Wall clock time and date at job start Tue Mar 31 2020 17:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47405 * 2 1 4 4 H 1.09008 * 109.56787 * 55.23724 * 3 2 1 5 5 C 1.50433 * 109.56799 * 175.58948 * 3 2 1 6 6 O 1.21281 * 118.49530 * 287.09348 * 5 3 2 7 7 N 1.33390 * 123.01927 * 107.11645 * 5 3 2 8 8 C 1.45643 * 124.58971 * 4.32060 * 7 5 3 9 9 C 1.53465 * 110.73786 * 337.97796 * 8 7 5 10 10 N 1.47047 * 109.56741 * 295.00060 * 3 2 1 11 11 C 1.34775 * 121.35567 * 102.89491 * 10 3 2 12 12 O 1.21284 * 119.99992 * 359.97438 * 11 10 3 13 13 C 1.50698 * 120.00176 * 179.97438 * 11 10 3 14 14 C 1.50706 * 109.46931 * 179.97438 * 13 11 10 15 15 C 1.38299 * 119.93039 * 90.00305 * 14 13 11 16 16 C 1.38100 * 120.06840 * 179.97438 * 15 14 13 17 17 C 1.38882 * 119.93309 * 359.97438 * 16 15 14 18 18 O 1.35741 * 120.06963 * 179.97438 * 17 16 15 19 19 C 1.34832 * 117.00506 * 5.54159 * 18 17 16 20 20 H 1.07999 * 119.99652 * 354.94101 * 19 18 17 21 21 C 1.38651 * 120.00703 * 174.94177 * 19 18 17 22 22 N 1.31557 * 119.99696 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00329 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47075 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46918 * 299.99594 * 23 21 19 26 26 H 1.48496 * 109.47544 * 59.99564 * 23 21 19 27 27 C 1.38882 * 119.86015 * 0.25490 * 17 16 15 28 28 C 1.38101 * 119.92899 * 359.49348 * 27 17 16 29 29 H 1.09003 * 109.47475 * 300.00051 * 1 2 3 30 30 H 1.09006 * 109.46956 * 59.99796 * 1 2 3 31 31 H 1.08996 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46971 * 239.99795 * 2 1 3 33 33 H 1.09006 * 109.46956 * 120.00204 * 2 1 3 34 34 H 0.96995 * 117.70074 * 184.34040 * 7 5 3 35 35 H 1.09004 * 109.21640 * 98.43166 * 8 7 5 36 36 H 1.09001 * 109.21326 * 217.76531 * 8 7 5 37 37 H 1.08999 * 109.85525 * 287.31529 * 9 8 7 38 38 H 1.09011 * 109.83779 * 166.50484 * 9 8 7 39 39 H 1.09004 * 109.47313 * 60.00063 * 13 11 10 40 40 H 1.08995 * 109.47405 * 299.99330 * 13 11 10 41 41 H 1.07995 * 119.96602 * 359.95465 * 15 14 13 42 42 H 1.08001 * 120.03215 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00173 * 0.02562 * 22 21 19 44 44 H 1.07999 * 120.03676 * 179.72206 * 27 17 16 45 45 H 1.08000 * 119.96901 * 180.22722 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6096 1.9819 0.8438 5 6 3.5404 1.4463 0.1090 6 8 4.0438 1.1607 1.1748 7 7 4.3426 1.7498 -0.9126 8 6 3.8831 2.1981 -2.2199 9 6 2.4295 1.7691 -2.4614 10 7 1.6521 2.1020 -1.2557 11 6 0.6235 2.9715 -1.3025 12 8 -0.0037 3.2237 -0.2955 13 6 0.2526 3.6305 -2.6060 14 6 -0.9218 4.5495 -2.3879 15 6 -0.7085 5.8724 -2.0458 16 6 -1.7825 6.7172 -1.8458 17 6 -3.0779 6.2372 -1.9891 18 8 -4.1356 7.0650 -1.7927 19 6 -3.8617 8.3669 -1.5737 20 1 -2.8370 8.6946 -1.4791 21 6 -4.8955 9.2850 -1.4700 22 7 -6.1437 8.8859 -1.5857 23 14 -4.5159 11.0888 -1.1673 24 1 -5.7851 11.8566 -1.0965 25 1 -3.7797 11.2313 0.1145 26 1 -3.6814 11.6123 -2.2784 27 6 -3.2888 4.9070 -2.3281 28 6 -2.2105 4.0685 -2.5319 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.2991 1.6658 -0.7751 35 1 3.9519 3.2847 -2.2711 36 1 4.5173 1.7623 -2.9919 37 1 2.3857 0.6951 -2.6424 38 1 2.0237 2.3042 -3.3200 39 1 -0.0150 2.8666 -3.3361 40 1 1.1008 4.2061 -2.9765 41 1 0.2990 6.2452 -1.9346 42 1 -1.6153 7.7501 -1.5782 43 1 -6.3408 7.9492 -1.7433 44 1 -4.2949 4.5296 -2.4359 45 1 -2.3738 3.0349 -2.7991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110305020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:00 Heat of formation + Delta-G solvation = -74.113634 kcal Electronic energy + Delta-G solvation = -28329.909913 eV Core-core repulsion = 24312.979760 eV Total energy + Delta-G solvation = -4016.930153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25058 -39.56480 -38.84539 -37.01127 -36.51906 -35.24343 -33.30367 -32.43188 -31.21811 -30.22530 -29.79078 -27.89952 -26.18987 -24.75649 -24.36140 -22.53437 -21.96984 -21.40716 -20.09785 -18.95225 -18.36817 -17.86853 -17.52607 -16.86382 -16.72554 -16.20668 -15.59759 -15.31529 -15.00514 -14.80547 -14.43042 -14.21804 -14.10350 -13.90471 -13.66759 -13.51497 -13.37789 -13.03036 -12.93850 -12.64560 -12.51111 -12.48681 -12.08064 -11.82963 -11.62230 -11.25854 -11.23900 -11.08443 -10.90155 -10.76205 -10.51658 -10.29098 -10.27898 -9.80875 -9.61308 -9.40051 -8.98307 -8.75542 -8.22157 -7.24683 -6.76493 -4.05325 2.10627 2.18064 2.18226 2.50320 2.57724 2.85193 3.24453 3.29410 3.45979 3.94297 4.12230 4.12735 4.36473 4.50280 4.57416 4.59613 4.77095 4.78658 4.91142 5.06282 5.08196 5.10960 5.15255 5.19784 5.21232 5.34048 5.48818 5.53231 5.64601 5.67067 5.74937 5.76350 5.95800 6.09254 6.14754 6.30060 6.34495 6.61180 6.79125 6.82429 7.01342 7.10570 7.20666 7.31354 7.57233 7.72545 7.72975 8.08536 8.40783 8.92740 9.61667 10.67582 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002406 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.983007 B =11632.797540 C =11949.950246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.132 3.868 4 H 0.130 0.870 5 C 0.520 3.480 6 O -0.544 6.544 7 N -0.718 5.718 8 C 0.094 3.906 9 C 0.091 3.909 10 N -0.624 5.624 11 C 0.517 3.483 12 O -0.507 6.507 13 C -0.077 4.077 14 C -0.171 4.171 15 C -0.055 4.055 16 C -0.228 4.228 17 C 0.160 3.840 18 O -0.202 6.202 19 C -0.471 4.471 20 H 0.084 0.916 21 C 0.010 3.990 22 N -0.881 5.881 23 Si 1.096 2.904 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.194 4.194 28 C -0.058 4.058 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.282 0.718 44 H 0.115 0.885 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.412 -16.564 -5.948 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.025 3.975 4 H 0.147 0.853 5 C 0.305 3.695 6 O -0.421 6.421 7 N -0.371 5.371 8 C -0.031 4.031 9 C -0.033 4.033 10 N -0.362 5.362 11 C 0.306 3.694 12 O -0.379 6.379 13 C -0.117 4.117 14 C -0.173 4.173 15 C -0.073 4.073 16 C -0.248 4.248 17 C 0.107 3.893 18 O -0.106 6.106 19 C -0.547 4.547 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.513 5.513 23 Si 0.920 3.080 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.213 4.213 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.034 -15.016 -4.640 24.685 hybrid contribution 1.421 -1.547 -0.313 2.124 sum 20.455 -16.564 -4.953 26.782 Atomic orbital electron populations 1.21681 0.93869 1.01655 1.03029 1.21744 0.97691 0.93481 1.03064 1.21375 0.89809 0.96293 0.90020 0.85260 1.20341 0.89881 0.75850 0.83411 1.90792 1.75602 1.48928 1.26757 1.45357 1.10539 1.68400 1.12776 1.21879 0.96059 1.00599 0.84604 1.22185 0.89973 1.02252 0.88902 1.48439 1.33890 1.45237 1.08609 1.21113 0.78470 0.77811 0.92013 1.90770 1.50219 1.60608 1.36305 1.20439 0.98514 0.98568 0.94158 1.18617 0.92614 0.93990 1.12043 1.20510 0.97460 0.92725 0.96650 1.21117 0.92105 1.01163 1.10376 1.19238 0.87371 0.90515 0.92160 1.83660 1.29881 1.19619 1.77438 1.22208 0.96795 0.80699 1.55035 0.89887 1.26539 0.91824 1.05761 0.95418 1.70572 1.18698 1.20406 1.41630 0.83111 0.76229 0.71764 0.76938 1.19773 1.20719 1.20735 1.20134 0.98864 0.92102 1.10249 1.20371 0.91512 0.97610 0.98100 0.91876 0.92560 0.92386 0.91552 0.89962 0.76456 0.90885 0.89129 0.90032 0.87219 0.88797 0.88888 0.87779 0.85484 0.90793 0.86705 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.07 5.50 -26.73 -0.15 -1.21 16 3 C 0.13 1.37 2.46 -68.92 -0.17 1.21 16 4 H 0.13 1.71 7.23 -51.92 -0.38 1.33 16 5 C 0.52 5.50 7.10 -11.73 -0.08 5.42 16 6 O -0.54 -7.81 17.80 5.56 0.10 -7.71 16 7 N -0.72 -4.92 5.42 -61.07 -0.33 -5.25 16 8 C 0.09 0.36 7.35 -4.26 -0.03 0.33 16 9 C 0.09 0.42 6.34 -3.38 -0.02 0.39 16 10 N -0.62 -5.67 2.25 -166.26 -0.37 -6.04 16 11 C 0.52 6.47 6.76 -10.99 -0.07 6.40 16 12 O -0.51 -8.89 15.59 5.55 0.09 -8.80 16 13 C -0.08 -0.85 4.20 -29.03 -0.12 -0.97 16 14 C -0.17 -2.82 4.38 -104.57 -0.46 -3.27 16 15 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 16 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 17 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 18 O -0.20 -5.78 9.16 0.07 0.00 -5.78 16 19 C -0.47 -13.45 9.49 30.88 0.29 -13.16 16 20 H 0.08 2.23 5.20 -52.49 -0.27 1.95 16 21 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 22 N -0.88 -26.57 13.70 55.48 0.76 -25.81 16 23 Si 1.10 23.91 29.92 -169.99 -5.09 18.82 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 28 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.60 7.06 -51.93 -0.37 0.23 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.47 7.33 -51.93 -0.38 0.09 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.40 2.27 8.80 -40.82 -0.36 1.91 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.08 0.28 7.38 -51.93 -0.38 -0.10 16 38 H 0.11 0.30 6.03 -51.92 -0.31 -0.02 16 39 H 0.09 0.77 7.76 -51.93 -0.40 0.36 16 40 H 0.09 0.78 7.83 -51.93 -0.41 0.38 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 43 H 0.28 8.69 7.97 -40.82 -0.33 8.37 16 44 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -36.85 372.20 -7.63 -44.48 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.06 Total: 5.30 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.33 Total: -14.83 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.05 Total: -37.09 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.19 Total: -22.29 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.09 Total: 18.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.85 -7.63 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110305020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.637 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds