Wall clock time and date at job start Tue Mar 31 2020 17:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47075 * 2 1 4 4 C 1.53001 * 109.47201 * 240.00244 * 2 1 3 5 5 O 1.45195 * 109.47365 * 120.00075 * 2 1 3 6 6 C 1.34642 * 116.99876 * 59.99739 * 5 2 1 7 7 O 1.21506 * 119.99911 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99859 * 179.97438 * 6 5 2 9 9 C 1.46512 * 124.91868 * 179.97438 * 8 6 5 10 10 C 1.53730 * 105.22216 * 180.02562 * 9 8 6 11 11 C 1.51253 * 104.51417 * 359.78970 * 10 9 8 12 12 C 1.37726 * 130.85555 * 179.57145 * 11 10 9 13 13 C 1.39761 * 120.02595 * 180.36581 * 12 11 10 14 14 C 1.47469 * 120.24970 * 180.23065 * 13 12 11 15 15 O 1.21620 * 120.00044 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99894 * 179.97438 * 14 13 12 17 17 C 1.36896 * 119.99731 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00249 * 0.02562 * 17 16 14 19 19 C 1.39026 * 120.00031 * 180.02562 * 17 16 14 20 20 N 1.31382 * 119.99441 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00395 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46949 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47074 * 120.00180 * 21 19 17 24 24 H 1.48496 * 109.47448 * 240.00599 * 21 19 17 25 25 C 1.39836 * 119.50052 * 0.26256 * 13 12 11 26 26 C 1.37345 * 120.08105 * 359.96989 * 25 13 12 27 27 C 1.38878 * 108.50076 * 0.34975 * 11 10 9 28 28 H 1.08997 * 109.46870 * 299.99752 * 1 2 3 29 29 H 1.08999 * 109.46697 * 59.99899 * 1 2 3 30 30 H 1.08993 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47720 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47437 * 300.00203 * 3 2 1 33 33 H 1.09003 * 109.47286 * 59.99703 * 3 2 1 34 34 H 1.08993 * 109.46807 * 299.99991 * 4 2 1 35 35 H 1.08999 * 109.46958 * 60.00013 * 4 2 1 36 36 H 1.08998 * 109.47378 * 179.97438 * 4 2 1 37 37 H 1.08997 * 110.28743 * 298.97229 * 9 8 6 38 38 H 1.09000 * 110.29265 * 61.09611 * 9 8 6 39 39 H 1.09000 * 110.42969 * 118.75578 * 10 9 8 40 40 H 1.09003 * 110.42578 * 241.11831 * 10 9 8 41 41 H 1.08002 * 119.99087 * 0.65103 * 12 11 10 42 42 H 0.96996 * 119.99748 * 0.02562 * 16 14 13 43 43 H 0.96999 * 119.99665 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.96269 * 179.97438 * 25 13 12 45 45 H 1.07996 * 119.76331 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0682 -2.6657 2.4165 9 6 1.7397 -4.0671 2.6903 10 6 2.4391 -4.3932 4.0199 11 6 3.1373 -3.1083 4.4062 12 6 3.9118 -2.7980 5.5019 13 6 4.4488 -1.5149 5.6380 14 6 5.2830 -1.1788 6.8068 15 8 5.5064 -2.0198 7.6565 16 7 5.7987 0.0601 6.9327 17 6 6.5727 0.3722 8.0179 18 1 6.7703 -0.3743 8.7729 19 6 7.1042 1.6502 8.1481 20 7 6.8633 2.5585 7.2299 21 14 8.1609 2.0760 9.6285 22 1 8.2806 0.8866 10.5097 23 1 9.5114 2.4898 9.1701 24 1 7.5312 3.1897 10.3823 25 6 4.1885 -0.5520 4.6580 26 6 3.4111 -0.8687 3.5710 27 6 2.8727 -2.1533 3.4332 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1301 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6768 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 0.6613 -4.1900 2.7900 38 1 2.1221 -4.7072 1.8952 39 1 1.7062 -4.6739 4.7764 40 1 3.1665 -5.1930 3.8810 41 1 4.1082 -3.5479 6.2540 42 1 5.6208 0.7306 6.2548 43 1 7.2338 3.4503 7.3210 44 1 4.5993 0.4420 4.7559 45 1 3.2137 -0.1212 2.8170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152817561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:11 Heat of formation + Delta-G solvation = -84.686828 kcal Electronic energy + Delta-G solvation = -28507.748539 eV Core-core repulsion = 24490.359898 eV Total energy + Delta-G solvation = -4017.388641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47061 -40.01577 -38.41350 -37.15697 -35.61965 -34.40490 -34.08664 -32.43758 -31.39192 -29.65748 -29.03031 -27.61990 -27.61397 -25.42312 -24.37951 -23.09070 -22.09576 -21.12146 -19.94704 -19.30579 -18.15492 -18.14219 -16.93490 -16.87844 -16.35601 -15.61238 -15.41919 -15.12783 -14.87962 -14.45415 -14.40501 -13.92729 -13.68398 -13.65157 -13.58830 -13.20001 -12.70108 -12.64957 -12.60705 -12.38270 -12.33624 -12.15964 -12.12165 -12.06717 -11.95870 -11.62097 -11.58602 -11.51680 -11.18845 -10.63698 -10.60032 -10.39276 -10.32667 -10.29195 -10.14546 -9.61541 -8.61152 -8.52565 -8.10130 -7.68677 -6.57005 -3.89714 1.18725 1.63299 1.79719 2.60610 3.12206 3.21469 3.28783 3.52946 3.63679 4.07609 4.40410 4.45300 4.46695 4.47469 4.53378 4.66826 4.89346 4.90408 5.11496 5.11894 5.26031 5.28493 5.30703 5.36114 5.48385 5.48919 5.54906 5.58268 5.61316 5.67786 5.70839 5.78462 5.81330 5.88332 6.03684 6.04222 6.17088 6.27276 6.35764 6.50102 6.70688 6.84999 7.10828 7.32896 7.42500 7.95704 8.02514 8.49531 9.05350 9.41474 9.96830 10.60007 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002945 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.708006 B = 9506.840552 C =11181.759404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.132 3.868 3 C -0.143 4.143 4 C -0.183 4.183 5 O -0.349 6.349 6 C 0.665 3.335 7 O -0.557 6.557 8 N -0.534 5.534 9 C 0.128 3.872 10 C -0.084 4.084 11 C -0.140 4.140 12 C -0.035 4.035 13 C -0.109 4.109 14 C 0.469 3.531 15 O -0.598 6.598 16 N -0.543 5.543 17 C -0.293 4.293 18 H 0.109 0.891 19 C 0.023 3.977 20 N -0.890 5.890 21 Si 0.934 3.066 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.075 4.075 26 C -0.133 4.133 27 C 0.131 3.869 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.394 0.606 43 H 0.275 0.725 44 H 0.134 0.866 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 -5.222 -15.733 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.240 4.240 5 O -0.263 6.263 6 C 0.422 3.578 7 O -0.446 6.446 8 N -0.263 5.263 9 C 0.007 3.993 10 C -0.121 4.121 11 C -0.143 4.143 12 C -0.055 4.055 13 C -0.113 4.113 14 C 0.258 3.742 15 O -0.486 6.486 16 N -0.177 5.177 17 C -0.423 4.423 18 H 0.126 0.874 19 C -0.180 4.180 20 N -0.529 5.529 21 Si 0.760 3.240 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.095 4.095 26 C -0.154 4.154 27 C 0.036 3.964 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.154 0.846 42 H 0.229 0.771 43 H 0.085 0.915 44 H 0.152 0.848 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.570 -5.628 -15.625 20.240 hybrid contribution 0.357 0.849 0.093 0.926 sum -11.213 -4.779 -15.532 19.743 Atomic orbital electron populations 1.22514 0.93952 1.04887 1.02679 1.22176 0.94432 0.91831 0.82057 1.21884 1.02614 0.92160 1.03316 1.22514 1.01792 1.03255 0.96475 1.86443 1.70865 1.22836 1.46187 1.17649 0.78513 0.80790 0.80871 1.90903 1.40741 1.70620 1.42357 1.44501 1.49576 1.12693 1.19536 1.22027 1.01148 0.78346 0.97752 1.21127 0.99415 0.96082 0.95459 1.19760 1.03165 0.95159 0.96213 1.20382 0.93694 0.96085 0.95305 1.20214 1.00424 0.94134 0.96559 1.17582 0.85583 0.83860 0.87201 1.90601 1.65130 1.48639 1.44213 1.41899 1.43155 1.10270 1.22421 1.19888 1.24583 0.97170 1.00668 0.87365 1.25380 0.98313 0.95355 0.98988 1.69603 1.44444 1.04742 1.34160 0.85729 0.79022 0.78747 0.80492 1.18980 1.20545 1.20541 1.21166 0.96353 0.99443 0.92505 1.20623 1.00553 0.94264 0.99958 1.18391 0.94499 0.94682 0.88842 0.91968 0.91044 0.89601 0.91140 0.90087 0.91138 0.89596 0.91046 0.91972 0.89767 0.89766 0.88813 0.88839 0.84554 0.77139 0.91507 0.84786 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 2 C 0.13 1.36 1.13 -90.62 -0.10 1.26 16 3 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 4 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 5 O -0.35 -4.55 7.09 -40.33 -0.29 -4.84 16 6 C 0.66 9.32 7.86 54.05 0.42 9.75 16 7 O -0.56 -8.17 12.17 -19.28 -0.23 -8.40 16 8 N -0.53 -7.24 3.12 -118.27 -0.37 -7.60 16 9 C 0.13 1.33 7.05 -3.66 -0.03 1.30 16 10 C -0.08 -0.85 6.94 -27.23 -0.19 -1.04 16 11 C -0.14 -2.02 6.21 -104.30 -0.65 -2.67 16 12 C -0.03 -0.60 9.59 -39.20 -0.38 -0.97 16 13 C -0.11 -2.14 5.88 -104.97 -0.62 -2.76 16 14 C 0.47 11.47 7.71 -12.50 -0.10 11.37 16 15 O -0.60 -16.49 15.92 5.26 0.08 -16.41 16 16 N -0.54 -13.79 5.23 -11.94 -0.06 -13.85 16 17 C -0.29 -8.03 9.68 -15.00 -0.15 -8.17 16 18 H 0.11 3.09 7.15 -52.49 -0.38 2.72 16 19 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 20 N -0.89 -23.36 13.05 55.50 0.72 -22.63 16 21 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 C -0.07 -1.29 9.52 -39.31 -0.37 -1.67 16 26 C -0.13 -2.07 9.44 -39.26 -0.37 -2.44 16 27 C 0.13 1.96 6.63 -83.53 -0.55 1.41 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.14 2.34 7.65 -52.49 -0.40 1.94 16 42 H 0.39 9.43 5.93 -40.82 -0.24 9.19 16 43 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.13 2.26 6.41 -52.49 -0.34 1.92 16 45 H 0.14 1.95 6.00 -52.49 -0.31 1.63 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -31.78 368.95 -7.89 -39.68 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.07 Total: 11.11 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.22 Total: 2.07 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.29 Total: -44.09 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.44 Total: -29.65 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.78 -7.89 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152817561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.011 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds