Wall clock time and date at job start Tue Mar 31 2020 17:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46876 * 2 1 4 4 O 1.21254 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.47187 * 119.99788 * 180.02562 * 3 2 1 6 6 C 1.39895 * 120.13618 * 359.72593 * 5 3 2 7 7 C 1.37921 * 119.97595 * 179.71894 * 6 5 3 8 8 C 1.38281 * 120.25822 * 0.55646 * 7 6 5 9 9 C 1.39049 * 120.27283 * 359.71845 * 8 7 6 10 10 N 1.39762 * 119.98978 * 180.02562 * 9 8 7 11 11 C 1.34771 * 119.99877 * 213.26609 * 10 9 8 12 12 O 1.21377 * 120.00015 * 4.86329 * 11 10 9 13 13 C 1.49353 * 120.00047 * 184.86256 * 11 10 9 14 14 O 1.21362 * 120.00312 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00198 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00099 * 180.02562 * 15 13 11 17 17 H 1.08995 * 109.47151 * 34.99417 * 16 15 13 18 18 C 1.50700 * 109.47188 * 154.99838 * 16 15 13 19 19 H 1.08000 * 119.99609 * 5.41325 * 18 16 15 20 20 C 1.37876 * 120.00281 * 185.40891 * 18 16 15 21 21 N 1.31525 * 119.99410 * 6.04477 * 20 18 16 22 22 Si 1.86794 * 120.00445 * 186.04289 * 20 18 16 23 23 H 1.48498 * 109.47038 * 94.99469 * 22 20 18 24 24 H 1.48500 * 109.47200 * 214.99481 * 22 20 18 25 25 H 1.48500 * 109.47092 * 334.99581 * 22 20 18 26 26 C 1.53004 * 109.46633 * 274.99852 * 16 15 13 27 27 C 1.52996 * 109.47051 * 65.50195 * 26 16 15 28 28 C 1.38624 * 120.01532 * 0.02562 * 9 8 7 29 29 H 1.08995 * 109.47320 * 59.99952 * 1 2 3 30 30 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47073 * 300.00153 * 1 2 3 32 32 H 1.08995 * 109.47320 * 120.00048 * 2 1 3 33 33 H 1.09001 * 109.46667 * 240.00693 * 2 1 3 34 34 H 1.08004 * 120.01030 * 0.02562 * 6 5 3 35 35 H 1.08008 * 119.86992 * 180.27498 * 7 6 5 36 36 H 1.08000 * 119.86039 * 179.74014 * 8 7 6 37 37 H 0.97003 * 119.99972 * 33.26625 * 10 9 8 38 38 H 0.97000 * 120.00012 * 359.97438 * 15 13 11 39 39 H 0.97001 * 119.99042 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46790 * 185.50186 * 26 16 15 41 41 H 1.09004 * 109.47329 * 305.49455 * 26 16 15 42 42 H 1.08992 * 109.47410 * 59.99792 * 27 26 16 43 43 H 1.09011 * 109.46609 * 179.97438 * 27 26 16 44 44 H 1.08998 * 109.46903 * 299.99036 * 27 26 16 45 45 H 1.08000 * 120.12264 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6287 0.0047 7 6 5.7462 0.8845 -0.0017 8 6 6.2094 2.1874 -0.0017 9 6 5.3127 3.2501 -0.0012 10 7 5.7874 4.5647 -0.0018 11 6 5.0989 5.5300 0.6389 12 8 4.1152 5.2437 1.2897 13 6 5.5462 6.9520 0.5479 14 8 6.5295 7.2384 -0.1032 15 7 4.8579 7.9174 1.1890 16 6 5.2964 9.3123 1.0994 17 1 5.7091 9.5005 0.1082 18 6 4.1205 10.2247 1.3355 19 1 3.1641 9.8106 1.6187 20 6 4.2657 11.5881 1.1902 21 7 5.3941 12.0840 0.7313 22 14 2.8598 12.7309 1.6450 23 1 3.0467 13.2163 3.0359 24 1 2.8421 13.8884 0.7150 25 1 1.5730 11.9964 1.5458 26 6 6.3692 9.5786 2.1573 27 6 7.6166 8.7522 1.8381 28 6 3.9482 3.0061 -0.0001 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 4.0336 -0.3905 0.0087 35 1 6.4485 0.0639 -0.0022 36 1 7.2721 2.3803 -0.0025 37 1 6.6124 4.7822 -0.4632 38 1 4.0718 7.6886 1.7092 39 1 5.4960 13.0432 0.6287 40 1 6.6252 10.6381 2.1564 41 1 5.9887 9.2977 3.1394 42 1 7.9970 9.0331 0.8561 43 1 8.3810 8.9423 2.5916 44 1 7.3605 7.6927 1.8391 45 1 3.2502 3.8302 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128526681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:55 Heat of formation + Delta-G solvation = -88.125448 kcal Electronic energy + Delta-G solvation = -27779.469475 eV Core-core repulsion = 23761.931725 eV Total energy + Delta-G solvation = -4017.537751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00472 -39.98532 -38.82677 -37.84774 -35.55169 -34.80282 -33.18309 -32.41662 -31.45208 -31.10870 -30.05393 -27.30701 -25.92672 -24.94622 -23.18773 -22.96149 -22.24009 -20.38247 -19.88168 -19.53735 -18.54970 -17.71678 -16.68405 -16.36960 -16.09633 -15.82546 -15.71333 -15.60349 -15.23803 -14.99599 -14.53077 -14.30149 -14.03795 -13.77737 -13.57983 -13.32537 -12.79123 -12.77838 -12.58867 -12.34866 -12.15388 -12.08823 -11.81596 -11.59658 -11.47692 -11.42641 -11.21681 -11.01577 -10.83943 -10.64566 -10.42550 -10.28528 -9.91022 -9.78646 -9.28760 -9.18816 -9.07564 -8.58387 -8.43080 -8.08510 -6.20479 -4.27541 0.38975 0.98517 1.77042 2.22065 2.58004 3.23631 3.31059 3.34417 3.47170 3.65279 3.72315 4.04783 4.32892 4.50422 4.62445 4.74028 4.78734 4.79228 4.94454 5.03482 5.13337 5.14374 5.20228 5.40564 5.50600 5.59377 5.61737 5.90534 5.96248 6.00328 6.06867 6.15373 6.24503 6.27708 6.46914 6.64837 6.87972 6.93297 7.07271 7.10821 7.21160 7.33911 7.42354 7.61712 7.68645 7.83906 7.96243 8.40090 8.59772 8.83766 9.38678 10.87360 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.002644 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.293995 B =10589.089809 C =12197.510849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.392 3.608 4 O -0.442 6.442 5 C -0.153 4.153 6 C -0.093 4.093 7 C -0.112 4.112 8 C -0.114 4.114 9 C 0.141 3.859 10 N -0.653 5.653 11 C 0.505 3.495 12 O -0.500 6.500 13 C 0.495 3.505 14 O -0.528 6.528 15 N -0.666 5.666 16 C 0.266 3.734 17 H 0.061 0.939 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.070 3.930 21 N -0.881 5.881 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.122 4.122 27 C -0.140 4.140 28 C -0.065 4.065 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.425 0.575 38 H 0.402 0.598 39 H 0.266 0.734 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -25.302 -1.776 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.268 3.732 4 O -0.316 6.316 5 C -0.154 4.154 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.135 4.135 9 C 0.046 3.954 10 N -0.301 5.301 11 C 0.288 3.712 12 O -0.373 6.373 13 C 0.274 3.726 14 O -0.407 6.407 15 N -0.315 5.315 16 C 0.165 3.835 17 H 0.079 0.921 18 C -0.577 4.577 19 H 0.083 0.917 20 C -0.134 4.134 21 N -0.518 5.518 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.161 4.161 27 C -0.197 4.197 28 C -0.086 4.086 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.263 0.737 38 H 0.237 0.763 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.142 -24.474 -1.807 24.541 hybrid contribution -0.431 0.611 0.306 0.808 sum -0.573 -23.863 -1.501 23.917 Atomic orbital electron populations 1.21609 0.93584 1.01783 1.03319 1.21973 0.98410 0.95545 1.04557 1.22539 0.87703 0.91341 0.71595 1.90569 1.58187 1.47753 1.35140 1.20395 0.95201 0.93620 1.06220 1.21379 0.92930 0.98491 0.98420 1.20903 0.95506 0.96085 1.00564 1.21206 0.99607 0.91845 1.00817 1.17697 0.92764 0.83955 1.00945 1.43270 1.28106 1.05533 1.53161 1.21106 0.83471 0.87814 0.78782 1.90774 1.25215 1.83130 1.38168 1.19534 0.85153 0.85252 0.82691 1.90747 1.25937 1.82502 1.41512 1.46475 1.28924 1.08973 1.47086 1.19044 0.93804 0.73447 0.97178 0.92115 1.21186 0.96024 0.91341 1.49140 0.91722 1.24879 0.96242 0.97999 0.94325 1.69965 1.25095 1.13186 1.43522 0.86423 0.82120 0.80199 0.78384 1.20464 1.21050 1.19668 1.21886 0.94419 1.01623 0.98195 1.21860 0.98089 0.99419 1.00338 1.21510 0.94472 0.97288 0.95293 0.92037 0.92020 0.91989 0.88299 0.88314 0.84964 0.84849 0.84874 0.73706 0.76343 0.92456 0.89387 0.94391 0.92777 0.95384 0.94410 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.20 37.16 0.34 -0.75 16 2 C -0.17 -1.14 5.03 -27.88 -0.14 -1.28 16 3 C 0.39 4.39 7.12 -30.67 -0.22 4.18 16 4 O -0.44 -6.78 15.97 5.58 0.09 -6.69 16 5 C -0.15 -1.70 5.87 -105.09 -0.62 -2.32 16 6 C -0.09 -0.72 9.47 -39.08 -0.37 -1.09 16 7 C -0.11 -0.82 10.02 -39.68 -0.40 -1.22 16 8 C -0.11 -1.04 9.95 -39.27 -0.39 -1.43 16 9 C 0.14 1.75 6.27 -83.80 -0.53 1.23 16 10 N -0.65 -8.83 5.32 -10.33 -0.06 -8.89 16 11 C 0.51 8.59 7.63 -11.63 -0.09 8.50 16 12 O -0.50 -9.38 14.13 5.47 0.08 -9.30 16 13 C 0.50 9.68 6.48 -11.63 -0.08 9.60 16 14 O -0.53 -11.04 13.62 5.49 0.07 -10.97 16 15 N -0.67 -14.09 5.02 -55.39 -0.28 -14.36 16 16 C 0.27 6.53 2.11 -69.08 -0.15 6.39 16 17 H 0.06 1.70 7.55 -51.93 -0.39 1.31 16 18 C -0.54 -14.13 8.67 -34.44 -0.30 -14.43 16 19 H 0.06 1.66 7.72 -52.49 -0.41 1.25 16 20 C 0.07 1.85 5.21 -17.82 -0.09 1.76 16 21 N -0.88 -24.34 11.99 55.43 0.66 -23.67 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.12 -2.84 5.49 -26.73 -0.15 -2.99 16 27 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 28 C -0.07 -0.91 8.20 -38.88 -0.32 -1.23 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.13 0.58 7.04 -52.48 -0.37 0.21 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.42 4.93 8.29 -40.82 -0.34 4.60 16 38 H 0.40 8.07 7.99 -40.82 -0.33 7.74 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.09 2.24 6.65 -51.93 -0.35 1.90 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.19 7.87 -51.93 -0.41 0.78 16 43 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 44 H 0.04 0.76 5.63 -51.93 -0.29 0.47 16 45 H 0.15 2.48 5.98 -52.49 -0.31 2.17 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -31.59 378.13 -8.04 -39.63 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.12 Total: 10.64 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.17 Total: 2.32 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.33 Total: -46.93 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.24 Total: -26.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.59 -8.04 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128526681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.496 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds