Wall clock time and date at job start Tue Mar 31 2020 16:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99658 * 2 1 4 4 C 1.50696 * 120.00189 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47389 * 94.99788 * 4 2 1 6 6 C 1.34776 * 120.00005 * 180.02562 * 5 4 2 7 7 O 1.21366 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.49346 * 120.00198 * 180.02562 * 6 5 4 9 9 O 1.21375 * 120.00137 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00198 * 179.97438 * 8 6 5 11 11 C 1.39725 * 120.00075 * 185.27471 * 10 8 6 12 12 C 1.38984 * 120.04684 * 213.34588 * 11 10 8 13 13 C 1.38107 * 120.03379 * 180.02562 * 12 11 10 14 14 C 1.38233 * 120.13033 * 359.72420 * 13 12 11 15 15 C 1.38774 * 120.09339 * 0.55479 * 14 13 12 16 16 O 1.35895 * 120.01966 * 179.72165 * 15 14 13 17 17 C 1.42910 * 116.99682 * 359.72501 * 16 15 14 18 18 C 1.52994 * 109.46845 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47100 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99514 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99923 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99683 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00079 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47482 * 89.99909 * 23 21 19 25 25 H 1.48503 * 109.46739 * 209.99954 * 23 21 19 26 26 H 1.48494 * 109.47215 * 329.99317 * 23 21 19 27 27 C 1.38610 * 119.96227 * 359.44292 * 15 14 13 28 28 H 1.07996 * 119.99824 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00281 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47334 * 270.00204 * 3 2 1 31 31 H 1.08997 * 109.47499 * 29.99939 * 3 2 1 32 32 H 1.08996 * 109.47284 * 150.00248 * 3 2 1 33 33 H 1.09001 * 109.46969 * 334.99359 * 4 2 1 34 34 H 1.09003 * 109.46587 * 214.99979 * 4 2 1 35 35 H 0.97003 * 119.99980 * 0.02562 * 5 4 2 36 36 H 0.96999 * 120.00055 * 5.27611 * 10 8 6 37 37 H 1.08001 * 119.98784 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.93791 * 179.97438 * 13 12 11 39 39 H 1.08002 * 119.95065 * 180.29542 * 14 13 12 40 40 H 1.09003 * 109.46580 * 299.99856 * 17 16 15 41 41 H 1.08993 * 109.47222 * 59.99916 * 17 16 15 42 42 H 1.09005 * 109.47722 * 299.99833 * 18 17 16 43 43 H 1.09002 * 109.47382 * 59.99759 * 18 17 16 44 44 H 0.96999 * 119.99811 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.06040 * 180.25507 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4119 -1.6672 -1.3766 6 6 3.0926 -2.8042 -1.6225 7 8 3.4173 -3.5277 -0.7038 8 6 3.4483 -3.1731 -3.0252 9 8 3.1240 -2.4493 -3.9440 10 7 4.1295 -4.3098 -3.2710 11 6 4.5583 -4.6006 -4.5687 12 6 4.6112 -5.9191 -5.0050 13 6 5.0356 -6.2063 -6.2875 14 6 5.4033 -5.1838 -7.1420 15 6 5.3581 -3.8658 -6.7100 16 8 5.7253 -2.8622 -7.5495 17 6 6.1531 -3.2369 -8.8605 18 6 6.5226 -1.9824 -9.6544 19 6 6.9743 -2.3775 -11.0368 20 1 6.9952 -3.4192 -11.3207 21 6 7.3598 -1.4090 -11.9392 22 7 7.7544 -1.7539 -13.1454 23 14 7.3228 0.3929 -11.4482 24 1 8.6322 0.7726 -10.8596 25 1 7.0586 1.2275 -12.6478 26 1 6.2480 0.6112 -10.4470 27 6 4.9327 -3.5731 -5.4237 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 2.2451 1.6199 -1.0277 31 1 1.4744 2.0648 0.5138 32 1 3.0158 1.1749 0.5138 33 1 1.4386 -2.0856 0.4335 34 1 2.9742 -1.1989 0.5889 35 1 2.1527 -1.0887 -2.1109 36 1 4.3220 -4.9261 -2.5471 37 1 4.3210 -6.7197 -4.3407 38 1 5.0765 -7.2314 -6.6249 39 1 5.7302 -5.4114 -8.1459 40 1 7.0229 -3.8896 -8.7861 41 1 5.3459 -3.7638 -9.3693 42 1 5.6525 -1.3299 -9.7287 43 1 7.3296 -1.4550 -9.1457 44 1 8.0260 -1.0725 -13.7801 45 1 4.8930 -2.5477 -5.0872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126526830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:08 Heat of formation + Delta-G solvation = -64.293116 kcal Electronic energy + Delta-G solvation = -26701.371164 eV Core-core repulsion = 22684.866861 eV Total energy + Delta-G solvation = -4016.504303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33660 -39.97587 -38.99499 -37.34927 -37.13801 -34.95420 -33.79426 -33.32956 -31.16493 -30.06360 -29.31126 -28.06154 -27.51355 -25.38409 -24.62390 -22.77683 -21.94915 -20.91160 -20.30029 -19.78281 -18.75213 -18.06527 -17.18419 -16.78565 -16.48180 -16.11754 -16.00593 -15.63156 -15.51347 -15.36994 -15.20208 -14.71902 -14.29946 -14.16686 -14.05431 -13.60151 -13.50663 -13.25613 -12.95857 -12.68451 -12.59918 -12.26717 -12.15941 -11.97231 -11.80917 -11.72206 -11.57598 -10.96847 -10.86896 -10.49711 -10.20288 -10.09113 -9.97564 -9.82116 -9.75725 -9.69330 -9.34795 -8.62668 -8.42534 -7.95292 -6.13775 -4.14651 0.78272 1.31479 1.47529 1.54771 2.11426 2.81687 3.23810 3.28852 3.36108 3.42205 3.72317 3.85226 4.04838 4.11412 4.31735 4.39229 4.83661 4.89631 5.06989 5.09090 5.11197 5.16630 5.20447 5.25149 5.29455 5.31840 5.47534 5.53184 5.65223 5.67111 5.89929 5.91224 5.94819 6.06124 6.16988 6.19885 6.38975 6.42801 6.57823 6.58002 6.78882 6.96531 7.08164 7.23057 7.33414 7.57628 7.61830 7.88171 8.38286 8.86819 9.46575 10.98655 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.002233 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.056635 B =12537.870987 C =14653.041138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.121 4.121 4 C 0.153 3.847 5 N -0.695 5.695 6 C 0.512 3.488 7 O -0.518 6.518 8 C 0.504 3.496 9 O -0.489 6.489 10 N -0.641 5.641 11 C 0.171 3.829 12 C -0.187 4.187 13 C -0.059 4.059 14 C -0.219 4.219 15 C 0.164 3.836 16 O -0.316 6.316 17 C 0.072 3.928 18 C -0.009 4.009 19 C -0.526 4.526 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.162 4.162 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.416 0.584 36 H 0.422 0.578 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.266 0.734 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.767 -2.207 28.662 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.178 4.178 4 C 0.031 3.969 5 N -0.348 5.348 6 C 0.292 3.708 7 O -0.394 6.394 8 C 0.285 3.715 9 O -0.362 6.362 10 N -0.287 5.287 11 C 0.077 3.923 12 C -0.208 4.208 13 C -0.078 4.078 14 C -0.238 4.238 15 C 0.116 3.884 16 O -0.229 6.229 17 C -0.002 4.002 18 C -0.047 4.047 19 C -0.564 4.564 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.707 3.293 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.182 4.182 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.697 -1.869 28.565 31.315 hybrid contribution 0.014 0.685 -0.031 0.686 sum -12.683 -1.184 28.533 31.248 Atomic orbital electron populations 1.23954 0.95111 1.02684 0.97884 1.21771 0.95540 0.95308 1.02765 1.20889 1.00249 0.93947 1.02691 1.20494 0.99906 0.94110 0.82377 1.45812 1.55472 1.23134 1.10406 1.19963 0.79440 0.82302 0.89068 1.90786 1.52458 1.50670 1.45485 1.20190 0.79371 0.82350 0.89590 1.90862 1.50413 1.49781 1.45135 1.43052 1.53622 1.22413 1.09661 1.17249 0.97637 0.93399 0.83975 1.20670 1.08364 0.94170 0.97546 1.20707 0.95851 0.98929 0.92332 1.21461 1.08282 0.92067 1.02039 1.18861 0.92005 0.87551 0.89976 1.86141 1.78724 1.32475 1.25526 1.23121 0.98167 1.00916 0.78021 1.19593 0.97355 0.92793 0.94949 1.20832 1.45117 0.95801 0.94678 0.90715 1.24934 0.94222 0.99231 0.94653 1.69891 1.44220 1.34058 1.05376 0.86757 0.79259 0.84919 0.78354 1.20069 1.21179 1.18709 1.20226 1.05503 1.00081 0.92427 0.87974 0.87587 0.91029 0.91424 0.91545 0.90203 0.90079 0.74728 0.73956 0.85694 0.85309 0.84697 0.92355 0.92335 0.95351 0.95822 0.92452 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 13.89 29.01 0.40 -0.33 16 2 C -0.15 -0.80 5.42 -101.07 -0.55 -1.35 16 3 C -0.12 -0.56 10.03 36.01 0.36 -0.20 16 4 C 0.15 0.97 5.83 -5.20 -0.03 0.94 16 5 N -0.69 -5.50 5.54 -61.95 -0.34 -5.85 16 6 C 0.51 5.15 7.89 -11.63 -0.09 5.06 16 7 O -0.52 -5.97 16.48 5.48 0.09 -5.88 16 8 C 0.50 5.84 7.62 -11.63 -0.09 5.75 16 9 O -0.49 -6.97 14.16 5.48 0.08 -6.89 16 10 N -0.64 -6.89 5.32 -10.31 -0.05 -6.95 16 11 C 0.17 2.22 6.27 -83.77 -0.53 1.69 16 12 C -0.19 -2.12 9.96 -39.35 -0.39 -2.51 16 13 C -0.06 -0.71 10.03 -39.63 -0.40 -1.11 16 14 C -0.22 -3.26 9.04 -39.39 -0.36 -3.61 16 15 C 0.16 2.82 6.68 -39.25 -0.26 2.55 16 16 O -0.32 -6.31 10.13 -19.41 -0.20 -6.50 16 17 C 0.07 1.48 4.68 37.15 0.17 1.65 16 18 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 19 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 20 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 22 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 23 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 C -0.16 -2.56 8.59 -39.23 -0.34 -2.90 16 28 H 0.10 0.43 7.99 -52.49 -0.42 0.01 16 29 H 0.11 0.39 8.04 -52.48 -0.42 -0.03 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.26 8.06 -51.93 -0.42 -0.16 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.08 0.50 7.99 -51.93 -0.41 0.08 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.42 3.10 7.93 -40.82 -0.32 2.78 16 36 H 0.42 3.51 8.30 -40.82 -0.34 3.17 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.96 6.29 -52.49 -0.33 1.63 16 40 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 41 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 42 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 43 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.14 2.33 6.42 -52.49 -0.34 1.99 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -33.14 387.13 -7.39 -40.53 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.26 Total: 3.05 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.64 Total: -7.88 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.38 Total: -39.26 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.03 Total: -19.27 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.14 -7.39 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126526830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.763 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds