Wall clock time and date at job start Tue Mar 31 2020 16:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.53000 * 109.46638 * 240.00449 * 2 1 3 5 5 C 1.50698 * 109.47463 * 120.00229 * 2 1 3 6 6 O 1.21281 * 119.99732 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99967 * 180.02562 * 5 2 1 8 8 N 1.40101 * 119.99672 * 180.02562 * 7 5 2 9 9 C 1.34783 * 119.99678 * 179.97438 * 8 7 5 10 10 O 1.21715 * 120.00192 * 359.97438 * 9 8 7 11 11 C 1.46258 * 119.99634 * 179.97438 * 9 8 7 12 12 C 1.35023 * 119.99773 * 179.97438 * 11 9 8 13 13 C 1.46957 * 119.99860 * 179.97438 * 12 11 9 14 14 C 1.40027 * 120.10332 * 359.72219 * 13 12 11 15 15 C 1.37602 * 119.89512 * 179.76549 * 14 13 12 16 16 C 1.39167 * 120.10113 * 0.51272 * 15 14 13 17 17 O 1.35576 * 119.89657 * 179.76773 * 16 15 14 18 18 C 1.34777 * 117.00171 * 174.42353 * 17 16 15 19 19 H 1.08007 * 120.00056 * 5.04838 * 18 17 16 20 20 C 1.38719 * 120.00264 * 185.05192 * 18 17 16 21 21 N 1.31505 * 119.99488 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00150 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47360 * 60.00115 * 22 20 18 24 24 H 1.48499 * 109.47271 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47288 * 299.99844 * 22 20 18 26 26 C 1.39178 * 120.20672 * 359.73906 * 16 15 14 27 27 C 1.37591 * 120.10050 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47054 * 299.99799 * 1 2 3 29 29 H 1.08993 * 109.47774 * 59.99375 * 1 2 3 30 30 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47469 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47037 * 300.00357 * 3 2 1 33 33 H 1.09003 * 109.47041 * 60.00193 * 3 2 1 34 34 H 1.08997 * 109.46877 * 299.99089 * 4 2 1 35 35 H 1.08997 * 109.47709 * 60.00021 * 4 2 1 36 36 H 1.09007 * 109.46918 * 180.02562 * 4 2 1 37 37 H 0.96997 * 119.99846 * 359.97438 * 7 5 2 38 38 H 0.96997 * 120.00481 * 359.97438 * 8 7 5 39 39 H 1.07997 * 120.00284 * 0.26883 * 11 9 8 40 40 H 1.07997 * 119.99791 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.04831 * 0.02562 * 14 13 12 42 42 H 1.08003 * 119.94371 * 180.23110 * 15 14 13 43 43 H 0.97008 * 119.99352 * 179.97438 * 21 20 18 44 44 H 1.07997 * 119.94862 * 179.97438 * 26 16 15 45 45 H 1.07998 * 120.05324 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0289 7 7 3.3575 -0.8331 1.4438 8 7 3.8245 -1.4940 2.5875 9 6 5.1497 -1.6171 2.8007 10 8 5.9406 -1.1545 1.9995 11 6 5.6372 -2.3067 3.9948 12 6 6.9647 -2.4305 4.2082 13 6 7.4546 -3.1228 5.4083 14 6 6.5466 -3.6498 6.3350 15 6 7.0100 -4.3014 7.4548 16 6 8.3787 -4.4278 7.6725 17 8 8.8307 -5.0665 8.7797 18 6 10.1614 -5.2574 8.8757 19 1 10.8224 -4.8360 8.1326 20 6 10.6822 -5.9949 9.9288 21 7 9.8775 -6.5075 10.8338 22 14 12.5266 -6.2600 10.0613 23 1 13.2089 -4.9456 10.1719 24 1 12.8241 -7.0756 11.2661 25 1 13.0129 -6.9699 8.8511 26 6 9.2849 -3.9010 6.7570 27 6 8.8309 -3.2520 5.6320 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2492 37 1 3.9877 -0.4644 0.8053 38 1 3.1943 -1.8630 3.2258 39 1 4.9354 -2.7209 4.7035 40 1 7.6664 -2.0207 3.4969 41 1 5.4843 -3.5486 6.1688 42 1 6.3103 -4.7115 8.1681 43 1 10.2417 -7.0236 11.5700 44 1 10.3462 -4.0011 6.9303 45 1 9.5348 -2.8439 4.9218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130797456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:33 Heat of formation + Delta-G solvation = -39.874448 kcal Electronic energy + Delta-G solvation = -26326.187449 eV Core-core repulsion = 22310.742019 eV Total energy + Delta-G solvation = -4015.445430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.83124 -39.46178 -39.11834 -36.97624 -36.18962 -35.50171 -33.33369 -32.39971 -31.33505 -30.46799 -28.24193 -27.87683 -27.53770 -25.74600 -24.24028 -22.92605 -22.22159 -21.42172 -20.32946 -19.07144 -18.15971 -18.10596 -17.40481 -17.07375 -16.48407 -15.82869 -15.29727 -14.86791 -14.84356 -14.80797 -14.49941 -14.36379 -14.18143 -13.89533 -13.85094 -13.53763 -13.08561 -12.89712 -12.74922 -12.64583 -12.46182 -12.20040 -11.99852 -11.85779 -11.78465 -11.54244 -11.45123 -11.41772 -11.15412 -11.13323 -10.75490 -10.58408 -10.37698 -10.02381 -9.69281 -9.54423 -8.93025 -8.53912 -8.42404 -7.17086 -6.68906 -4.23470 0.93361 1.65803 2.10232 2.12666 2.49353 3.01814 3.03157 3.06064 3.42323 3.72378 3.79291 4.18816 4.27038 4.33721 4.46363 4.64511 4.88452 4.91683 4.99996 5.04287 5.10962 5.19633 5.21008 5.31223 5.39455 5.41571 5.48185 5.51566 5.59877 5.61522 5.70113 5.83440 5.96631 6.05260 6.24722 6.40839 6.47179 6.53304 6.62562 6.73995 6.87749 7.08296 7.18615 7.23220 7.37747 7.59460 7.67435 7.76112 8.23763 8.75456 9.41850 10.47343 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.040050 B = 0.001580 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.962959 B =17713.626069 C =18212.683541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.145 4.145 5 C 0.520 3.480 6 O -0.539 6.539 7 N -0.520 5.520 8 N -0.528 5.528 9 C 0.560 3.440 10 O -0.561 6.561 11 C -0.283 4.283 12 C 0.052 3.948 13 C -0.204 4.204 14 C -0.040 4.040 15 C -0.200 4.200 16 C 0.168 3.832 17 O -0.160 6.160 18 C -0.394 4.394 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.850 5.850 22 Si 0.946 3.054 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.243 4.243 27 C -0.032 4.032 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.430 0.570 38 H 0.432 0.568 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.132 0.868 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 11.684 -19.746 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.203 4.203 5 C 0.306 3.694 6 O -0.414 6.414 7 N -0.267 5.267 8 N -0.276 5.276 9 C 0.353 3.647 10 O -0.440 6.440 11 C -0.305 4.305 12 C 0.032 3.968 13 C -0.205 4.205 14 C -0.059 4.059 15 C -0.219 4.219 16 C 0.111 3.889 17 O -0.060 6.060 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.482 5.482 22 Si 0.769 3.231 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.262 4.262 27 C -0.050 4.050 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.272 0.728 38 H 0.274 0.726 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.623 11.410 -19.263 25.702 hybrid contribution 0.933 -0.169 0.146 0.960 sum -11.689 11.240 -19.117 25.069 Atomic orbital electron populations 1.21688 0.91224 1.03199 1.02441 1.20767 0.98341 0.96340 0.92388 1.21943 1.01483 0.93452 1.03413 1.21944 1.01483 1.00887 0.95979 1.20911 0.80221 0.80160 0.88149 1.90726 1.54776 1.48993 1.46954 1.44923 1.07170 1.56487 1.18105 1.44949 1.07454 1.57556 1.17680 1.18616 0.79638 0.79459 0.86972 1.90787 1.54773 1.50721 1.47743 1.22105 0.97126 1.11873 0.99398 1.22276 0.94711 0.87126 0.92645 1.18414 0.93436 1.10841 0.97809 1.20903 0.98286 0.94260 0.92419 1.20159 0.92923 1.08199 1.00601 1.19625 0.92815 0.90278 0.86179 1.83902 1.26139 1.62881 1.33108 1.21451 0.79083 1.34364 1.12029 0.88511 1.25409 1.01000 0.95266 0.94763 1.70006 1.35808 1.30697 1.11692 0.85702 0.79766 0.79069 0.78537 1.19218 1.20046 1.19215 1.21095 1.00493 1.07265 0.97376 1.20984 0.93923 0.94550 0.95557 0.91677 0.91553 0.91673 0.91896 0.90796 0.91682 0.91687 0.90789 0.91898 0.72801 0.72625 0.85347 0.85738 0.86290 0.86051 0.91469 0.85076 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 7.76 37.16 0.29 -0.54 16 2 C -0.07 -0.49 0.87 -155.66 -0.14 -0.62 16 3 C -0.15 -0.75 8.37 37.16 0.31 -0.43 16 4 C -0.15 -0.75 8.37 37.16 0.31 -0.44 16 5 C 0.52 5.23 6.60 -10.99 -0.07 5.16 16 6 O -0.54 -7.19 15.82 5.56 0.09 -7.10 16 7 N -0.52 -5.31 6.05 31.22 0.19 -5.12 16 8 N -0.53 -6.09 6.26 30.16 0.19 -5.90 16 9 C 0.56 7.51 7.85 -13.04 -0.10 7.41 16 10 O -0.56 -8.90 16.07 5.18 0.08 -8.82 16 11 C -0.28 -3.67 9.41 -37.50 -0.35 -4.02 16 12 C 0.05 0.75 9.45 -37.19 -0.35 0.40 16 13 C -0.20 -3.34 5.87 -105.02 -0.62 -3.96 16 14 C -0.04 -0.67 9.40 -39.14 -0.37 -1.04 16 15 C -0.20 -3.92 9.97 -39.47 -0.39 -4.31 16 16 C 0.17 3.79 6.66 -38.89 -0.26 3.53 16 17 O -0.16 -4.28 9.74 0.73 0.01 -4.27 16 18 C -0.39 -10.32 9.48 30.91 0.29 -10.02 16 19 H 0.10 2.31 5.18 -52.48 -0.27 2.04 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.85 -23.52 13.67 55.48 0.76 -22.76 16 22 Si 0.95 19.24 29.55 -169.99 -5.02 14.21 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 C -0.24 -4.90 9.14 -39.47 -0.36 -5.26 16 27 C -0.03 -0.54 9.78 -39.15 -0.38 -0.93 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.30 7.57 -51.92 -0.39 -0.09 16 37 H 0.43 3.92 6.83 -182.60 -1.25 2.67 16 38 H 0.43 4.57 7.98 -182.60 -1.46 3.12 16 39 H 0.13 1.44 6.07 -52.49 -0.32 1.12 16 40 H 0.12 1.73 7.52 -52.49 -0.39 1.34 16 41 H 0.12 1.60 6.16 -52.49 -0.32 1.28 16 42 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.13 2.61 5.62 -52.49 -0.29 2.32 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -31.66 384.78 -8.23 -39.88 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.03 Total: 8.14 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.29 Total: -14.08 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 1.14 Total: -33.78 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.18 Total: -20.19 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.66 -8.23 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130797456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.009 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds