Wall clock time and date at job start Tue Mar 31 2020 17:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 H 1.09005 * 109.46434 * 299.88514 * 3 2 1 5 5 C 1.50699 * 109.47421 * 179.88661 * 3 2 1 6 6 H 1.07996 * 119.99969 * 243.73063 * 5 3 2 7 7 C 1.37883 * 119.99848 * 63.73376 * 5 3 2 8 8 N 1.31515 * 119.99778 * 355.90038 * 7 5 3 9 9 Si 1.86801 * 119.99850 * 175.90268 * 7 5 3 10 10 H 1.48500 * 109.47023 * 94.99785 * 9 7 5 11 11 H 1.48495 * 109.46808 * 214.99294 * 9 7 5 12 12 H 1.48496 * 109.47252 * 334.99700 * 9 7 5 13 13 N 1.46493 * 109.47273 * 59.88396 * 3 2 1 14 14 C 1.34779 * 120.00236 * 275.00251 * 13 3 2 15 15 O 1.21362 * 119.99639 * 0.02562 * 14 13 3 16 16 C 1.49363 * 120.00310 * 179.97438 * 14 13 3 17 17 O 1.21361 * 120.00046 * 0.02562 * 16 14 13 18 18 N 1.34779 * 120.00445 * 180.27638 * 16 14 13 19 19 C 1.39146 * 120.00276 * 175.32389 * 18 16 14 20 20 C 1.39282 * 119.90403 * 35.75168 * 19 18 16 21 21 C 1.36587 * 120.09828 * 179.97438 * 20 19 18 22 22 C 1.40077 * 119.89882 * 359.97438 * 21 20 19 23 23 C 1.46857 * 120.09240 * 180.02562 * 22 21 20 24 24 C 1.50700 * 120.00382 * 1.22109 * 23 22 21 25 25 O 1.21296 * 120.00122 * 181.21505 * 23 22 21 26 26 C 1.40033 * 119.81320 * 0.02562 * 22 21 20 27 27 C 1.50707 * 120.05089 * 179.97438 * 26 22 21 28 28 C 1.36622 * 119.90025 * 359.71826 * 26 22 21 29 29 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47077 * 299.99949 * 1 2 3 31 31 H 1.08997 * 109.47662 * 60.00286 * 1 2 3 32 32 H 1.08997 * 109.47531 * 239.99775 * 2 1 3 33 33 H 1.08997 * 109.47662 * 119.99714 * 2 1 3 34 34 H 0.97005 * 119.99584 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00264 * 94.99858 * 13 3 2 36 36 H 0.97004 * 119.99324 * 355.32704 * 18 16 14 37 37 H 1.08004 * 119.95066 * 0.02562 * 20 19 18 38 38 H 1.07999 * 120.05302 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47207 * 89.99158 * 24 23 22 40 40 H 1.08998 * 109.47742 * 209.99967 * 24 23 22 41 41 H 1.09004 * 109.46677 * 329.99732 * 24 23 22 42 42 H 1.09002 * 109.46873 * 81.85632 * 27 26 22 43 43 H 1.09001 * 109.46730 * 201.85854 * 27 26 22 44 44 H 1.08996 * 109.46942 * 321.85706 * 27 26 22 45 45 H 1.08005 * 119.95369 * 180.29915 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6782 1.9557 -0.8911 5 6 3.5470 1.4426 0.0028 6 1 4.0853 1.8572 0.8422 7 6 4.2384 0.9135 -1.0664 8 7 3.5851 0.3364 -2.0512 9 14 6.1029 1.0164 -1.1160 10 1 6.6824 -0.2394 -0.5751 11 1 6.5510 1.2041 -2.5192 12 1 6.5573 2.1659 -0.2931 13 7 1.5494 2.1340 1.1947 14 6 0.3274 2.7025 1.1903 15 8 -0.3667 2.6412 0.1966 16 6 -0.1731 3.4070 2.4085 17 8 0.5209 3.4678 3.4023 18 7 -1.3973 3.9707 2.4060 19 6 -1.9028 4.5416 3.5699 20 6 -1.0473 5.2049 4.4463 21 6 -1.5393 5.7672 5.5896 22 6 -2.9067 5.6766 5.8799 23 6 -3.4404 6.2801 7.1077 24 6 -2.5215 7.0220 8.0438 25 8 -4.6209 6.1816 7.3684 26 6 -3.7633 5.0088 4.9960 27 6 -5.2352 4.9075 5.3033 28 6 -3.2635 4.4537 3.8520 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.0716 -0.0361 -2.8032 35 1 2.1040 2.1826 1.9891 36 1 -1.9259 3.9783 1.5927 37 1 0.0067 5.2754 4.2210 38 1 -0.8754 6.2817 6.2685 39 1 -2.4853 8.0737 7.7597 40 1 -2.8940 6.9339 9.0644 41 1 -1.5204 6.5950 7.9843 42 1 -5.7335 5.8288 5.0016 43 1 -5.6634 4.0671 4.7570 44 1 -5.3732 4.7535 6.3734 45 1 -3.9241 3.9427 3.1673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128112315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:44 Heat of formation + Delta-G solvation = -99.253071 kcal Electronic energy + Delta-G solvation = -27767.555489 eV Core-core repulsion = 23749.535208 eV Total energy + Delta-G solvation = -4018.020281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.27452 -41.18196 -40.13395 -38.94408 -37.22572 -36.14574 -34.32491 -33.91411 -32.83428 -32.09881 -30.12416 -29.20870 -27.91764 -26.60211 -24.99576 -23.97824 -23.04081 -21.70860 -21.20634 -20.88728 -20.14913 -18.46580 -18.18400 -17.77713 -17.40803 -17.20632 -16.95466 -16.56487 -16.13651 -16.02554 -15.53551 -15.36045 -15.10340 -15.02373 -14.65632 -14.45320 -14.22237 -13.93029 -13.82128 -13.52840 -13.32001 -13.17710 -13.10419 -12.99235 -12.97901 -12.85700 -12.73844 -12.64239 -12.22222 -12.14110 -12.11434 -11.65430 -11.47586 -11.07240 -10.71227 -10.60706 -10.39622 -9.91328 -9.85283 -9.35566 -8.19786 -6.35649 -0.56242 0.33152 0.35988 1.21621 1.43486 1.44858 1.47098 1.57114 2.13285 2.38901 2.67761 2.73235 3.11101 3.17073 3.46473 3.70619 3.77762 4.10750 4.16821 4.28406 4.35753 4.47681 4.52368 4.60641 4.67921 4.69743 4.72298 4.79350 4.84755 4.98774 5.00299 5.09573 5.16222 5.21689 5.26399 5.29448 5.34391 5.38491 5.53322 5.55038 5.66815 5.76071 5.82511 5.94271 6.08178 6.48111 6.60097 6.66846 6.75337 7.09123 7.36118 8.86130 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.002273 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.727936 B =12316.168866 C =13173.573054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.669 5.669 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.519 3.481 17 O -0.511 6.511 18 N -0.637 5.637 19 C 0.170 3.830 20 C -0.157 4.157 21 C -0.037 4.037 22 C -0.206 4.206 23 C 0.396 3.604 24 C -0.198 4.198 25 O -0.491 6.491 26 C -0.015 4.015 27 C -0.121 4.121 28 C -0.158 4.158 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.409 0.591 36 H 0.432 0.568 37 H 0.136 0.864 38 H 0.169 0.831 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.139 11.411 16.137 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.035 0.965 5 C -0.591 4.591 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.793 3.207 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.319 5.319 14 C 0.276 3.724 15 O -0.425 6.425 16 C 0.301 3.699 17 O -0.386 6.386 18 N -0.283 5.283 19 C 0.075 3.925 20 C -0.177 4.177 21 C -0.055 4.055 22 C -0.208 4.208 23 C 0.278 3.722 24 C -0.254 4.254 25 O -0.370 6.370 26 C -0.016 4.016 27 C -0.177 4.177 28 C -0.178 4.178 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.272 0.728 37 H 0.154 0.846 38 H 0.186 0.814 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.648 11.206 16.030 23.292 hybrid contribution 1.080 -0.254 -0.744 1.336 sum -11.569 10.952 15.286 22.078 Atomic orbital electron populations 1.21729 0.96552 0.99796 1.00375 1.21804 0.94040 0.98569 1.01533 1.18643 0.93004 0.89024 0.81943 0.96529 1.21507 0.90896 1.41211 1.05452 0.91247 1.25684 1.03382 0.94062 0.94845 1.70028 1.37391 1.37437 1.09926 0.85396 0.79271 0.78703 0.77377 1.19944 1.20996 1.19059 1.46226 1.15280 1.51974 1.18395 1.19937 0.83501 0.81084 0.87896 1.90744 1.56622 1.60408 1.34686 1.20350 0.82239 0.79099 0.88204 1.90730 1.55903 1.57668 1.34259 1.43024 1.17247 1.54592 1.13474 1.18231 0.93445 0.93478 0.87363 1.21124 1.00983 0.99278 0.96337 1.21372 0.93877 0.94762 0.95483 1.20603 0.94815 1.06421 0.98972 1.22799 0.88754 0.75861 0.84779 1.22284 1.00947 1.02637 0.99541 1.90482 1.19940 1.51807 1.74760 1.19979 0.97082 0.92527 0.91983 1.21112 0.89764 1.02760 1.04046 1.20750 0.93426 1.04486 0.99145 0.93220 0.94338 0.94172 0.90782 0.94124 0.92408 0.75558 0.72787 0.84616 0.81388 0.86697 0.89069 0.87695 0.90430 0.90727 0.89691 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.43 71.98 0.61 -4.61 16 2 C -0.12 -5.62 5.46 30.59 0.17 -5.45 16 3 C 0.28 13.44 2.26 44.25 0.10 13.54 16 4 H 0.02 0.94 7.58 -2.38 -0.02 0.93 16 5 C -0.55 -28.33 8.69 25.60 0.22 -28.11 16 6 H 0.07 3.40 7.73 -2.91 -0.02 3.38 16 7 C 0.02 1.11 5.35 84.66 0.45 1.56 16 8 N -0.91 -49.87 11.44 21.45 0.25 -49.63 16 9 Si 0.97 41.07 29.54 68.60 2.03 43.10 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.67 -27.15 4.95 -447.52 -2.21 -29.36 16 14 C 0.50 18.42 6.24 87.24 0.54 18.97 16 15 O -0.55 -22.21 13.60 -3.28 -0.04 -22.25 16 16 C 0.52 15.98 7.72 87.24 0.67 16.65 16 17 O -0.51 -16.73 13.93 -3.28 -0.05 -16.77 16 18 N -0.64 -15.66 5.29 -304.78 -1.61 -17.27 16 19 C 0.17 3.84 6.28 38.47 0.24 4.08 16 20 C -0.16 -3.43 8.61 22.13 0.19 -3.24 16 21 C -0.04 -0.60 9.32 22.33 0.21 -0.40 16 22 C -0.21 -3.75 5.87 -20.14 -0.12 -3.86 16 23 C 0.40 6.60 7.19 27.94 0.20 6.80 16 24 C -0.20 -1.67 9.77 71.24 0.70 -0.97 16 25 O -0.49 -10.99 13.99 -3.08 -0.04 -11.03 16 26 C -0.01 -0.29 5.89 -19.80 -0.12 -0.40 16 27 C -0.12 -2.11 8.78 71.24 0.63 -1.49 16 28 C -0.16 -3.07 9.52 22.13 0.21 -2.86 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.50 5.78 -2.39 -0.01 1.48 16 31 H 0.04 1.74 7.52 -2.39 -0.02 1.73 16 32 H 0.07 3.86 6.22 -2.39 -0.01 3.85 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 35 H 0.41 15.38 8.00 -92.71 -0.74 14.64 16 36 H 0.43 9.33 8.29 -92.71 -0.77 8.57 16 37 H 0.14 3.28 6.26 -2.91 -0.02 3.26 16 38 H 0.17 1.58 6.32 -2.91 -0.02 1.56 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.51 6.41 -2.38 -0.02 0.50 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.07 8.01 -2.39 -0.02 1.05 16 44 H 0.08 1.72 5.75 -2.39 -0.01 1.71 16 45 H 0.15 2.33 8.04 -2.91 -0.02 2.31 16 Total: -1.00 -63.70 370.36 2.76 -60.94 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.45 Total: 32.08 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.91 Total: 10.20 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.58 Total: -96.27 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.13 Total: -50.06 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -63.70 2.76 -60.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128112315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.315 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds