Wall clock time and date at job start Tue Mar 31 2020 16:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47195 * 2 1 4 4 C 1.53005 * 109.47206 * 184.62254 * 3 2 1 5 5 H 1.08993 * 109.57025 * 180.26556 * 4 3 2 6 6 C 1.50439 * 109.66450 * 59.97030 * 4 3 2 7 7 O 1.21283 * 118.48801 * 47.43127 * 6 4 3 8 8 N 1.33380 * 123.02569 * 227.41622 * 6 4 3 9 9 C 1.45648 * 124.58773 * 4.31386 * 8 6 4 10 10 C 1.53468 * 110.74231 * 337.98504 * 9 8 6 11 11 N 1.47054 * 109.56625 * 300.50845 * 4 3 2 12 12 C 1.34773 * 121.35201 * 342.65092 * 11 4 3 13 13 O 1.21592 * 120.00419 * 353.89033 * 12 11 4 14 14 C 1.47538 * 119.99686 * 173.89188 * 12 11 4 15 15 C 1.39666 * 120.19321 * 248.89513 * 14 12 11 16 16 C 1.37828 * 119.91855 * 179.74845 * 15 14 12 17 17 C 1.38572 * 120.32422 * 0.27178 * 16 15 14 18 18 C 1.38025 * 120.39853 * 0.02562 * 17 16 15 19 19 C 1.38834 * 120.07203 * 359.97438 * 18 17 16 20 20 O 1.35525 * 120.15866 * 180.02562 * 19 18 17 21 21 C 1.34816 * 116.99908 * 354.26166 * 20 19 18 22 22 H 1.08000 * 120.00373 * 5.09758 * 21 20 19 23 23 C 1.38705 * 119.99895 * 185.09037 * 21 20 19 24 24 N 1.31515 * 119.99780 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99861 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47096 * 90.00535 * 25 23 21 27 27 H 1.48497 * 109.46871 * 209.99982 * 25 23 21 28 28 H 1.48491 * 109.47310 * 330.00046 * 25 23 21 29 29 H 1.09003 * 109.46571 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.46761 * 59.99398 * 1 2 3 31 31 H 1.09000 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46571 * 239.99983 * 2 1 3 33 33 H 1.08995 * 109.47182 * 120.00651 * 2 1 3 34 34 H 1.09000 * 109.46965 * 64.62900 * 3 2 1 35 35 H 1.08996 * 109.47715 * 304.62493 * 3 2 1 36 36 H 0.96993 * 117.70739 * 184.34065 * 8 6 4 37 37 H 1.09012 * 109.21429 * 98.43515 * 9 8 6 38 38 H 1.09005 * 109.21865 * 217.80811 * 9 8 6 39 39 H 1.09004 * 109.84816 * 287.31883 * 10 9 8 40 40 H 1.08999 * 109.84420 * 166.49930 * 10 9 8 41 41 H 1.08002 * 120.04342 * 0.02562 * 15 14 12 42 42 H 1.08002 * 119.84051 * 180.25808 * 16 15 14 43 43 H 1.08004 * 119.79993 * 179.97438 * 17 16 15 44 44 H 1.07999 * 119.96102 * 179.97438 * 18 17 16 45 45 H 0.97001 * 120.00205 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5657 1.4440 -0.1163 5 1 3.9311 2.4708 -0.1117 6 6 3.9765 0.7687 -1.3963 7 8 3.4122 1.0826 -2.4229 8 7 4.9330 -0.1590 -1.4542 9 6 5.6323 -0.6990 -0.2963 10 6 5.5466 0.2697 0.8909 11 7 4.1467 0.7092 1.0173 12 6 3.4290 0.4535 2.1291 13 8 2.3161 0.9263 2.2565 14 6 3.9940 -0.4002 3.1916 15 6 3.4566 -1.6660 3.4356 16 6 3.9921 -2.4609 4.4261 17 6 5.0587 -2.0083 5.1862 18 6 5.5960 -0.7571 4.9605 19 6 5.0695 0.0572 3.9670 20 8 5.5961 1.2858 3.7435 21 6 6.5514 1.7067 4.5966 22 1 6.9224 1.0419 5.3626 23 6 7.0578 2.9936 4.4906 24 7 6.6065 3.8030 3.5574 25 14 8.3819 3.5766 5.6723 26 1 9.7202 3.2701 5.1063 27 1 8.2540 5.0421 5.8750 28 1 8.2241 2.8811 6.9747 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.7460 1.9317 0.9286 35 1 1.6107 1.9797 -0.8456 36 1 5.1806 -0.4975 -2.3288 37 1 5.1822 -1.6520 -0.0176 38 1 6.6799 -0.8583 -0.5519 39 1 6.1882 1.1325 0.7117 40 1 5.8570 -0.2367 1.8049 41 1 2.6254 -2.0234 2.8459 42 1 3.5783 -3.4412 4.6109 43 1 5.4714 -2.6380 5.9605 44 1 6.4270 -0.4113 5.5574 45 1 6.9603 4.7032 3.4834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152846676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:21 Heat of formation + Delta-G solvation = -68.352633 kcal Electronic energy + Delta-G solvation = -30464.408667 eV Core-core repulsion = 26447.728330 eV Total energy + Delta-G solvation = -4016.680337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.36547 -40.93561 -39.87242 -38.04309 -37.58690 -36.07868 -34.70235 -34.26870 -32.31566 -31.20539 -30.54400 -29.15176 -27.35817 -26.43700 -24.51360 -24.34752 -23.26263 -22.54548 -21.48968 -19.91550 -19.84875 -18.99437 -18.42196 -18.20099 -17.18169 -16.98197 -16.81031 -16.64730 -16.30521 -16.00405 -15.68295 -15.54444 -15.36117 -15.19460 -14.78076 -14.66175 -14.37824 -13.95615 -13.83758 -13.57199 -13.53488 -13.38173 -13.17255 -13.02579 -12.70257 -12.58445 -12.54291 -12.33341 -12.23006 -12.13720 -11.83373 -11.66269 -11.37182 -11.30578 -10.79357 -10.25485 -10.18529 -9.78747 -9.66889 -9.02402 -8.45331 -6.12639 0.32416 0.71191 1.36989 1.38389 1.45852 1.53783 1.63170 1.80827 2.16099 2.18003 2.82737 3.12689 3.31443 3.40100 3.56904 3.72656 3.82823 3.94074 4.07664 4.10751 4.18964 4.29443 4.37123 4.41386 4.55264 4.59063 4.63687 4.65813 4.76591 4.88924 4.90329 4.98887 5.01099 5.09795 5.12674 5.18243 5.24782 5.35312 5.52135 5.56290 5.60658 5.73364 5.74130 5.98807 6.06811 6.15982 6.31536 6.99670 7.00376 7.17729 7.74172 8.74966 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.004964 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.160028 B = 5639.546111 C = 6673.672782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.116 4.116 4 C 0.131 3.869 5 H 0.086 0.914 6 C 0.527 3.473 7 O -0.577 6.577 8 N -0.702 5.702 9 C 0.104 3.896 10 C 0.099 3.901 11 N -0.598 5.598 12 C 0.590 3.410 13 O -0.556 6.556 14 C -0.221 4.221 15 C -0.036 4.036 16 C -0.189 4.189 17 C -0.048 4.048 18 C -0.243 4.243 19 C 0.147 3.853 20 O -0.207 6.207 21 C -0.410 4.410 22 H 0.106 0.894 23 C -0.012 4.012 24 N -0.909 5.909 25 Si 1.009 2.991 26 H -0.261 1.261 27 H -0.282 1.282 28 H -0.254 1.254 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.129 0.871 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 -13.704 -3.559 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.154 4.154 4 C 0.025 3.975 5 H 0.104 0.896 6 C 0.313 3.687 7 O -0.457 6.457 8 N -0.353 5.353 9 C -0.020 4.020 10 C -0.024 4.024 11 N -0.332 5.332 12 C 0.381 3.619 13 O -0.436 6.436 14 C -0.226 4.226 15 C -0.055 4.055 16 C -0.207 4.207 17 C -0.066 4.066 18 C -0.262 4.262 19 C 0.094 3.906 20 O -0.112 6.112 21 C -0.486 4.486 22 H 0.124 0.876 23 C -0.211 4.211 24 N -0.546 5.546 25 Si 0.830 3.170 26 H -0.186 1.186 27 H -0.207 1.207 28 H -0.177 1.177 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.249 0.751 37 H 0.106 0.894 38 H 0.145 0.855 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.169 0.831 44 H 0.146 0.854 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.710 -12.836 -4.045 13.477 hybrid contribution 0.896 1.004 0.261 1.371 sum 0.186 -11.832 -3.783 12.423 Atomic orbital electron populations 1.21613 0.94459 1.01974 1.01474 1.21486 0.97443 0.95322 1.00154 1.22040 0.89777 0.99760 1.03821 1.21368 0.97396 0.95813 0.82941 0.89632 1.20051 0.79149 0.79505 0.90034 1.90718 1.54705 1.64916 1.35367 1.45239 1.37575 1.40515 1.11983 1.22034 0.99737 0.96303 0.83965 1.22173 0.81170 0.98750 1.00270 1.48008 1.13398 1.56230 1.15558 1.18277 0.83812 0.78905 0.80862 1.90623 1.21751 1.52460 1.78809 1.18997 1.01435 0.98910 1.03223 1.20928 0.97239 0.90334 0.96992 1.21063 0.99582 1.01673 0.98369 1.21357 0.94176 0.93658 0.97399 1.21299 1.05409 0.97002 1.02466 1.19658 0.90818 0.86422 0.93691 1.83938 1.49866 1.27435 1.49949 1.21785 1.15001 0.98822 1.12951 0.87642 1.26392 1.00845 0.94682 0.99200 1.70168 1.43049 1.07706 1.33661 0.84696 0.77000 0.77500 0.77806 1.18592 1.20710 1.17737 0.93301 0.92547 0.91651 0.93762 0.92656 0.88364 0.91316 0.75112 0.89373 0.85505 0.91711 0.88117 0.84764 0.82695 0.83052 0.85381 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.14 16 2 C -0.11 -3.45 4.97 30.59 0.15 -3.30 16 3 C -0.12 -4.20 4.19 30.59 0.13 -4.07 16 4 C 0.13 4.77 3.36 44.06 0.15 4.92 16 5 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 6 C 0.53 17.04 6.02 87.79 0.53 17.57 16 7 O -0.58 -21.50 17.19 -3.04 -0.05 -21.56 16 8 N -0.70 -16.83 5.42 -466.26 -2.53 -19.36 16 9 C 0.10 2.17 7.35 86.70 0.64 2.81 16 10 C 0.10 3.15 5.80 86.39 0.50 3.66 16 11 N -0.60 -22.07 2.82 -802.01 -2.26 -24.33 16 12 C 0.59 24.38 4.92 86.70 0.43 24.81 16 13 O -0.56 -25.29 12.02 -4.00 -0.05 -25.34 16 14 C -0.22 -8.59 4.52 -19.99 -0.09 -8.68 16 15 C -0.04 -1.11 9.78 22.52 0.22 -0.89 16 16 C -0.19 -4.80 10.02 22.25 0.22 -4.58 16 17 C -0.05 -1.31 10.03 22.30 0.22 -1.09 16 18 C -0.24 -8.83 9.16 22.36 0.20 -8.62 16 19 C 0.15 6.31 5.19 22.90 0.12 6.43 16 20 O -0.21 -10.77 8.36 -20.13 -0.17 -10.94 16 21 C -0.41 -21.15 9.49 67.93 0.64 -20.51 16 22 H 0.11 4.93 5.21 -2.91 -0.02 4.91 16 23 C -0.01 -0.62 5.49 84.85 0.47 -0.16 16 24 N -0.91 -52.04 13.67 21.62 0.30 -51.74 16 25 Si 1.01 39.78 29.55 68.60 2.03 41.81 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 27 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.41 7.07 -2.39 -0.02 1.39 16 33 H 0.05 1.92 5.19 -2.39 -0.01 1.91 16 34 H 0.10 4.07 5.56 -10.92 -0.06 4.01 16 35 H 0.07 2.39 7.88 -2.39 -0.02 2.38 16 36 H 0.41 7.86 8.80 -92.71 -0.82 7.04 16 37 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.10 3.44 5.12 -2.39 -0.01 3.42 16 41 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.13 4.70 5.64 -2.91 -0.02 4.68 16 45 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -70.88 360.52 2.69 -68.19 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: 0.18 Total: 38.09 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.25 Total: 5.16 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -4.49 Total: -95.43 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.27 Total: -57.83 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -70.88 2.69 -68.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152846676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.159 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds