Wall clock time and date at job start Tue Mar 31 2020 17:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 H 1.09005 * 109.46434 * 299.88514 * 3 2 1 5 5 C 1.50699 * 109.47421 * 179.88661 * 3 2 1 6 6 H 1.07996 * 119.99969 * 243.73063 * 5 3 2 7 7 C 1.37883 * 119.99848 * 63.73376 * 5 3 2 8 8 N 1.31515 * 119.99778 * 355.90038 * 7 5 3 9 9 Si 1.86801 * 119.99850 * 175.90268 * 7 5 3 10 10 H 1.48500 * 109.47023 * 94.99785 * 9 7 5 11 11 H 1.48495 * 109.46808 * 214.99294 * 9 7 5 12 12 H 1.48496 * 109.47252 * 334.99700 * 9 7 5 13 13 N 1.46493 * 109.47273 * 59.88396 * 3 2 1 14 14 C 1.34779 * 120.00236 * 275.00251 * 13 3 2 15 15 O 1.21362 * 119.99639 * 0.02562 * 14 13 3 16 16 C 1.49363 * 120.00310 * 179.97438 * 14 13 3 17 17 O 1.21361 * 120.00046 * 0.02562 * 16 14 13 18 18 N 1.34779 * 120.00445 * 180.27638 * 16 14 13 19 19 C 1.39146 * 120.00276 * 175.32389 * 18 16 14 20 20 C 1.39282 * 119.90403 * 35.75168 * 19 18 16 21 21 C 1.36587 * 120.09828 * 179.97438 * 20 19 18 22 22 C 1.40077 * 119.89882 * 359.97438 * 21 20 19 23 23 C 1.46857 * 120.09240 * 180.02562 * 22 21 20 24 24 C 1.50700 * 120.00382 * 1.22109 * 23 22 21 25 25 O 1.21296 * 120.00122 * 181.21505 * 23 22 21 26 26 C 1.40033 * 119.81320 * 0.02562 * 22 21 20 27 27 C 1.50707 * 120.05089 * 179.97438 * 26 22 21 28 28 C 1.36622 * 119.90025 * 359.71826 * 26 22 21 29 29 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47077 * 299.99949 * 1 2 3 31 31 H 1.08997 * 109.47662 * 60.00286 * 1 2 3 32 32 H 1.08997 * 109.47531 * 239.99775 * 2 1 3 33 33 H 1.08997 * 109.47662 * 119.99714 * 2 1 3 34 34 H 0.97005 * 119.99584 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00264 * 94.99858 * 13 3 2 36 36 H 0.97004 * 119.99324 * 355.32704 * 18 16 14 37 37 H 1.08004 * 119.95066 * 0.02562 * 20 19 18 38 38 H 1.07999 * 120.05302 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47207 * 89.99158 * 24 23 22 40 40 H 1.08998 * 109.47742 * 209.99967 * 24 23 22 41 41 H 1.09004 * 109.46677 * 329.99732 * 24 23 22 42 42 H 1.09002 * 109.46873 * 81.85632 * 27 26 22 43 43 H 1.09001 * 109.46730 * 201.85854 * 27 26 22 44 44 H 1.08996 * 109.46942 * 321.85706 * 27 26 22 45 45 H 1.08005 * 119.95369 * 180.29915 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6782 1.9557 -0.8911 5 6 3.5470 1.4426 0.0028 6 1 4.0853 1.8572 0.8422 7 6 4.2384 0.9135 -1.0664 8 7 3.5851 0.3364 -2.0512 9 14 6.1029 1.0164 -1.1160 10 1 6.6824 -0.2394 -0.5751 11 1 6.5510 1.2041 -2.5192 12 1 6.5573 2.1659 -0.2931 13 7 1.5494 2.1340 1.1947 14 6 0.3274 2.7025 1.1903 15 8 -0.3667 2.6412 0.1966 16 6 -0.1731 3.4070 2.4085 17 8 0.5209 3.4678 3.4023 18 7 -1.3973 3.9707 2.4060 19 6 -1.9028 4.5416 3.5699 20 6 -1.0473 5.2049 4.4463 21 6 -1.5393 5.7672 5.5896 22 6 -2.9067 5.6766 5.8799 23 6 -3.4404 6.2801 7.1077 24 6 -2.5215 7.0220 8.0438 25 8 -4.6209 6.1816 7.3684 26 6 -3.7633 5.0088 4.9960 27 6 -5.2352 4.9075 5.3033 28 6 -3.2635 4.4537 3.8520 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.0716 -0.0361 -2.8032 35 1 2.1040 2.1826 1.9891 36 1 -1.9259 3.9783 1.5927 37 1 0.0067 5.2754 4.2210 38 1 -0.8754 6.2817 6.2685 39 1 -2.4853 8.0737 7.7597 40 1 -2.8940 6.9339 9.0644 41 1 -1.5204 6.5950 7.9843 42 1 -5.7335 5.8288 5.0016 43 1 -5.6634 4.0671 4.7570 44 1 -5.3732 4.7535 6.3734 45 1 -3.9241 3.9427 3.1673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128112315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:46 Heat of formation + Delta-G solvation = -81.213039 kcal Electronic energy + Delta-G solvation = -27766.773215 eV Core-core repulsion = 23749.535208 eV Total energy + Delta-G solvation = -4017.238006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15372 -40.18675 -38.87860 -37.88045 -35.63938 -34.91040 -33.15397 -32.48175 -31.30904 -31.06168 -29.39154 -27.41756 -27.14607 -25.28169 -23.42216 -22.87238 -21.94240 -20.45619 -19.98807 -19.56429 -18.76960 -17.27493 -17.01861 -16.59740 -16.15462 -15.81906 -15.44068 -15.38470 -15.19726 -14.66205 -14.44071 -14.38690 -14.04605 -13.66908 -13.48183 -13.33936 -13.02021 -12.83636 -12.64407 -12.45932 -12.40758 -12.22503 -12.16055 -11.68769 -11.56794 -11.35282 -11.25544 -11.05199 -10.88515 -10.52645 -10.42606 -10.32649 -9.81956 -9.71918 -9.22894 -9.14780 -9.06108 -8.69113 -8.43552 -8.10716 -6.23451 -4.32571 0.30046 1.16011 1.60855 2.18000 2.53040 3.19693 3.27405 3.30364 3.43921 3.62764 3.82338 3.95041 4.27939 4.44918 4.55377 4.73852 4.93380 4.96142 5.03020 5.05668 5.09330 5.16704 5.23582 5.43771 5.53409 5.59767 5.61813 5.84211 5.99934 6.04425 6.14532 6.23507 6.27255 6.29669 6.46967 6.66081 6.84665 6.88972 7.02834 7.07220 7.19816 7.30177 7.41157 7.56341 7.67913 7.76686 7.99151 8.34447 8.53821 8.78457 9.34411 10.82660 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.002273 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.727936 B =12316.168866 C =13173.573054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.508 3.492 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.192 3.808 20 C -0.145 4.145 21 C -0.047 4.047 22 C -0.203 4.203 23 C 0.397 3.603 24 C -0.202 4.202 25 O -0.462 6.462 26 C -0.001 4.001 27 C -0.125 4.125 28 C -0.163 4.163 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.426 0.574 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 10.485 14.294 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.292 3.708 17 O -0.373 6.373 18 N -0.299 5.299 19 C 0.096 3.904 20 C -0.165 4.165 21 C -0.065 4.065 22 C -0.204 4.204 23 C 0.278 3.722 24 C -0.259 4.259 25 O -0.339 6.339 26 C -0.002 4.002 27 C -0.181 4.181 28 C -0.183 4.183 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.264 0.736 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.625 10.253 14.161 21.565 hybrid contribution 1.192 -0.036 -0.218 1.212 sum -11.433 10.217 13.943 20.725 Atomic orbital electron populations 1.21881 0.98419 0.98578 1.00873 1.21957 0.92436 0.99357 1.02769 1.19044 0.93527 0.88765 0.81972 0.92590 1.21180 0.89888 1.41401 1.05199 0.91739 1.24876 0.99096 0.94394 0.95141 1.69899 1.35803 1.36701 1.09392 0.86394 0.84472 0.78528 0.77533 1.20524 1.20959 1.19702 1.46476 1.14335 1.51402 1.19193 1.19510 0.84323 0.81740 0.87094 1.90755 1.56295 1.60019 1.33586 1.21124 0.81274 0.78759 0.89681 1.90727 1.55297 1.56877 1.34407 1.43226 1.18451 1.55567 1.12643 1.18073 0.92700 0.92207 0.87442 1.21067 1.01423 0.98505 0.95460 1.21104 0.93739 0.95714 0.95973 1.20299 0.94499 1.06960 0.98670 1.22331 0.88719 0.76405 0.84789 1.22248 1.01103 1.02111 1.00401 1.90481 1.18574 1.50648 1.74213 1.19719 0.96373 0.92364 0.91792 1.21156 0.90256 1.02083 1.04638 1.20621 0.93909 1.04899 0.98912 0.95334 0.94986 0.92664 0.88185 0.94435 0.92409 0.76369 0.73565 0.83570 0.84572 0.88514 0.89522 0.89498 0.90650 0.92052 0.88554 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.43 37.16 0.31 -2.57 16 2 C -0.13 -2.90 5.46 -26.73 -0.15 -3.05 16 3 C 0.27 6.37 2.26 -69.08 -0.16 6.21 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.66 8.69 -34.44 -0.30 -13.96 16 6 H 0.06 1.59 7.73 -52.49 -0.41 1.18 16 7 C 0.07 1.78 5.35 -17.82 -0.10 1.68 16 8 N -0.88 -23.66 11.44 55.43 0.63 -23.02 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 13 N -0.67 -13.38 4.95 -55.39 -0.27 -13.66 16 14 C 0.50 9.18 6.24 -11.63 -0.07 9.10 16 15 O -0.53 -10.65 13.60 5.49 0.07 -10.58 16 16 C 0.51 7.98 7.72 -11.63 -0.09 7.89 16 17 O -0.50 -8.38 13.93 5.49 0.08 -8.30 16 18 N -0.65 -8.32 5.29 -10.28 -0.05 -8.37 16 19 C 0.19 2.29 6.28 -83.78 -0.53 1.77 16 20 C -0.14 -1.68 8.61 -39.79 -0.34 -2.03 16 21 C -0.05 -0.44 9.32 -39.49 -0.37 -0.81 16 22 C -0.20 -2.04 5.87 -105.05 -0.62 -2.65 16 23 C 0.40 3.71 7.19 -30.82 -0.22 3.49 16 24 C -0.20 -1.16 9.77 36.01 0.35 -0.81 16 25 O -0.46 -5.44 13.99 5.54 0.08 -5.36 16 26 C 0.00 -0.02 5.89 -104.53 -0.62 -0.63 16 27 C -0.13 -1.17 8.78 36.01 0.32 -0.86 16 28 C -0.16 -1.71 9.52 -39.79 -0.38 -2.09 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.03 0.63 5.78 -51.93 -0.30 0.33 16 31 H 0.05 1.19 7.52 -51.93 -0.39 0.80 16 32 H 0.10 2.54 6.22 -51.93 -0.32 2.22 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.40 7.56 8.00 -40.82 -0.33 7.24 16 36 H 0.43 4.78 8.29 -40.82 -0.34 4.44 16 37 H 0.15 1.84 6.26 -52.48 -0.33 1.51 16 38 H 0.14 0.88 6.32 -52.49 -0.33 0.55 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.38 6.41 -51.93 -0.33 0.05 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 44 H 0.10 1.01 5.75 -51.93 -0.30 0.71 16 45 H 0.13 1.17 8.04 -52.48 -0.42 0.75 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -29.28 370.36 -7.71 -36.99 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.86 Total: 11.02 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.95 Total: 0.69 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.31 Total: -45.05 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.23 Total: -24.24 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.28 -7.71 -36.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128112315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.224 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds