Wall clock time and date at job start Tue Mar 31 2020 16:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.53000 * 109.46638 * 240.00449 * 2 1 3 5 5 C 1.50698 * 109.47463 * 120.00229 * 2 1 3 6 6 O 1.21281 * 119.99732 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99967 * 180.02562 * 5 2 1 8 8 N 1.40101 * 119.99672 * 180.02562 * 7 5 2 9 9 C 1.34783 * 119.99678 * 179.97438 * 8 7 5 10 10 O 1.21715 * 120.00192 * 359.97438 * 9 8 7 11 11 C 1.46258 * 119.99634 * 179.97438 * 9 8 7 12 12 C 1.35023 * 119.99773 * 179.97438 * 11 9 8 13 13 C 1.46957 * 119.99860 * 179.97438 * 12 11 9 14 14 C 1.40027 * 120.10332 * 359.72219 * 13 12 11 15 15 C 1.37602 * 119.89512 * 179.76549 * 14 13 12 16 16 C 1.39167 * 120.10113 * 0.51272 * 15 14 13 17 17 O 1.35576 * 119.89657 * 179.76773 * 16 15 14 18 18 C 1.34777 * 117.00171 * 174.42353 * 17 16 15 19 19 H 1.08007 * 120.00056 * 5.04838 * 18 17 16 20 20 C 1.38719 * 120.00264 * 185.05192 * 18 17 16 21 21 N 1.31505 * 119.99488 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00150 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47360 * 60.00115 * 22 20 18 24 24 H 1.48499 * 109.47271 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47288 * 299.99844 * 22 20 18 26 26 C 1.39178 * 120.20672 * 359.73906 * 16 15 14 27 27 C 1.37591 * 120.10050 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47054 * 299.99799 * 1 2 3 29 29 H 1.08993 * 109.47774 * 59.99375 * 1 2 3 30 30 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47469 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47037 * 300.00357 * 3 2 1 33 33 H 1.09003 * 109.47041 * 60.00193 * 3 2 1 34 34 H 1.08997 * 109.46877 * 299.99089 * 4 2 1 35 35 H 1.08997 * 109.47709 * 60.00021 * 4 2 1 36 36 H 1.09007 * 109.46918 * 180.02562 * 4 2 1 37 37 H 0.96997 * 119.99846 * 359.97438 * 7 5 2 38 38 H 0.96997 * 120.00481 * 359.97438 * 8 7 5 39 39 H 1.07997 * 120.00284 * 0.26883 * 11 9 8 40 40 H 1.07997 * 119.99791 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.04831 * 0.02562 * 14 13 12 42 42 H 1.08003 * 119.94371 * 180.23110 * 15 14 13 43 43 H 0.97008 * 119.99352 * 179.97438 * 21 20 18 44 44 H 1.07997 * 119.94862 * 179.97438 * 26 16 15 45 45 H 1.07998 * 120.05324 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0289 7 7 3.3575 -0.8331 1.4438 8 7 3.8245 -1.4940 2.5875 9 6 5.1497 -1.6171 2.8007 10 8 5.9406 -1.1545 1.9995 11 6 5.6372 -2.3067 3.9948 12 6 6.9647 -2.4305 4.2082 13 6 7.4546 -3.1228 5.4083 14 6 6.5466 -3.6498 6.3350 15 6 7.0100 -4.3014 7.4548 16 6 8.3787 -4.4278 7.6725 17 8 8.8307 -5.0665 8.7797 18 6 10.1614 -5.2574 8.8757 19 1 10.8224 -4.8360 8.1326 20 6 10.6822 -5.9949 9.9288 21 7 9.8775 -6.5075 10.8338 22 14 12.5266 -6.2600 10.0613 23 1 13.2089 -4.9456 10.1719 24 1 12.8241 -7.0756 11.2661 25 1 13.0129 -6.9699 8.8511 26 6 9.2849 -3.9010 6.7570 27 6 8.8309 -3.2520 5.6320 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2492 37 1 3.9877 -0.4644 0.8053 38 1 3.1943 -1.8630 3.2258 39 1 4.9354 -2.7209 4.7035 40 1 7.6664 -2.0207 3.4969 41 1 5.4843 -3.5486 6.1688 42 1 6.3103 -4.7115 8.1681 43 1 10.2417 -7.0236 11.5700 44 1 10.3462 -4.0011 6.9303 45 1 9.5348 -2.8439 4.9218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130797456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:33 Heat of formation + Delta-G solvation = -60.466934 kcal Electronic energy + Delta-G solvation = -26327.080406 eV Core-core repulsion = 22310.742019 eV Total energy + Delta-G solvation = -4016.338388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70357 -40.87224 -40.34084 -38.52298 -36.85186 -36.47060 -34.78274 -34.06228 -32.34926 -31.95941 -29.61629 -28.26300 -28.05278 -27.50858 -25.30721 -24.00864 -23.64180 -22.59050 -21.42768 -20.31420 -19.56937 -19.13169 -18.72779 -18.34382 -17.39472 -16.68344 -16.51867 -16.39362 -15.99123 -15.92389 -15.76845 -15.61499 -15.36746 -14.98858 -14.81748 -14.61543 -14.53408 -14.11910 -13.60648 -13.39568 -13.33765 -13.20162 -13.11058 -12.96439 -12.68879 -12.64839 -12.60448 -12.48199 -12.25151 -12.14885 -11.95492 -11.91784 -11.41149 -11.21784 -11.13371 -10.95217 -10.59823 -9.89399 -9.52110 -8.69481 -8.52300 -6.18607 -0.32081 0.58848 0.77770 1.02915 1.36128 1.39817 1.48460 1.51993 2.15474 2.25008 2.85657 2.92707 3.17244 3.40681 3.43619 3.73319 3.81289 3.86278 3.93974 4.08454 4.16532 4.27047 4.32280 4.47131 4.64339 4.69328 4.69419 4.80607 4.92134 4.93436 4.93959 4.96851 4.99972 5.15650 5.19889 5.21239 5.30435 5.31953 5.33246 5.52453 5.54637 5.63343 5.72964 5.79922 5.96881 6.10059 6.43265 6.77796 6.91855 7.25880 7.68742 8.69409 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.040050 B = 0.001580 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.962959 B =17713.626069 C =18212.683541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.144 4.144 4 C -0.144 4.144 5 C 0.518 3.482 6 O -0.574 6.574 7 N -0.517 5.517 8 N -0.522 5.522 9 C 0.559 3.441 10 O -0.582 6.582 11 C -0.248 4.248 12 C 0.035 3.965 13 C -0.174 4.174 14 C -0.037 4.037 15 C -0.209 4.209 16 C 0.131 3.869 17 O -0.219 6.219 18 C -0.418 4.418 19 H 0.107 0.893 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.019 2.981 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.250 4.250 27 C -0.035 4.035 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.436 0.564 38 H 0.437 0.563 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.126 0.874 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 13.905 -23.676 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.201 4.201 5 C 0.306 3.694 6 O -0.452 6.452 7 N -0.265 5.265 8 N -0.269 5.269 9 C 0.351 3.649 10 O -0.463 6.463 11 C -0.270 4.270 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.054 4.054 15 C -0.229 4.229 16 C 0.079 3.921 17 O -0.124 6.124 18 C -0.494 4.494 19 H 0.124 0.876 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.838 3.162 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.269 4.269 27 C -0.053 4.053 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.279 0.721 38 H 0.280 0.720 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.144 0.856 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.634 13.678 -23.267 30.238 hybrid contribution 0.778 -0.541 0.846 1.270 sum -12.856 13.137 -22.421 28.993 Atomic orbital electron populations 1.21712 0.91175 1.02552 1.03095 1.20852 0.98286 0.97009 0.91159 1.21969 1.01768 0.92253 1.04147 1.21969 1.01765 1.00473 0.95931 1.21703 0.79636 0.79402 0.88680 1.90711 1.55548 1.50518 1.48406 1.45112 1.07517 1.56264 1.17656 1.44876 1.07113 1.56759 1.18172 1.18616 0.80003 0.79398 0.86841 1.90794 1.55480 1.51576 1.48469 1.22406 0.97147 1.08649 0.98749 1.22179 0.95530 0.88486 0.92273 1.18746 0.93137 1.08001 0.97650 1.21309 1.00427 0.92781 0.90916 1.20418 0.91947 1.08684 1.01817 1.20210 0.94493 0.90926 0.86488 1.83886 1.26363 1.66478 1.35711 1.21884 0.79627 1.35123 1.12763 0.87564 1.26621 1.06066 0.94817 0.94190 1.70148 1.38051 1.33557 1.13225 0.84642 0.73482 0.79362 0.78751 1.18044 1.19687 1.18104 1.21216 1.00106 1.07572 0.98035 1.21338 0.95210 0.93755 0.94967 0.92986 0.88930 0.92986 0.91466 0.88532 0.92544 0.92554 0.88525 0.91472 0.72054 0.71965 0.83006 0.84829 0.82366 0.86122 0.91602 0.85628 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 7.76 71.98 0.56 -0.83 16 2 C -0.07 -0.73 0.87 -52.93 -0.05 -0.78 16 3 C -0.14 -1.04 8.37 71.98 0.60 -0.44 16 4 C -0.14 -1.05 8.37 71.98 0.60 -0.44 16 5 C 0.52 9.40 6.60 87.66 0.58 9.98 16 6 O -0.57 -14.55 15.82 -3.03 -0.05 -14.59 16 7 N -0.52 -9.23 6.05 -173.54 -1.05 -10.28 16 8 N -0.52 -10.40 6.26 -176.68 -1.11 -11.51 16 9 C 0.56 12.89 7.85 86.33 0.68 13.57 16 10 O -0.58 -16.47 16.07 -4.40 -0.07 -16.54 16 11 C -0.25 -5.28 9.41 23.62 0.22 -5.06 16 12 C 0.04 0.86 9.45 23.82 0.23 1.08 16 13 C -0.17 -5.14 5.87 -20.12 -0.12 -5.26 16 14 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 15 C -0.21 -8.27 9.97 22.34 0.22 -8.05 16 16 C 0.13 6.17 6.66 22.72 0.15 6.32 16 17 O -0.22 -12.63 9.74 -20.29 -0.20 -12.83 16 18 C -0.42 -23.33 9.48 67.94 0.64 -22.69 16 19 H 0.11 5.37 5.18 -2.91 -0.02 5.35 16 20 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 21 N -0.91 -54.18 13.67 21.62 0.30 -53.88 16 22 Si 1.02 41.09 29.55 68.60 2.03 43.12 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 26 C -0.25 -10.20 9.14 22.34 0.20 -9.99 16 27 C -0.03 -1.12 9.78 22.55 0.22 -0.90 16 28 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.07 0.44 7.56 -2.39 -0.02 0.42 16 32 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.07 0.44 7.57 -2.38 -0.02 0.42 16 37 H 0.44 6.73 6.83 -213.32 -1.46 5.27 16 38 H 0.44 7.90 7.98 -213.32 -1.70 6.20 16 39 H 0.15 2.55 6.07 -2.91 -0.02 2.53 16 40 H 0.13 3.14 7.52 -2.91 -0.02 3.12 16 41 H 0.16 3.53 6.16 -2.91 -0.02 3.51 16 42 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 44 H 0.13 5.17 5.62 -2.91 -0.02 5.15 16 45 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -74.56 384.78 3.16 -71.40 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -2.12 Total: 30.03 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 5.42 Total: -24.91 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -1.86 Total: -75.67 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.32 Total: -43.97 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -74.56 3.16 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130797456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.930 kcal (2) G-P(sol) polarization free energy of solvation -74.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds