Wall clock time and date at job start Tue Mar 31 2020 17:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47075 * 2 1 4 4 C 1.53001 * 109.47201 * 240.00244 * 2 1 3 5 5 O 1.45195 * 109.47365 * 120.00075 * 2 1 3 6 6 C 1.34642 * 116.99876 * 59.99739 * 5 2 1 7 7 O 1.21506 * 119.99911 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99859 * 179.97438 * 6 5 2 9 9 C 1.46512 * 124.91868 * 179.97438 * 8 6 5 10 10 C 1.53730 * 105.22216 * 180.02562 * 9 8 6 11 11 C 1.51253 * 104.51417 * 359.78970 * 10 9 8 12 12 C 1.37726 * 130.85555 * 179.57145 * 11 10 9 13 13 C 1.39761 * 120.02595 * 180.36581 * 12 11 10 14 14 C 1.47469 * 120.24970 * 180.23065 * 13 12 11 15 15 O 1.21620 * 120.00044 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99894 * 179.97438 * 14 13 12 17 17 C 1.36896 * 119.99731 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00249 * 0.02562 * 17 16 14 19 19 C 1.39026 * 120.00031 * 180.02562 * 17 16 14 20 20 N 1.31382 * 119.99441 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00395 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46949 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47074 * 120.00180 * 21 19 17 24 24 H 1.48496 * 109.47448 * 240.00599 * 21 19 17 25 25 C 1.39836 * 119.50052 * 0.26256 * 13 12 11 26 26 C 1.37345 * 120.08105 * 359.96989 * 25 13 12 27 27 C 1.38878 * 108.50076 * 0.34975 * 11 10 9 28 28 H 1.08997 * 109.46870 * 299.99752 * 1 2 3 29 29 H 1.08999 * 109.46697 * 59.99899 * 1 2 3 30 30 H 1.08993 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47720 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47437 * 300.00203 * 3 2 1 33 33 H 1.09003 * 109.47286 * 59.99703 * 3 2 1 34 34 H 1.08993 * 109.46807 * 299.99991 * 4 2 1 35 35 H 1.08999 * 109.46958 * 60.00013 * 4 2 1 36 36 H 1.08998 * 109.47378 * 179.97438 * 4 2 1 37 37 H 1.08997 * 110.28743 * 298.97229 * 9 8 6 38 38 H 1.09000 * 110.29265 * 61.09611 * 9 8 6 39 39 H 1.09000 * 110.42969 * 118.75578 * 10 9 8 40 40 H 1.09003 * 110.42578 * 241.11831 * 10 9 8 41 41 H 1.08002 * 119.99087 * 0.65103 * 12 11 10 42 42 H 0.96996 * 119.99748 * 0.02562 * 16 14 13 43 43 H 0.96999 * 119.99665 * 179.97438 * 20 19 17 44 44 H 1.07999 * 119.96269 * 179.97438 * 25 13 12 45 45 H 1.07996 * 119.76331 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0682 -2.6657 2.4165 9 6 1.7397 -4.0671 2.6903 10 6 2.4391 -4.3932 4.0199 11 6 3.1373 -3.1083 4.4062 12 6 3.9118 -2.7980 5.5019 13 6 4.4488 -1.5149 5.6380 14 6 5.2830 -1.1788 6.8068 15 8 5.5064 -2.0198 7.6565 16 7 5.7987 0.0601 6.9327 17 6 6.5727 0.3722 8.0179 18 1 6.7703 -0.3743 8.7729 19 6 7.1042 1.6502 8.1481 20 7 6.8633 2.5585 7.2299 21 14 8.1609 2.0760 9.6285 22 1 8.2806 0.8866 10.5097 23 1 9.5114 2.4898 9.1701 24 1 7.5312 3.1897 10.3823 25 6 4.1885 -0.5520 4.6580 26 6 3.4111 -0.8687 3.5710 27 6 2.8727 -2.1533 3.4332 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1301 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6768 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 0.6613 -4.1900 2.7900 38 1 2.1221 -4.7072 1.8952 39 1 1.7062 -4.6739 4.7764 40 1 3.1665 -5.1930 3.8810 41 1 4.1082 -3.5479 6.2540 42 1 5.6208 0.7306 6.2548 43 1 7.2338 3.4503 7.3210 44 1 4.5993 0.4420 4.7559 45 1 3.2137 -0.1212 2.8170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152817561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:10 Heat of formation + Delta-G solvation = -103.340651 kcal Electronic energy + Delta-G solvation = -28508.557429 eV Core-core repulsion = 24490.359898 eV Total energy + Delta-G solvation = -4018.197531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54083 -41.18195 -40.08859 -38.31647 -36.89411 -36.08971 -35.27739 -33.61711 -33.25013 -31.04293 -30.19073 -28.37215 -28.31193 -27.26062 -25.46550 -24.44180 -23.36377 -22.13209 -21.27243 -20.65519 -20.10557 -19.27392 -18.25469 -17.87045 -17.60389 -16.97475 -16.67999 -16.28730 -16.10366 -16.00142 -15.48552 -15.27681 -15.26281 -15.10154 -14.73993 -14.55308 -13.83687 -13.68986 -13.60159 -13.54259 -13.42043 -13.31969 -13.00334 -12.94971 -12.93352 -12.90918 -12.90086 -12.48808 -12.43271 -12.37626 -12.10552 -11.83813 -11.61571 -11.45773 -11.28479 -11.28238 -10.51785 -10.10028 -9.88319 -8.93269 -8.54049 -5.98420 -0.18587 0.34117 0.84068 1.35394 1.42680 1.50974 1.57423 2.10455 2.27737 2.51254 2.80969 3.07332 3.31179 3.45035 3.55893 3.70612 3.78215 3.92675 3.94955 4.06483 4.13826 4.20050 4.30653 4.39409 4.51401 4.59194 4.61722 4.69622 4.76713 4.82955 4.87005 4.88001 4.94850 4.96926 5.04427 5.13675 5.22794 5.26719 5.28723 5.31009 5.37186 5.39964 5.45265 5.80122 5.96307 6.18584 6.51821 6.97726 7.04334 7.45597 8.01958 8.63484 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002945 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.708006 B = 9506.840552 C =11181.759404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.120 3.880 3 C -0.140 4.140 4 C -0.178 4.178 5 O -0.360 6.360 6 C 0.661 3.339 7 O -0.564 6.564 8 N -0.537 5.537 9 C 0.121 3.879 10 C -0.077 4.077 11 C -0.133 4.133 12 C -0.035 4.035 13 C -0.140 4.140 14 C 0.470 3.530 15 O -0.637 6.637 16 N -0.553 5.553 17 C -0.335 4.335 18 H 0.084 0.916 19 C -0.010 4.010 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.271 1.271 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.070 4.070 26 C -0.133 4.133 27 C 0.142 3.858 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.133 0.867 42 H 0.398 0.602 43 H 0.282 0.718 44 H 0.132 0.868 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 -5.385 -17.536 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.084 3.916 3 C -0.197 4.197 4 C -0.235 4.235 5 O -0.275 6.275 6 C 0.418 3.582 7 O -0.453 6.453 8 N -0.266 5.266 9 C 0.002 3.998 10 C -0.113 4.113 11 C -0.136 4.136 12 C -0.055 4.055 13 C -0.145 4.145 14 C 0.260 3.740 15 O -0.527 6.527 16 N -0.188 5.188 17 C -0.465 4.465 18 H 0.102 0.898 19 C -0.211 4.211 20 N -0.550 5.550 21 Si 0.821 3.179 22 H -0.196 1.196 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.090 4.090 26 C -0.154 4.154 27 C 0.046 3.954 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.233 0.767 43 H 0.092 0.908 44 H 0.150 0.850 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.760 -5.787 -17.474 22.398 hybrid contribution 0.555 0.807 0.439 1.073 sum -12.205 -4.980 -17.035 21.540 Atomic orbital electron populations 1.22468 0.93477 1.03816 1.03776 1.22549 0.94956 0.92668 0.81400 1.21926 1.02451 0.90837 1.04454 1.22468 1.01590 1.02250 0.97234 1.86438 1.71014 1.22465 1.47550 1.17800 0.78423 0.81125 0.80841 1.90908 1.40991 1.70912 1.42511 1.44760 1.49046 1.13807 1.18966 1.22352 1.02357 0.76823 0.98273 1.21289 1.00011 0.94277 0.95773 1.20048 1.01789 0.97256 0.94543 1.20376 0.93914 0.94959 0.96206 1.19894 1.02329 0.96170 0.96075 1.18331 0.84840 0.82986 0.87847 1.90547 1.66465 1.49623 1.46072 1.41891 1.43714 1.10819 1.22371 1.19827 1.27261 0.97746 1.01644 0.89771 1.26168 0.98792 0.94576 1.01551 1.69656 1.44941 1.05124 1.35322 0.84795 0.77707 0.78293 0.77095 1.19585 1.19330 1.19321 1.21087 0.96521 0.98880 0.92499 1.20693 1.00076 0.95141 0.99473 1.18573 0.93393 0.94414 0.89060 0.92204 0.88650 0.91628 0.91434 0.87531 0.91430 0.91624 0.88651 0.92210 0.88187 0.88193 0.86513 0.86543 0.84903 0.76679 0.90828 0.85019 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 2 C 0.12 2.25 1.13 -10.79 -0.01 2.24 16 3 C -0.14 -1.99 8.85 71.98 0.64 -1.35 16 4 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 5 O -0.36 -8.85 7.09 -55.52 -0.39 -9.24 16 6 C 0.66 17.34 7.86 129.79 1.02 18.36 16 7 O -0.56 -15.56 12.17 19.82 0.24 -15.32 16 8 N -0.54 -13.28 3.12 -758.51 -2.36 -15.64 16 9 C 0.12 2.11 7.05 86.62 0.61 2.72 16 10 C -0.08 -1.29 6.94 30.27 0.21 -1.08 16 11 C -0.13 -3.60 6.21 -19.66 -0.12 -3.73 16 12 C -0.03 -1.19 9.59 22.52 0.22 -0.97 16 13 C -0.14 -5.68 5.88 -20.09 -0.12 -5.80 16 14 C 0.47 24.11 7.71 86.68 0.67 24.77 16 15 O -0.64 -36.92 15.92 -4.10 -0.07 -36.98 16 16 N -0.55 -29.49 5.23 -309.94 -1.62 -31.11 16 17 C -0.34 -19.21 9.68 84.09 0.81 -18.40 16 18 H 0.08 5.11 7.15 -2.91 -0.02 5.09 16 19 C -0.01 -0.52 5.50 84.95 0.47 -0.05 16 20 N -0.91 -48.43 13.05 21.68 0.28 -48.14 16 21 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.07 -2.46 9.52 22.45 0.21 -2.24 16 26 C -0.13 -4.03 9.44 22.48 0.21 -3.82 16 27 C 0.14 3.99 6.63 38.51 0.26 4.25 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.13 4.61 7.65 -2.91 -0.02 4.58 16 42 H 0.40 19.99 5.93 -92.71 -0.55 19.44 16 43 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.13 4.60 6.41 -2.91 -0.02 4.58 16 45 H 0.15 4.09 6.00 -2.91 -0.02 4.08 16 Total: -1.00 -71.36 368.95 4.87 -66.50 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.48 Total: 35.83 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 6.28 Total: 9.87 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -3.70 Total: -94.90 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -0.22 Total: -61.55 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -71.36 4.87 -66.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152817561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.843 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds