967 -31.72558 -30.20819 -28.88926 -27.66620 -26.67473 -25.14224 -23.60244 -23.18943 -22.64747 -21.13762 -19.82883 -19.54689 -18.81773 -18.45010 -18.32440 -17.19934 -17.09175 -16.59167 -16.49277 -16.24980 -16.07230 -15.68714 -15.48935 -15.14982 -15.08485 -14.91798 -14.48863 -14.31783 -14.26771 -13.97243 -13.64672 -13.58196 -13.39463 -12.94106 -12.84414 -12.67400 -12.53253 -12.38636 -12.28915 -12.27313 -12.14272 -12.10567 -11.97631 -11.35383 -11.15154 -10.78272 -10.15640 -10.07098 -9.71764 -9.65799 -8.85569 -8.46391 -6.14277 0.66308 0.70856 1.33812 1.43553 1.45284 1.50225 1.71214 1.81337 2.18130 2.27334 2.85168 3.18034 3.42320 3.56214 3.68500 3.87820 3.90461 4.01379 4.08879 4.10995 4.22267 4.26002 4.28848 4.47946 4.53340 4.62124 4.63157 4.65236 4.73182 4.79311 4.84493 4.99340 5.02537 5.13087 5.16559 5.17920 5.23536 5.34759 5.49141 5.61436 5.75652 5.79195 5.82024 6.04779 6.19294 6.26787 6.43167 6.98482 7.08948 7.31308 7.80843 8.76977 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.002579 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.154323 B =10854.662860 C =11376.433808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.141 3.859 4 H 0.111 0.889 5 C 0.517 3.483 6 O -0.590 6.590 7 N -0.709 5.709 8 C 0.087 3.913 9 C 0.082 3.918 10 N -0.615 5.615 11 C 0.517 3.483 12 O -0.549 6.549 13 C -0.077 4.077 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.207 4.207 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.017 2.983 24 H -0.254 1.254 25 H -0.271 1.271 26 H -0.261 1.261 27 C -0.246 4.246 28 C -0.058 4.058 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.406 0.594 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.113 0.887 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 22.550 18.469 29.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.034 3.966 4 H 0.129 0.871 5 C 0.303 3.697 6 O -0.471 6.471 7 N -0.359 5.359 8 C -0.036 4.036 9 C -0.040 4.040 10 N -0.352 5.352 11 C 0.308 3.692 12 O -0.427 6.427 13 C -0.116 4.116 14 C -0.143 4.143 15 C -0.072 4.072 16 C -0.227 4.227 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.836 3.164 24 H -0.178 1.178 25 H -0.195 1.195 26 H -0.185 1.185 27 C -0.265 4.265 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.148 0.852 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.799 21.325 18.377 28.960 hybrid contribution -0.803 -0.948 0.151 1.252 sum 5.997 20.377 18.528 28.186 Atomic orbital electron populations 1.21763 0.95823 1.01028 1.00518 1.21924 0.96780 0.93964 1.03532 1.21180 1.00093 0.93093 0.82249 0.87125 1.20299 0.77074 0.81865 0.90450 1.90763 1.58675 1.65484 1.32149 1.45404 1.61077 1.17417 1.12021 1.22128 1.00519 0.97800 0.83175 1.22573 1.02781 0.77077 1.01539 1.48315 1.63156 1.08180 1.15591 1.21158 0.77118 0.87801 0.83147 1.90707 1.56911 1.16180 1.78860 1.20630 1.03365 0.96625 0.90940 1.19215 0.94069 1.03016 0.97952 1.20880 0.99375 0.94576 0.92359 1.20449 0.93970 1.04406 1.03845 1.19959 0.94341 0.90434 0.89126 1.83938 1.35810 1.51712 1.42745 1.21761 0.91761 1.19937 1.15480 0.88327 1.26577 1.04377 0.96407 0.94723 1.70181 1.39340 1.30286 1.16253 0.84676 0.74865 0.78148 0.78695 1.17842 1.19511 1.18550 1.21213 1.00866 1.05436 0.98964 1.20897 0.96334 0.94164 0.96202 0.93938 0.94475 0.92316 0.87861 0.92301 0.75805 0.85150 0.90282 0.88174 0.84106 0.85179 0.84443 0.83323 0.87270 0.91871 0.86886 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.94 71.98 0.64 -2.97 16 2 C -0.12 -3.19 4.91 30.60 0.15 -3.04 16 3 C 0.14 2.64 3.35 43.95 0.15 2.79 16 4 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 5 C 0.52 9.89 6.04 87.68 0.53 10.42 16 6 O -0.59 -16.58 17.16 -3.03 -0.05 -16.63 16 7 N -0.71 -7.15 5.42 -467.52 -2.53 -9.68 16 8 C 0.09 0.15 7.34 86.54 0.63 0.78 16 9 C 0.08 0.22 6.44 86.23 0.56 0.77 16 10 N -0.62 -8.38 2.83 -799.87 -2.26 -10.64 16 11 C 0.52 10.28 5.92 87.66 0.52 10.80 16 12 O -0.55 -16.80 10.93 -3.01 -0.03 -16.83 16 13 C -0.08 -1.15 4.24 29.10 0.12 -1.02 16 14 C -0.14 -3.99 4.38 -19.83 -0.09 -4.07 16 15 C -0.05 -1.74 9.69 22.25 0.22 -1.52 16 16 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 17 C 0.11 5.70 6.65 22.58 0.15 5.85 16 18 O -0.24 -14.59 9.76 -22.87 -0.22 -14.81 16 19 C -0.41 -24.80 9.49 67.92 0.64 -24.15 16 20 H 0.10 5.45 5.20 -2.92 -0.02 5.44 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 22 N -0.92 -57.94 13.67 21.61 0.30 -57.65 16 23 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 24 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 C -0.25 -10.93 9.17 22.39 0.21 -10.73 16 28 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.96 7.09 -2.38 -0.02 0.94 16 31 H 0.06 1.62 5.11 -2.39 -0.01 1.61 16 32 H 0.10 3.09 5.61 -7.62 -0.04 3.05 16 33 H 0.06 1.58 7.84 -2.39 -0.02 1.56 16 34 H 0.41 3.36 8.80 -92.70 -0.82 2.55 16 35 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.14 -0.44 6.05 -2.39 -0.01 -0.45 16 39 H 0.13 1.12 8.02 -2.39 -0.02 1.10 16 40 H 0.14 1.00 7.53 -2.39 -0.02 0.98 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.11 5.18 5.64 -2.91 -0.02 5.17 16 45 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -89.36 362.46 2.75 -86.61 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.19 Total: 21.09 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 5.34 Total: -27.48 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -4.50 Total: -77.97 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.31 Total: -48.27 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -89.36 2.75 -86.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110305019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.305 kcal (2) G-P(sol) polarization free energy of solvation -89.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds