Wall clock time and date at job start Tue Mar 31 2020 17:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46876 * 2 1 4 4 O 1.21254 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.47187 * 119.99788 * 180.02562 * 3 2 1 6 6 C 1.39895 * 120.13618 * 359.72593 * 5 3 2 7 7 C 1.37921 * 119.97595 * 179.71894 * 6 5 3 8 8 C 1.38281 * 120.25822 * 0.55646 * 7 6 5 9 9 C 1.39049 * 120.27283 * 359.71845 * 8 7 6 10 10 N 1.39762 * 119.98978 * 180.02562 * 9 8 7 11 11 C 1.34771 * 119.99877 * 213.26609 * 10 9 8 12 12 O 1.21377 * 120.00015 * 4.86329 * 11 10 9 13 13 C 1.49353 * 120.00047 * 184.86256 * 11 10 9 14 14 O 1.21362 * 120.00312 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00198 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00099 * 180.02562 * 15 13 11 17 17 H 1.08995 * 109.47151 * 34.99417 * 16 15 13 18 18 C 1.50700 * 109.47188 * 154.99838 * 16 15 13 19 19 H 1.08000 * 119.99609 * 5.41325 * 18 16 15 20 20 C 1.37876 * 120.00281 * 185.40891 * 18 16 15 21 21 N 1.31525 * 119.99410 * 6.04477 * 20 18 16 22 22 Si 1.86794 * 120.00445 * 186.04289 * 20 18 16 23 23 H 1.48498 * 109.47038 * 94.99469 * 22 20 18 24 24 H 1.48500 * 109.47200 * 214.99481 * 22 20 18 25 25 H 1.48500 * 109.47092 * 334.99581 * 22 20 18 26 26 C 1.53004 * 109.46633 * 274.99852 * 16 15 13 27 27 C 1.52996 * 109.47051 * 65.50195 * 26 16 15 28 28 C 1.38624 * 120.01532 * 0.02562 * 9 8 7 29 29 H 1.08995 * 109.47320 * 59.99952 * 1 2 3 30 30 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47073 * 300.00153 * 1 2 3 32 32 H 1.08995 * 109.47320 * 120.00048 * 2 1 3 33 33 H 1.09001 * 109.46667 * 240.00693 * 2 1 3 34 34 H 1.08004 * 120.01030 * 0.02562 * 6 5 3 35 35 H 1.08008 * 119.86992 * 180.27498 * 7 6 5 36 36 H 1.08000 * 119.86039 * 179.74014 * 8 7 6 37 37 H 0.97003 * 119.99972 * 33.26625 * 10 9 8 38 38 H 0.97000 * 120.00012 * 359.97438 * 15 13 11 39 39 H 0.97001 * 119.99042 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46790 * 185.50186 * 26 16 15 41 41 H 1.09004 * 109.47329 * 305.49455 * 26 16 15 42 42 H 1.08992 * 109.47410 * 59.99792 * 27 26 16 43 43 H 1.09011 * 109.46609 * 179.97438 * 27 26 16 44 44 H 1.08998 * 109.46903 * 299.99036 * 27 26 16 45 45 H 1.08000 * 120.12264 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6287 0.0047 7 6 5.7462 0.8845 -0.0017 8 6 6.2094 2.1874 -0.0017 9 6 5.3127 3.2501 -0.0012 10 7 5.7874 4.5647 -0.0018 11 6 5.0989 5.5300 0.6389 12 8 4.1152 5.2437 1.2897 13 6 5.5462 6.9520 0.5479 14 8 6.5295 7.2384 -0.1032 15 7 4.8579 7.9174 1.1890 16 6 5.2964 9.3123 1.0994 17 1 5.7091 9.5005 0.1082 18 6 4.1205 10.2247 1.3355 19 1 3.1641 9.8106 1.6187 20 6 4.2657 11.5881 1.1902 21 7 5.3941 12.0840 0.7313 22 14 2.8598 12.7309 1.6450 23 1 3.0467 13.2163 3.0359 24 1 2.8421 13.8884 0.7150 25 1 1.5730 11.9964 1.5458 26 6 6.3692 9.5786 2.1573 27 6 7.6166 8.7522 1.8381 28 6 3.9482 3.0061 -0.0001 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 4.0336 -0.3905 0.0087 35 1 6.4485 0.0639 -0.0022 36 1 7.2721 2.3803 -0.0025 37 1 6.6124 4.7822 -0.4632 38 1 4.0718 7.6886 1.7092 39 1 5.4960 13.0432 0.6287 40 1 6.6252 10.6381 2.1564 41 1 5.9887 9.2977 3.1394 42 1 7.9970 9.0331 0.8561 43 1 8.3810 8.9423 2.5916 44 1 7.3605 7.6927 1.8391 45 1 3.2502 3.8302 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128526681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:54 Heat of formation + Delta-G solvation = -109.668832 kcal Electronic energy + Delta-G solvation = -27780.403667 eV Core-core repulsion = 23761.931725 eV Total energy + Delta-G solvation = -4018.471942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21942 -41.04422 -40.13030 -38.98579 -37.24476 -36.05726 -34.35538 -33.84382 -32.92782 -32.20052 -30.97382 -29.20193 -26.78974 -26.29605 -24.88646 -23.71322 -23.36653 -21.87998 -21.24820 -20.79709 -19.96164 -18.71542 -18.21972 -17.72672 -17.37313 -16.96883 -16.93520 -16.66636 -16.44290 -16.26080 -15.94377 -15.63445 -15.10528 -15.05481 -14.67315 -14.56867 -14.34394 -13.95853 -13.66403 -13.49940 -13.32448 -13.16782 -13.11713 -12.96768 -12.84347 -12.71137 -12.63845 -12.34066 -12.19663 -12.15662 -12.01990 -11.68064 -11.62275 -11.16939 -10.74081 -10.67711 -10.59856 -10.02368 -9.90632 -9.33931 -8.25028 -6.39169 -0.40466 -0.02570 0.56790 1.25267 1.41563 1.42069 1.43417 1.53789 2.10429 2.36268 2.65815 2.78951 3.00852 3.06925 3.44463 3.84391 3.95388 4.06991 4.18723 4.26691 4.29310 4.39536 4.43215 4.45385 4.49373 4.65127 4.75490 4.93387 4.98423 4.99350 5.06327 5.14170 5.17036 5.19458 5.28730 5.29598 5.34096 5.35231 5.37022 5.51851 5.62667 5.71021 5.86055 5.94093 5.98175 6.49999 6.55555 6.63516 6.73407 7.03673 7.31893 8.83077 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.002644 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.293995 B =10589.089809 C =12197.510849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.159 4.159 3 C 0.386 3.614 4 O -0.503 6.503 5 C -0.173 4.173 6 C -0.068 4.068 7 C -0.101 4.101 8 C -0.102 4.102 9 C 0.108 3.892 10 N -0.635 5.635 11 C 0.511 3.489 12 O -0.524 6.524 13 C 0.497 3.503 14 O -0.542 6.542 15 N -0.672 5.672 16 C 0.275 3.725 17 H 0.020 0.980 18 C -0.556 4.556 19 H 0.065 0.935 20 C 0.024 3.976 21 N -0.910 5.910 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.116 4.116 27 C -0.127 4.127 28 C -0.098 4.098 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.161 0.839 37 H 0.433 0.567 38 H 0.407 0.593 39 H 0.268 0.732 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 -29.438 -1.378 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.267 3.733 4 O -0.381 6.381 5 C -0.175 4.175 6 C -0.086 4.086 7 C -0.119 4.119 8 C -0.121 4.121 9 C 0.015 3.985 10 N -0.283 5.283 11 C 0.294 3.706 12 O -0.399 6.399 13 C 0.276 3.724 14 O -0.422 6.422 15 N -0.321 5.321 16 C 0.172 3.828 17 H 0.037 0.963 18 C -0.594 4.594 19 H 0.083 0.917 20 C -0.178 4.178 21 N -0.548 5.548 22 Si 0.791 3.209 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.194 1.194 26 C -0.155 4.155 27 C -0.185 4.185 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.197 0.803 35 H 0.198 0.802 36 H 0.178 0.822 37 H 0.273 0.727 38 H 0.242 0.758 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.009 -28.677 -1.427 28.730 hybrid contribution -0.723 1.725 0.107 1.873 sum 0.286 -26.952 -1.320 26.986 Atomic orbital electron populations 1.21639 0.94565 1.02935 1.01454 1.22073 0.97552 0.92456 1.07450 1.23398 0.87593 0.92937 0.69378 1.90554 1.59439 1.49898 1.38249 1.20612 0.96041 0.93476 1.07351 1.21914 0.92576 0.99383 0.94748 1.21498 0.96111 0.96313 0.98015 1.21606 1.00361 0.91600 0.98583 1.17925 0.92911 0.83798 1.03834 1.43073 1.27600 1.05743 1.51844 1.20445 0.83596 0.87088 0.79513 1.90777 1.26258 1.83146 1.39725 1.19936 0.84503 0.86305 0.81607 1.90727 1.26495 1.83176 1.41763 1.46273 1.29529 1.08259 1.48029 1.18674 0.93699 0.75055 0.95345 0.96257 1.21499 0.96589 0.92127 1.49203 0.91660 1.25676 0.98583 0.99419 0.94082 1.70080 1.26867 1.13544 1.44284 0.85416 0.79118 0.78058 0.78293 1.19592 1.20785 1.19367 1.21738 0.95160 1.00513 0.98074 1.21713 0.97507 0.99105 1.00128 1.21349 0.94657 0.97705 0.98160 0.93880 0.89152 0.94097 0.85168 0.84882 0.80329 0.80199 0.82183 0.72708 0.75818 0.92309 0.91824 0.93625 0.94450 0.92828 0.93883 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.20 71.98 0.66 -1.38 16 2 C -0.16 -1.67 5.03 29.85 0.15 -1.52 16 3 C 0.39 8.59 7.12 28.04 0.20 8.79 16 4 O -0.50 -16.72 15.97 -2.95 -0.05 -16.77 16 5 C -0.17 -3.67 5.87 -20.17 -0.12 -3.79 16 6 C -0.07 -0.72 9.47 22.60 0.21 -0.51 16 7 C -0.10 -0.91 10.02 22.20 0.22 -0.69 16 8 C -0.10 -1.49 9.95 22.47 0.22 -1.26 16 9 C 0.11 2.65 6.27 38.16 0.24 2.89 16 10 N -0.63 -17.44 5.32 -304.95 -1.62 -19.06 16 11 C 0.51 18.22 7.63 87.24 0.67 18.88 16 12 O -0.52 -20.96 14.13 -3.33 -0.05 -21.01 16 13 C 0.50 20.26 6.48 87.24 0.57 20.83 16 14 O -0.54 -23.47 13.62 -3.28 -0.04 -23.51 16 15 N -0.67 -29.81 5.02 -447.52 -2.25 -32.06 16 16 C 0.27 14.09 2.11 44.25 0.09 14.19 16 17 H 0.02 1.16 7.55 -2.39 -0.02 1.14 16 18 C -0.56 -30.16 8.67 25.60 0.22 -29.94 16 19 H 0.07 3.45 7.72 -2.91 -0.02 3.42 16 20 C 0.02 1.28 5.21 84.65 0.44 1.72 16 21 N -0.91 -51.79 11.99 21.45 0.26 -51.53 16 22 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.12 -5.54 5.49 30.59 0.17 -5.37 16 27 C -0.13 -5.35 8.52 71.98 0.61 -4.74 16 28 C -0.10 -2.84 8.20 22.72 0.19 -2.66 16 29 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.72 8.10 -2.38 -0.02 0.70 16 32 H 0.13 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.13 0.55 8.09 -2.39 -0.02 0.53 16 34 H 0.18 0.25 7.04 -2.91 -0.02 0.23 16 35 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.43 9.98 8.29 -92.71 -0.77 9.21 16 38 H 0.41 17.22 7.99 -92.71 -0.74 16.48 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.06 3.35 6.65 -2.39 -0.02 3.34 16 41 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 43 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.04 1.74 5.63 -2.39 -0.01 1.72 16 45 H 0.10 3.87 5.98 -2.91 -0.02 3.85 16 Total: -1.00 -76.29 378.13 2.55 -73.73 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.47 Total: 29.77 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 4.75 Total: 15.44 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.61 Total: -102.65 kcal Atomic # 8 Polarization: -61.15 SS G_CDS: -0.14 Total: -61.29 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.29 2.55 -73.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128526681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.936 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds