Wall clock time and date at job start Tue Mar 31 2020 16:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99658 * 2 1 4 4 C 1.50696 * 120.00189 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47389 * 94.99788 * 4 2 1 6 6 C 1.34776 * 120.00005 * 180.02562 * 5 4 2 7 7 O 1.21366 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.49346 * 120.00198 * 180.02562 * 6 5 4 9 9 O 1.21375 * 120.00137 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00198 * 179.97438 * 8 6 5 11 11 C 1.39725 * 120.00075 * 185.27471 * 10 8 6 12 12 C 1.38984 * 120.04684 * 213.34588 * 11 10 8 13 13 C 1.38107 * 120.03379 * 180.02562 * 12 11 10 14 14 C 1.38233 * 120.13033 * 359.72420 * 13 12 11 15 15 C 1.38774 * 120.09339 * 0.55479 * 14 13 12 16 16 O 1.35895 * 120.01966 * 179.72165 * 15 14 13 17 17 C 1.42910 * 116.99682 * 359.72501 * 16 15 14 18 18 C 1.52994 * 109.46845 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47100 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99514 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99923 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99683 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00079 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47482 * 89.99909 * 23 21 19 25 25 H 1.48503 * 109.46739 * 209.99954 * 23 21 19 26 26 H 1.48494 * 109.47215 * 329.99317 * 23 21 19 27 27 C 1.38610 * 119.96227 * 359.44292 * 15 14 13 28 28 H 1.07996 * 119.99824 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00281 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47334 * 270.00204 * 3 2 1 31 31 H 1.08997 * 109.47499 * 29.99939 * 3 2 1 32 32 H 1.08996 * 109.47284 * 150.00248 * 3 2 1 33 33 H 1.09001 * 109.46969 * 334.99359 * 4 2 1 34 34 H 1.09003 * 109.46587 * 214.99979 * 4 2 1 35 35 H 0.97003 * 119.99980 * 0.02562 * 5 4 2 36 36 H 0.96999 * 120.00055 * 5.27611 * 10 8 6 37 37 H 1.08001 * 119.98784 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.93791 * 179.97438 * 13 12 11 39 39 H 1.08002 * 119.95065 * 180.29542 * 14 13 12 40 40 H 1.09003 * 109.46580 * 299.99856 * 17 16 15 41 41 H 1.08993 * 109.47222 * 59.99916 * 17 16 15 42 42 H 1.09005 * 109.47722 * 299.99833 * 18 17 16 43 43 H 1.09002 * 109.47382 * 59.99759 * 18 17 16 44 44 H 0.96999 * 119.99811 * 180.02562 * 22 21 19 45 45 H 1.08001 * 120.06040 * 180.25507 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4119 -1.6672 -1.3766 6 6 3.0926 -2.8042 -1.6225 7 8 3.4173 -3.5277 -0.7038 8 6 3.4483 -3.1731 -3.0252 9 8 3.1240 -2.4493 -3.9440 10 7 4.1295 -4.3098 -3.2710 11 6 4.5583 -4.6006 -4.5687 12 6 4.6112 -5.9191 -5.0050 13 6 5.0356 -6.2063 -6.2875 14 6 5.4033 -5.1838 -7.1420 15 6 5.3581 -3.8658 -6.7100 16 8 5.7253 -2.8622 -7.5495 17 6 6.1531 -3.2369 -8.8605 18 6 6.5226 -1.9824 -9.6544 19 6 6.9743 -2.3775 -11.0368 20 1 6.9952 -3.4192 -11.3207 21 6 7.3598 -1.4090 -11.9392 22 7 7.7544 -1.7539 -13.1454 23 14 7.3228 0.3929 -11.4482 24 1 8.6322 0.7726 -10.8596 25 1 7.0586 1.2275 -12.6478 26 1 6.2480 0.6112 -10.4470 27 6 4.9327 -3.5731 -5.4237 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 2.2451 1.6199 -1.0277 31 1 1.4744 2.0648 0.5138 32 1 3.0158 1.1749 0.5138 33 1 1.4386 -2.0856 0.4335 34 1 2.9742 -1.1989 0.5889 35 1 2.1527 -1.0887 -2.1109 36 1 4.3220 -4.9261 -2.5471 37 1 4.3210 -6.7197 -4.3407 38 1 5.0765 -7.2314 -6.6249 39 1 5.7302 -5.4114 -8.1459 40 1 7.0229 -3.8896 -8.7861 41 1 5.3459 -3.7638 -9.3693 42 1 5.6525 -1.3299 -9.7287 43 1 7.3296 -1.4550 -9.1457 44 1 8.0260 -1.0725 -13.7801 45 1 4.8930 -2.5477 -5.0872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126526830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:07 Heat of formation + Delta-G solvation = -87.093358 kcal Electronic energy + Delta-G solvation = -26702.359857 eV Core-core repulsion = 22684.866861 eV Total energy + Delta-G solvation = -4017.492996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.25786 -41.05760 -40.02218 -38.52385 -37.70966 -35.96208 -35.35793 -34.43874 -32.94974 -31.31619 -30.47556 -28.57920 -28.01432 -27.13164 -25.59856 -23.81658 -23.36147 -22.17941 -21.44066 -20.54769 -19.79616 -19.03731 -18.63973 -18.03567 -17.37834 -17.05378 -16.99679 -16.91046 -16.78780 -16.48794 -16.12092 -15.91536 -15.46341 -15.04764 -14.86882 -14.70412 -14.55939 -14.40258 -14.35103 -13.98783 -13.48888 -13.39890 -13.20728 -13.01488 -12.78792 -12.68437 -12.62171 -12.34660 -12.12869 -12.08969 -11.88967 -11.70847 -11.45703 -11.33495 -10.92942 -10.82386 -10.42719 -10.17044 -9.52801 -9.10330 -8.35741 -6.42055 -0.16988 0.42593 0.50005 0.80375 1.34618 1.36281 1.40403 1.49093 1.94224 2.22096 2.32175 2.62129 2.76271 2.99109 3.25875 3.64268 3.86190 3.91603 4.11095 4.14610 4.19525 4.22302 4.35564 4.41597 4.49271 4.56267 4.58225 4.66878 4.73182 4.79977 4.94070 5.00634 5.08225 5.13396 5.13662 5.15105 5.28589 5.33897 5.45147 5.51150 5.57181 5.71913 5.78587 5.84312 6.15376 6.16650 6.47974 6.55401 6.63315 6.74142 7.22993 8.79727 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011742 B = 0.002233 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.056635 B =12537.870987 C =14653.041138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 C -0.121 4.121 4 C 0.152 3.848 5 N -0.684 5.684 6 C 0.518 3.482 7 O -0.533 6.533 8 C 0.504 3.496 9 O -0.519 6.519 10 N -0.629 5.629 11 C 0.170 3.830 12 C -0.168 4.168 13 C -0.052 4.052 14 C -0.229 4.229 15 C 0.129 3.871 16 O -0.337 6.337 17 C 0.086 3.914 18 C -0.008 4.008 19 C -0.535 4.535 20 H 0.045 0.955 21 C 0.014 3.986 22 N -0.940 5.940 23 Si 0.947 3.053 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.254 1.254 27 C -0.178 4.178 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.418 0.582 36 H 0.436 0.564 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.270 0.730 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.832 -2.711 31.070 34.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C -0.178 4.178 4 C 0.031 3.969 5 N -0.337 5.337 6 C 0.298 3.702 7 O -0.411 6.411 8 C 0.286 3.714 9 O -0.394 6.394 10 N -0.277 5.277 11 C 0.076 3.924 12 C -0.188 4.188 13 C -0.070 4.070 14 C -0.248 4.248 15 C 0.082 3.918 16 O -0.251 6.251 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.573 4.573 20 H 0.064 0.936 21 C -0.184 4.184 22 N -0.580 5.580 23 Si 0.770 3.230 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.178 1.178 27 C -0.199 4.199 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.277 0.723 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.773 -2.387 31.020 34.024 hybrid contribution 0.270 0.717 -0.682 1.026 sum -13.503 -1.669 30.337 33.249 Atomic orbital electron populations 1.24125 0.94942 1.03451 0.96441 1.21735 0.95749 0.94893 1.03940 1.20898 1.00383 0.93953 1.02557 1.20614 1.00159 0.94899 0.81248 1.45888 1.54199 1.22240 1.11340 1.19656 0.79759 0.82800 0.88013 1.90782 1.53483 1.51349 1.45451 1.20521 0.78831 0.82048 0.89997 1.90856 1.51697 1.50682 1.46167 1.42999 1.52929 1.22493 1.09324 1.17373 0.97050 0.93585 0.84382 1.21136 1.05747 0.94225 0.97688 1.21137 0.94044 0.99840 0.91996 1.21592 1.08751 0.91834 1.02627 1.19113 0.94445 0.87991 0.90221 1.86044 1.79857 1.34027 1.25209 1.22724 0.98545 0.98897 0.78666 1.19457 0.97033 0.94452 0.93574 1.21090 1.44892 0.94643 0.96637 0.93649 1.25850 0.93839 1.04181 0.94542 1.70016 1.45519 1.35804 1.06644 0.85709 0.79885 0.79017 0.78415 1.18944 1.20349 1.17761 1.20209 1.06769 1.00213 0.92679 0.87585 0.86499 0.91453 0.90505 0.91619 0.89827 0.90084 0.74439 0.72314 0.81602 0.81684 0.84950 0.91829 0.92112 0.95702 0.95631 0.92087 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 13.89 67.78 0.94 -0.20 16 2 C -0.16 -1.49 5.42 -16.49 -0.09 -1.58 16 3 C -0.12 -1.00 10.03 71.24 0.71 -0.28 16 4 C 0.15 1.76 5.83 85.63 0.50 2.26 16 5 N -0.68 -10.24 5.54 -468.25 -2.59 -12.83 16 6 C 0.52 9.90 7.89 87.24 0.69 10.59 16 7 O -0.53 -11.55 16.48 -3.30 -0.05 -11.60 16 8 C 0.50 11.31 7.62 87.24 0.66 11.97 16 9 O -0.52 -14.85 14.16 -3.32 -0.05 -14.90 16 10 N -0.63 -12.46 5.32 -304.89 -1.62 -14.08 16 11 C 0.17 4.13 6.27 38.20 0.24 4.37 16 12 C -0.17 -3.19 9.96 22.42 0.22 -2.97 16 13 C -0.05 -1.08 10.03 22.24 0.22 -0.86 16 14 C -0.23 -6.59 9.04 22.40 0.20 -6.39 16 15 C 0.13 4.46 6.68 22.49 0.15 4.61 16 16 O -0.34 -13.80 10.13 -92.36 -0.94 -14.74 16 17 C 0.09 3.62 4.68 71.98 0.34 3.95 16 18 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 19 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 20 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 21 C 0.01 0.83 5.47 84.66 0.46 1.29 16 22 N -0.94 -58.20 13.96 21.45 0.30 -57.90 16 23 Si 0.95 44.79 27.47 68.60 1.88 46.68 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 27 C -0.18 -5.66 8.59 22.50 0.19 -5.47 16 28 H 0.11 0.71 7.99 -2.91 -0.02 0.69 16 29 H 0.12 0.63 8.04 -2.91 -0.02 0.61 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.48 8.06 -2.39 -0.02 0.46 16 32 H 0.06 0.54 8.08 -2.39 -0.02 0.52 16 33 H 0.08 0.93 7.99 -2.39 -0.02 0.91 16 34 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.42 6.00 7.93 -92.71 -0.74 5.26 16 36 H 0.44 6.16 8.30 -92.71 -0.77 5.39 16 37 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.13 3.80 6.29 -2.91 -0.02 3.78 16 40 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 41 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 42 H 0.02 1.23 7.20 -2.38 -0.02 1.21 16 43 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.12 4.22 6.42 -2.91 -0.02 4.21 16 Total: -1.00 -72.99 387.13 2.23 -70.77 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -0.53 Total: 18.13 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 5.83 Total: -9.53 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -3.92 Total: -84.82 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.04 Total: -41.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -72.99 2.23 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126526830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.327 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds