Wall clock time and date at job start Tue Mar 31 2020 16:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47195 * 2 1 4 4 C 1.53005 * 109.47206 * 184.62254 * 3 2 1 5 5 H 1.08993 * 109.57025 * 180.26556 * 4 3 2 6 6 C 1.50439 * 109.66450 * 59.97030 * 4 3 2 7 7 O 1.21283 * 118.48801 * 47.43127 * 6 4 3 8 8 N 1.33380 * 123.02569 * 227.41622 * 6 4 3 9 9 C 1.45648 * 124.58773 * 4.31386 * 8 6 4 10 10 C 1.53468 * 110.74231 * 337.98504 * 9 8 6 11 11 N 1.47054 * 109.56625 * 300.50845 * 4 3 2 12 12 C 1.34773 * 121.35201 * 342.65092 * 11 4 3 13 13 O 1.21592 * 120.00419 * 353.89033 * 12 11 4 14 14 C 1.47538 * 119.99686 * 173.89188 * 12 11 4 15 15 C 1.39666 * 120.19321 * 248.89513 * 14 12 11 16 16 C 1.37828 * 119.91855 * 179.74845 * 15 14 12 17 17 C 1.38572 * 120.32422 * 0.27178 * 16 15 14 18 18 C 1.38025 * 120.39853 * 0.02562 * 17 16 15 19 19 C 1.38834 * 120.07203 * 359.97438 * 18 17 16 20 20 O 1.35525 * 120.15866 * 180.02562 * 19 18 17 21 21 C 1.34816 * 116.99908 * 354.26166 * 20 19 18 22 22 H 1.08000 * 120.00373 * 5.09758 * 21 20 19 23 23 C 1.38705 * 119.99895 * 185.09037 * 21 20 19 24 24 N 1.31515 * 119.99780 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99861 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47096 * 90.00535 * 25 23 21 27 27 H 1.48497 * 109.46871 * 209.99982 * 25 23 21 28 28 H 1.48491 * 109.47310 * 330.00046 * 25 23 21 29 29 H 1.09003 * 109.46571 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.46761 * 59.99398 * 1 2 3 31 31 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46571 * 239.99983 * 2 1 3 33 33 H 1.08995 * 109.47182 * 120.00651 * 2 1 3 34 34 H 1.09000 * 109.46965 * 64.62900 * 3 2 1 35 35 H 1.08996 * 109.47715 * 304.62493 * 3 2 1 36 36 H 0.96993 * 117.70739 * 184.34065 * 8 6 4 37 37 H 1.09012 * 109.21429 * 98.43515 * 9 8 6 38 38 H 1.09005 * 109.21865 * 217.80811 * 9 8 6 39 39 H 1.09004 * 109.84816 * 287.31883 * 10 9 8 40 40 H 1.08999 * 109.84420 * 166.49930 * 10 9 8 41 41 H 1.08002 * 120.04342 * 0.02562 * 15 14 12 42 42 H 1.08002 * 119.84051 * 180.25808 * 16 15 14 43 43 H 1.08004 * 119.79993 * 179.97438 * 17 16 15 44 44 H 1.07999 * 119.96102 * 179.97438 * 18 17 16 45 45 H 0.97001 * 120.00205 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5657 1.4440 -0.1163 5 1 3.9311 2.4708 -0.1117 6 6 3.9765 0.7687 -1.3963 7 8 3.4122 1.0826 -2.4229 8 7 4.9330 -0.1590 -1.4542 9 6 5.6323 -0.6990 -0.2963 10 6 5.5466 0.2697 0.8909 11 7 4.1467 0.7092 1.0173 12 6 3.4290 0.4535 2.1291 13 8 2.3161 0.9263 2.2565 14 6 3.9940 -0.4002 3.1916 15 6 3.4566 -1.6660 3.4356 16 6 3.9921 -2.4609 4.4261 17 6 5.0587 -2.0083 5.1862 18 6 5.5960 -0.7571 4.9605 19 6 5.0695 0.0572 3.9670 20 8 5.5961 1.2858 3.7435 21 6 6.5514 1.7067 4.5966 22 1 6.9224 1.0419 5.3626 23 6 7.0578 2.9936 4.4906 24 7 6.6065 3.8030 3.5574 25 14 8.3819 3.5766 5.6723 26 1 9.7202 3.2701 5.1063 27 1 8.2540 5.0421 5.8750 28 1 8.2241 2.8811 6.9747 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.7460 1.9317 0.9286 35 1 1.6107 1.9797 -0.8456 36 1 5.1806 -0.4975 -2.3288 37 1 5.1822 -1.6520 -0.0176 38 1 6.6799 -0.8583 -0.5519 39 1 6.1882 1.1325 0.7117 40 1 5.8570 -0.2367 1.8049 41 1 2.6254 -2.0234 2.8459 42 1 3.5783 -3.4412 4.6109 43 1 5.4714 -2.6380 5.9605 44 1 6.4270 -0.4113 5.5574 45 1 6.9603 4.7032 3.4834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152846676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:22 Heat of formation + Delta-G solvation = -48.392820 kcal Electronic energy + Delta-G solvation = -30463.543145 eV Core-core repulsion = 26447.728330 eV Total energy + Delta-G solvation = -4015.814815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96606 -39.47007 -38.35950 -36.53599 -36.25424 -34.70852 -33.36765 -32.49523 -30.92234 -29.87876 -29.09813 -27.84957 -25.58088 -25.09809 -23.21928 -22.99153 -21.77611 -21.20302 -20.07634 -18.54661 -18.19480 -17.59409 -17.07424 -16.72784 -15.80802 -15.62049 -15.36180 -15.21889 -14.79125 -14.57918 -14.27790 -14.14550 -13.84696 -13.81147 -13.40358 -13.29337 -12.85332 -12.70563 -12.39419 -12.26241 -12.11815 -11.85414 -11.80528 -11.53192 -11.44872 -11.17818 -11.05013 -10.94602 -10.87890 -10.57896 -10.53667 -10.31166 -9.97739 -9.68904 -9.09879 -9.02693 -8.70165 -8.35051 -8.25223 -7.48650 -6.63593 -4.23971 1.74668 2.14280 2.69475 3.01068 3.04004 3.08330 3.09997 3.19923 3.42784 3.79893 4.31181 4.58546 4.79426 4.85527 4.98251 5.02189 5.17093 5.27328 5.28776 5.36345 5.43550 5.51033 5.61914 5.71950 5.78055 5.85005 5.89968 6.04029 6.05300 6.13526 6.19141 6.28217 6.41569 6.44332 6.49167 6.55556 6.64820 6.77157 6.83750 6.93067 6.97814 7.10840 7.16635 7.30488 7.53716 7.75331 7.79071 8.23667 8.69757 8.80767 9.42984 10.52218 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.004964 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.160028 B = 5639.546111 C = 6673.672782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.123 4.123 4 C 0.139 3.861 5 H 0.104 0.896 6 C 0.522 3.478 7 O -0.551 6.551 8 N -0.718 5.718 9 C 0.095 3.905 10 C 0.102 3.898 11 N -0.601 5.601 12 C 0.599 3.401 13 O -0.528 6.528 14 C -0.213 4.213 15 C -0.032 4.032 16 C -0.216 4.216 17 C -0.057 4.057 18 C -0.233 4.233 19 C 0.173 3.827 20 O -0.162 6.162 21 C -0.398 4.398 22 H 0.095 0.905 23 C 0.046 3.954 24 N -0.850 5.850 25 Si 0.940 3.060 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.395 0.605 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 -9.815 -4.170 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.160 4.160 4 C 0.032 3.968 5 H 0.122 0.878 6 C 0.308 3.692 7 O -0.428 6.428 8 N -0.369 5.369 9 C -0.031 4.031 10 C -0.022 4.022 11 N -0.336 5.336 12 C 0.390 3.610 13 O -0.406 6.406 14 C -0.217 4.217 15 C -0.051 4.051 16 C -0.235 4.235 17 C -0.075 4.075 18 C -0.252 4.252 19 C 0.117 3.883 20 O -0.064 6.064 21 C -0.474 4.474 22 H 0.112 0.888 23 C -0.160 4.160 24 N -0.483 5.483 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.150 0.850 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.218 -8.855 -4.657 10.079 hybrid contribution 1.179 0.080 0.404 1.249 sum -0.040 -8.775 -4.253 9.751 Atomic orbital electron populations 1.21643 0.95949 1.00758 1.01570 1.21594 0.96152 0.96649 1.00891 1.22177 0.89728 0.98890 1.05209 1.21367 0.97146 0.96253 0.82000 0.87843 1.20439 0.78532 0.78928 0.91307 1.90731 1.53372 1.63728 1.34982 1.45385 1.39010 1.41890 1.10655 1.21942 0.97383 0.97469 0.86260 1.22118 0.82761 0.98631 0.98656 1.47965 1.12798 1.56857 1.16006 1.17992 0.83893 0.78791 0.80308 1.90628 1.20507 1.51272 1.78145 1.18750 1.01658 0.97833 1.03503 1.20572 0.96891 0.91377 0.96273 1.20520 1.01365 1.00688 1.00913 1.20913 0.94728 0.94821 0.97033 1.21137 1.05240 0.95821 1.03008 1.19229 0.89970 0.86840 0.92294 1.83942 1.48426 1.25374 1.48677 1.21352 1.14944 0.98386 1.12710 0.88790 1.25298 0.98524 0.94646 0.97562 1.70012 1.40239 1.07295 1.30752 0.85716 0.79628 0.78531 0.79645 1.19766 1.20182 1.19092 0.92311 0.93338 0.93559 0.93875 0.91479 0.85870 0.91488 0.76973 0.91278 0.89470 0.89635 0.87157 0.86720 0.87024 0.87065 0.84979 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.88 4.97 -26.73 -0.13 -2.01 16 3 C -0.12 -2.11 4.19 -26.73 -0.11 -2.23 16 4 C 0.14 2.40 3.36 -68.90 -0.23 2.17 16 5 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 6 C 0.52 8.45 6.02 -11.73 -0.07 8.38 16 7 O -0.55 -10.28 17.19 5.56 0.10 -10.18 16 8 N -0.72 -9.21 5.42 -61.06 -0.33 -9.54 16 9 C 0.09 1.09 7.35 -4.26 -0.03 1.06 16 10 C 0.10 1.59 5.80 -3.38 -0.02 1.57 16 11 N -0.60 -10.70 2.82 -167.47 -0.47 -11.17 16 12 C 0.60 12.01 4.92 -12.47 -0.06 11.95 16 13 O -0.53 -11.49 12.02 5.28 0.06 -11.42 16 14 C -0.21 -4.16 4.52 -104.81 -0.47 -4.63 16 15 C -0.03 -0.54 9.78 -39.20 -0.38 -0.92 16 16 C -0.22 -3.29 10.02 -39.61 -0.40 -3.69 16 17 C -0.06 -0.90 10.03 -39.54 -0.40 -1.29 16 18 C -0.23 -4.39 9.16 -39.44 -0.36 -4.76 16 19 C 0.17 3.67 5.19 -38.60 -0.20 3.47 16 20 O -0.16 -4.02 8.36 0.78 0.01 -4.02 16 21 C -0.40 -9.90 9.49 30.90 0.29 -9.60 16 22 H 0.09 2.15 5.21 -52.49 -0.27 1.88 16 23 C 0.05 1.15 5.49 -17.51 -0.10 1.05 16 24 N -0.85 -22.84 13.67 55.48 0.76 -22.09 16 25 Si 0.94 18.90 29.55 -169.99 -5.02 13.88 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 28 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.71 7.07 -51.93 -0.37 0.34 16 33 H 0.07 1.17 5.19 -51.93 -0.27 0.90 16 34 H 0.12 2.38 5.56 -52.47 -0.29 2.08 16 35 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 36 H 0.40 4.28 8.80 -40.82 -0.36 3.93 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.11 1.84 5.12 -51.93 -0.27 1.58 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.13 2.47 5.64 -52.49 -0.30 2.18 16 45 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -30.15 360.52 -7.67 -37.82 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.89 Total: 12.45 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.31 Total: -1.15 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.04 Total: -42.80 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.17 Total: -25.62 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.15 -7.67 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152846676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.576 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds