Wall clock time and date at job start Tue Mar 31 2020 17:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 N 1.46495 * 109.47143 * 120.00371 * 2 1 3 5 5 C 1.46766 * 124.34984 * 120.00071 * 4 2 1 6 6 C 1.54481 * 105.47406 * 162.98038 * 5 4 2 7 7 C 1.54628 * 101.76538 * 25.41329 * 6 5 4 8 8 H 1.08997 * 110.48787 * 94.01062 * 7 6 5 9 9 N 1.46502 * 110.48858 * 216.52216 * 7 6 5 10 10 C 1.34777 * 119.99911 * 204.99650 * 9 7 6 11 11 O 1.21586 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.47538 * 119.99578 * 180.02562 * 10 9 7 13 13 C 1.39669 * 120.19728 * 359.97438 * 12 10 9 14 14 C 1.37830 * 119.91713 * 180.02562 * 13 12 10 15 15 C 1.38575 * 120.32526 * 359.72833 * 14 13 12 16 16 C 1.38025 * 120.39919 * 0.55200 * 15 14 13 17 17 C 1.38838 * 120.07230 * 359.44787 * 16 15 14 18 18 O 1.35514 * 120.16318 * 180.29406 * 17 16 15 19 19 C 1.34822 * 116.99909 * 354.40555 * 18 17 16 20 20 H 1.07993 * 119.99766 * 5.06695 * 19 18 17 21 21 C 1.38695 * 119.99822 * 185.06286 * 19 18 17 22 22 N 1.31516 * 120.00387 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47575 * 59.99980 * 23 21 19 25 25 H 1.48504 * 109.47071 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46913 * 299.99269 * 23 21 19 27 27 C 1.34422 * 124.35170 * 299.99413 * 4 2 1 28 28 O 1.21287 * 124.93598 * 0.44809 * 27 4 2 29 29 H 1.09004 * 109.46680 * 299.99937 * 1 2 3 30 30 H 1.09001 * 109.47389 * 59.99741 * 1 2 3 31 31 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46680 * 240.00063 * 2 1 3 33 33 H 1.08997 * 109.47196 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46955 * 299.99968 * 3 2 1 35 35 H 1.08992 * 109.46947 * 59.99982 * 3 2 1 36 36 H 1.08993 * 110.25082 * 43.98188 * 5 4 2 37 37 H 1.09003 * 110.24598 * 281.97857 * 5 4 2 38 38 H 1.08997 * 110.97220 * 267.29708 * 6 5 4 39 39 H 1.09004 * 110.97326 * 143.53064 * 6 5 4 40 40 H 0.97001 * 119.99346 * 25.00140 * 9 7 6 41 41 H 1.07998 * 120.03847 * 0.02562 * 13 12 10 42 42 H 1.07999 * 119.83691 * 180.02562 * 14 13 12 43 43 H 1.07989 * 119.80081 * 180.30229 * 15 14 13 44 44 H 1.08001 * 119.96527 * 179.72569 * 16 15 14 45 45 H 0.97002 * 120.00563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8655 -1.8888 1.1726 6 6 3.4724 -1.9924 2.5894 7 6 2.4205 -1.2418 3.4386 8 1 1.6983 -1.9422 3.8578 9 7 3.0726 -0.4794 4.5062 10 6 2.3925 -0.1759 5.6296 11 8 1.2380 -0.5353 5.7571 12 6 3.0491 0.5924 6.7044 13 6 4.3753 1.0068 6.5624 14 6 4.9832 1.7238 7.5704 15 6 4.2832 2.0412 8.7235 16 6 2.9739 1.6334 8.8802 17 6 2.3453 0.9105 7.8754 18 8 1.0580 0.5143 8.0248 19 6 0.4791 0.7525 9.2189 20 1 1.0108 1.3109 9.9750 21 6 -0.7994 0.2803 9.4762 22 7 -1.4471 -0.3993 8.5552 23 14 -1.6018 0.6109 11.1303 24 1 -1.7110 2.0764 11.3435 25 1 -2.9577 0.0056 11.1526 26 1 -0.7749 0.0138 12.2097 27 6 1.7481 -0.3084 2.4562 28 8 1.0640 0.6457 2.7610 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8899 36 1 3.6563 -1.7772 0.4309 37 1 2.2645 -2.7716 0.9543 38 1 4.4402 -1.4931 2.6367 39 1 3.5562 -3.0330 2.9029 40 1 3.9937 -0.1929 4.4044 41 1 4.9238 0.7657 5.6638 42 1 6.0086 2.0439 7.4590 43 1 4.7663 2.6075 9.5058 44 1 2.4364 1.8809 9.7837 45 1 -2.3412 -0.7299 8.7352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114656292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:10 Heat of formation + Delta-G solvation = -87.446037 kcal Electronic energy + Delta-G solvation = -28898.016101 eV Core-core repulsion = 24880.507812 eV Total energy + Delta-G solvation = -4017.508289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.92203 -41.05469 -39.61543 -38.03207 -37.53344 -36.53301 -34.47982 -34.30029 -32.15084 -30.58322 -30.19900 -28.17483 -28.11935 -27.32856 -24.79868 -23.49649 -23.21341 -22.64980 -21.58896 -20.00950 -19.81395 -19.34818 -18.11160 -17.80455 -17.47059 -16.78008 -16.39289 -16.17337 -16.02392 -15.85680 -15.59394 -15.37429 -15.23841 -14.88339 -14.64383 -14.57872 -14.40133 -14.22376 -13.99462 -13.72788 -13.55997 -13.06139 -13.00125 -12.96047 -12.78477 -12.70280 -12.51271 -12.36882 -12.27823 -12.21933 -12.15875 -11.96425 -11.44191 -11.21495 -10.83710 -10.64744 -9.97279 -9.74978 -9.69353 -9.04438 -8.45152 -6.17097 0.11704 0.72388 1.29961 1.42107 1.43955 1.48816 1.87703 2.14312 2.15621 2.38679 2.86699 3.20838 3.41593 3.46211 3.47286 3.89086 3.95497 3.99968 4.06431 4.07927 4.11058 4.27554 4.28802 4.50056 4.52935 4.64491 4.66063 4.66993 4.79328 4.83377 4.86297 4.95898 4.98577 5.05716 5.08168 5.12478 5.21147 5.26799 5.44706 5.47179 5.60051 5.68439 5.74094 5.94530 6.13534 6.16863 6.63368 6.93210 7.20185 7.47906 7.80141 8.75385 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003511 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.963758 B = 7972.657388 C = 9288.762001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.150 3.850 3 C -0.163 4.163 4 N -0.613 5.613 5 C 0.102 3.898 6 C -0.118 4.118 7 C 0.107 3.893 8 H 0.089 0.911 9 N -0.701 5.701 10 C 0.550 3.450 11 O -0.562 6.562 12 C -0.247 4.247 13 C -0.029 4.029 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.259 4.259 17 C 0.148 3.852 18 O -0.190 6.190 19 C -0.430 4.430 20 H 0.108 0.892 21 C -0.024 4.024 22 N -0.907 5.907 23 Si 1.024 2.976 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.250 1.250 27 C 0.491 3.509 28 O -0.567 6.567 29 H 0.023 0.977 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.025 0.975 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.415 0.585 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.123 0.877 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.120 -2.458 -17.109 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.048 3.952 3 C -0.221 4.221 4 N -0.348 5.348 5 C -0.019 4.019 6 C -0.156 4.156 7 C -0.003 4.003 8 H 0.107 0.893 9 N -0.357 5.357 10 C 0.340 3.660 11 O -0.440 6.440 12 C -0.251 4.251 13 C -0.047 4.047 14 C -0.218 4.218 15 C -0.058 4.058 16 C -0.278 4.278 17 C 0.092 3.908 18 O -0.093 6.093 19 C -0.506 4.506 20 H 0.125 0.875 21 C -0.223 4.223 22 N -0.543 5.543 23 Si 0.842 3.158 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.174 1.174 27 C 0.277 3.723 28 O -0.445 6.445 29 H 0.042 0.958 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.044 0.956 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.254 0.746 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.173 0.827 44 H 0.141 0.859 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.527 -2.420 -17.141 23.934 hybrid contribution -1.128 0.374 0.990 1.547 sum 15.399 -2.046 -16.151 22.409 Atomic orbital electron populations 1.22190 0.96254 1.02152 1.02098 1.21174 0.93496 0.93384 0.87110 1.22137 1.01831 0.96047 1.02076 1.48589 1.51513 1.29817 1.04861 1.22452 0.94698 0.86638 0.98138 1.23006 0.97390 1.03072 0.92101 1.21694 0.98175 0.92983 0.87422 0.89338 1.45348 1.16353 1.58276 1.15759 1.18590 0.85537 0.79096 0.82728 1.90931 1.18945 1.53757 1.80345 1.19311 0.97321 1.12953 0.95543 1.21308 0.90115 0.93727 0.99595 1.21192 1.01998 1.04441 0.94155 1.21450 0.91653 0.94577 0.98091 1.21306 0.98478 1.07336 1.00681 1.20120 0.84857 0.91642 0.94140 1.84192 1.20532 1.69656 1.34922 1.22036 1.00387 1.37234 0.90957 0.87508 1.26825 0.96136 0.95196 1.04124 1.70342 1.12977 1.34771 1.36169 0.84603 0.77262 0.79510 0.74417 1.17892 1.19761 1.17434 1.21737 0.80197 0.84871 0.85544 1.90719 1.40205 1.31206 1.82361 0.95754 0.89240 0.92220 0.84778 0.91147 0.89504 0.95572 0.85899 0.89220 0.86651 0.85992 0.74568 0.82092 0.81527 0.82673 0.85905 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.20 71.98 0.66 -3.21 16 2 C 0.15 2.75 3.47 44.99 0.16 2.91 16 3 C -0.16 -3.27 9.20 71.98 0.66 -2.60 16 4 N -0.61 -13.30 2.83 -794.04 -2.25 -15.55 16 5 C 0.10 1.10 7.30 86.83 0.63 1.74 16 6 C -0.12 -1.54 6.87 31.65 0.22 -1.33 16 7 C 0.11 3.21 3.28 44.98 0.15 3.35 16 8 H 0.09 3.29 7.55 -2.39 -0.02 3.28 16 9 N -0.70 -23.57 5.08 -445.74 -2.26 -25.83 16 10 C 0.55 26.95 7.76 86.70 0.67 27.62 16 11 O -0.56 -35.79 14.81 16.91 0.25 -35.54 16 12 C -0.25 -11.41 5.89 -19.99 -0.12 -11.53 16 13 C -0.03 -0.92 9.54 22.52 0.21 -0.71 16 14 C -0.20 -5.53 10.03 22.25 0.22 -5.30 16 15 C -0.04 -1.29 10.03 22.30 0.22 -1.06 16 16 C -0.26 -11.61 9.16 22.36 0.20 -11.40 16 17 C 0.15 8.05 6.66 22.91 0.15 8.20 16 18 O -0.19 -12.81 7.84 0.82 0.01 -12.80 16 19 C -0.43 -27.27 9.49 67.93 0.64 -26.63 16 20 H 0.11 6.04 5.21 -2.91 -0.02 6.02 16 21 C -0.02 -1.48 5.49 84.85 0.47 -1.01 16 22 N -0.91 -62.08 13.67 21.62 0.30 -61.78 16 23 Si 1.02 46.07 29.55 68.60 2.03 48.09 16 24 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 27 C 0.49 16.85 7.05 87.90 0.62 17.47 16 28 O -0.57 -27.06 15.11 -3.05 -0.05 -27.11 16 29 H 0.02 0.80 6.77 -2.39 -0.02 0.78 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.13 1.25 8.07 -2.39 -0.02 1.23 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.02 0.77 6.80 -2.39 -0.02 0.76 16 36 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.12 0.92 7.82 -2.39 -0.02 0.90 16 39 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.42 9.77 6.46 -92.71 -0.60 9.18 16 41 H 0.16 3.37 6.40 -2.91 -0.02 3.35 16 42 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.16 3.68 8.06 -2.92 -0.02 3.66 16 44 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 45 H 0.27 16.96 8.31 -92.71 -0.77 16.19 16 Total: -1.00 -107.71 372.76 4.24 -103.48 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.43 Total: 30.53 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.78 Total: -3.49 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.22 Total: -103.16 kcal Atomic # 8 Polarization: -75.66 SS G_CDS: 0.21 Total: -75.45 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -107.71 4.24 -103.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114656292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.032 kcal (2) G-P(sol) polarization free energy of solvation -107.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds