Wall clock time and date at job start Tue Mar 31 2020 17:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47405 * 2 1 4 4 H 1.09008 * 109.56787 * 55.23724 * 3 2 1 5 5 C 1.50433 * 109.56799 * 175.58948 * 3 2 1 6 6 O 1.21281 * 118.49530 * 287.09348 * 5 3 2 7 7 N 1.33390 * 123.01927 * 107.11645 * 5 3 2 8 8 C 1.45643 * 124.58971 * 4.32060 * 7 5 3 9 9 C 1.53465 * 110.73786 * 337.97796 * 8 7 5 10 10 N 1.47047 * 109.56741 * 295.00060 * 3 2 1 11 11 C 1.34775 * 121.35567 * 102.89491 * 10 3 2 12 12 O 1.21284 * 119.99992 * 359.97438 * 11 10 3 13 13 C 1.50698 * 120.00176 * 179.97438 * 11 10 3 14 14 C 1.50706 * 109.46931 * 179.97438 * 13 11 10 15 15 C 1.38299 * 119.93039 * 90.00305 * 14 13 11 16 16 C 1.38100 * 120.06840 * 179.97438 * 15 14 13 17 17 C 1.38882 * 119.93309 * 359.97438 * 16 15 14 18 18 O 1.35741 * 120.06963 * 179.97438 * 17 16 15 19 19 C 1.34832 * 117.00506 * 5.54159 * 18 17 16 20 20 H 1.07999 * 119.99652 * 354.94101 * 19 18 17 21 21 C 1.38651 * 120.00703 * 174.94177 * 19 18 17 22 22 N 1.31557 * 119.99696 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00329 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47075 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46918 * 299.99594 * 23 21 19 26 26 H 1.48496 * 109.47544 * 59.99564 * 23 21 19 27 27 C 1.38882 * 119.86015 * 0.25490 * 17 16 15 28 28 C 1.38101 * 119.92899 * 359.49348 * 27 17 16 29 29 H 1.09003 * 109.47475 * 300.00051 * 1 2 3 30 30 H 1.09006 * 109.46956 * 59.99796 * 1 2 3 31 31 H 1.08996 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46971 * 239.99795 * 2 1 3 33 33 H 1.09006 * 109.46956 * 120.00204 * 2 1 3 34 34 H 0.96995 * 117.70074 * 184.34040 * 7 5 3 35 35 H 1.09004 * 109.21640 * 98.43166 * 8 7 5 36 36 H 1.09001 * 109.21326 * 217.76531 * 8 7 5 37 37 H 1.08999 * 109.85525 * 287.31529 * 9 8 7 38 38 H 1.09011 * 109.83779 * 166.50484 * 9 8 7 39 39 H 1.09004 * 109.47313 * 60.00063 * 13 11 10 40 40 H 1.08995 * 109.47405 * 299.99330 * 13 11 10 41 41 H 1.07995 * 119.96602 * 359.95465 * 15 14 13 42 42 H 1.08001 * 120.03215 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00173 * 0.02562 * 22 21 19 44 44 H 1.07999 * 120.03676 * 179.72206 * 27 17 16 45 45 H 1.08000 * 119.96901 * 180.22722 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6096 1.9819 0.8438 5 6 3.5404 1.4463 0.1090 6 8 4.0438 1.1607 1.1748 7 7 4.3426 1.7498 -0.9126 8 6 3.8831 2.1981 -2.2199 9 6 2.4295 1.7691 -2.4614 10 7 1.6521 2.1020 -1.2557 11 6 0.6235 2.9715 -1.3025 12 8 -0.0037 3.2237 -0.2955 13 6 0.2526 3.6305 -2.6060 14 6 -0.9218 4.5495 -2.3879 15 6 -0.7085 5.8724 -2.0458 16 6 -1.7825 6.7172 -1.8458 17 6 -3.0779 6.2372 -1.9891 18 8 -4.1356 7.0650 -1.7927 19 6 -3.8617 8.3669 -1.5737 20 1 -2.8370 8.6946 -1.4791 21 6 -4.8955 9.2850 -1.4700 22 7 -6.1437 8.8859 -1.5857 23 14 -4.5159 11.0888 -1.1673 24 1 -5.7851 11.8566 -1.0965 25 1 -3.7797 11.2313 0.1145 26 1 -3.6814 11.6123 -2.2784 27 6 -3.2888 4.9070 -2.3281 28 6 -2.2105 4.0685 -2.5319 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.2991 1.6658 -0.7751 35 1 3.9519 3.2847 -2.2711 36 1 4.5173 1.7623 -2.9919 37 1 2.3857 0.6951 -2.6424 38 1 2.0237 2.3042 -3.3200 39 1 -0.0150 2.8666 -3.3361 40 1 1.1008 4.2061 -2.9765 41 1 0.2990 6.2452 -1.9346 42 1 -1.6153 7.7501 -1.5782 43 1 -6.3408 7.9492 -1.7433 44 1 -4.2949 4.5296 -2.4359 45 1 -2.3738 3.0349 -2.7991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110305020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:59 Heat of formation + Delta-G solvation = -101.454592 kcal Electronic energy + Delta-G solvation = -28331.095506 eV Core-core repulsion = 24312.979760 eV Total energy + Delta-G solvation = -4018.115746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.03161 -40.95062 -40.16987 -38.41821 -37.57962 -35.94863 -34.50290 -34.02510 -32.56212 -31.83712 -30.38077 -28.91756 -27.49475 -26.61987 -24.87217 -23.63107 -23.31531 -22.75304 -21.19501 -20.24313 -19.56340 -18.74658 -18.66625 -18.19721 -17.49612 -17.12510 -16.81792 -16.38124 -16.13676 -15.92947 -15.70122 -15.61478 -15.31852 -15.18023 -15.02234 -14.85559 -14.71746 -14.23848 -13.84062 -13.57054 -13.26735 -13.09373 -13.00267 -12.90790 -12.75104 -12.63397 -12.44058 -12.35113 -12.30729 -12.05656 -12.01039 -11.94148 -11.39264 -11.27537 -10.87679 -10.70300 -10.18968 -9.82051 -9.73034 -8.99455 -8.93903 -6.25112 0.55817 0.60352 1.36957 1.47209 1.59466 1.63969 1.76391 1.77797 2.18379 2.35394 2.82502 3.11665 3.34184 3.35561 3.66184 3.79561 3.87633 3.92267 4.00180 4.01022 4.13596 4.21667 4.29501 4.44384 4.45393 4.48648 4.54535 4.65767 4.69385 4.76643 4.77583 4.93279 4.98116 5.00692 5.02446 5.21360 5.24683 5.27709 5.30187 5.51871 5.70866 5.73803 5.74768 6.05703 6.14667 6.27273 6.35239 6.86088 7.02422 7.19382 7.62770 8.49678 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002406 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.983007 B =11632.797540 C =11949.950246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.132 3.868 4 H 0.091 0.909 5 C 0.518 3.482 6 O -0.594 6.594 7 N -0.705 5.705 8 C 0.088 3.912 9 C 0.079 3.921 10 N -0.612 5.612 11 C 0.517 3.483 12 O -0.571 6.571 13 C -0.075 4.075 14 C -0.141 4.141 15 C -0.060 4.060 16 C -0.244 4.244 17 C 0.113 3.887 18 O -0.255 6.255 19 C -0.488 4.488 20 H 0.089 0.911 21 C -0.045 4.045 22 N -0.918 5.918 23 Si 1.145 2.855 24 H -0.272 1.272 25 H -0.263 1.263 26 H -0.257 1.257 27 C -0.207 4.207 28 C -0.054 4.054 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.113 0.887 43 H 0.259 0.741 44 H 0.112 0.888 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.661 -18.539 -8.857 32.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C 0.025 3.975 4 H 0.109 0.891 5 C 0.304 3.696 6 O -0.474 6.474 7 N -0.356 5.356 8 C -0.036 4.036 9 C -0.042 4.042 10 N -0.348 5.348 11 C 0.307 3.693 12 O -0.449 6.449 13 C -0.114 4.114 14 C -0.142 4.142 15 C -0.078 4.078 16 C -0.263 4.263 17 C 0.064 3.936 18 O -0.163 6.163 19 C -0.564 4.564 20 H 0.107 0.893 21 C -0.241 4.241 22 N -0.553 5.553 23 Si 0.960 3.040 24 H -0.197 1.197 25 H -0.188 1.188 26 H -0.181 1.181 27 C -0.226 4.226 28 C -0.072 4.072 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.131 0.869 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 23.392 -17.057 -7.641 29.942 hybrid contribution 0.441 -1.300 0.486 1.456 sum 23.833 -18.357 -7.154 30.922 Atomic orbital electron populations 1.21627 0.94576 1.02170 1.01372 1.21688 0.96834 0.92566 1.04067 1.21187 0.89846 0.96829 0.89659 0.89131 1.20309 0.89955 0.75797 0.83565 1.90772 1.76220 1.51563 1.28879 1.45377 1.10650 1.66411 1.13130 1.22230 0.96353 1.01356 0.83652 1.22712 0.89673 1.04284 0.87543 1.48386 1.33088 1.43716 1.09615 1.21304 0.78555 0.77858 0.91555 1.90782 1.52718 1.62966 1.38420 1.20615 0.97403 0.99028 0.94311 1.19286 0.94380 0.93930 1.06595 1.20948 0.97814 0.93341 0.95651 1.21241 0.92578 1.01409 1.11077 1.19847 0.87753 0.91535 0.94456 1.83635 1.31869 1.19967 1.80802 1.22578 0.97311 0.81485 1.54991 0.89313 1.28410 0.91144 1.10148 0.94413 1.70711 1.19983 1.18786 1.45812 0.82595 0.76624 0.66375 0.78367 1.19688 1.18796 1.18133 1.20467 1.00406 0.91462 1.10311 1.20904 0.90953 0.98934 0.96434 0.94712 0.92997 0.90730 0.88743 0.90709 0.75607 0.90245 0.84889 0.87910 0.84017 0.84191 0.84692 0.84357 0.86918 0.93228 0.86978 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.67 71.98 0.70 -1.84 16 2 C -0.11 -1.77 5.50 30.59 0.17 -1.60 16 3 C 0.13 2.56 2.46 44.06 0.11 2.67 16 4 H 0.09 2.50 7.23 -2.38 -0.02 2.49 16 5 C 0.52 10.05 7.10 87.79 0.62 10.67 16 6 O -0.59 -16.97 17.80 -3.03 -0.05 -17.03 16 7 N -0.71 -6.97 5.42 -466.29 -2.53 -9.50 16 8 C 0.09 0.12 7.35 86.70 0.64 0.76 16 9 C 0.08 0.19 6.34 86.39 0.55 0.74 16 10 N -0.61 -8.60 2.25 -798.32 -1.80 -10.40 16 11 C 0.52 10.94 6.76 87.66 0.59 11.53 16 12 O -0.57 -19.37 15.59 -3.04 -0.05 -19.41 16 13 C -0.07 -1.15 4.20 29.10 0.12 -1.03 16 14 C -0.14 -4.08 4.38 -19.83 -0.09 -4.16 16 15 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 16 C -0.24 -11.11 9.17 22.39 0.21 -10.91 16 17 C 0.11 5.86 6.65 22.58 0.15 6.01 16 18 O -0.25 -15.73 9.16 -22.66 -0.21 -15.94 16 19 C -0.49 -29.57 9.49 67.92 0.64 -28.92 16 20 H 0.09 5.03 5.20 -2.91 -0.02 5.02 16 21 C -0.05 -2.68 5.49 84.83 0.47 -2.22 16 22 N -0.92 -58.96 13.70 21.61 0.30 -58.66 16 23 Si 1.15 49.42 29.92 68.60 2.05 51.47 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 26 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 27 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 28 C -0.05 -1.77 9.69 22.25 0.22 -1.56 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.97 7.06 -2.38 -0.02 0.96 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 0.95 7.33 -2.39 -0.02 0.94 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.41 3.21 8.80 -92.71 -0.82 2.39 16 35 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.10 -0.05 7.38 -2.39 -0.02 -0.07 16 38 H 0.14 -0.48 6.03 -2.38 -0.01 -0.50 16 39 H 0.14 1.05 7.76 -2.39 -0.02 1.03 16 40 H 0.14 1.12 7.83 -2.39 -0.02 1.11 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.11 5.33 5.64 -2.91 -0.02 5.32 16 43 H 0.26 17.37 7.97 -92.71 -0.74 16.63 16 44 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -93.33 372.20 3.49 -89.84 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.25 Total: 20.06 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 5.53 Total: -30.43 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -4.03 Total: -78.56 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.31 Total: -52.38 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Total: -93.33 3.49 -89.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110305020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.612 kcal (2) G-P(sol) polarization free energy of solvation -93.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds