Wall clock time and date at job start Tue Mar 31 2020 17:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47110 * 88.61792 * 3 2 1 5 5 C 1.46843 * 111.00097 * 45.78668 * 4 3 2 6 6 C 1.53038 * 109.52262 * 185.83832 * 5 4 3 7 7 C 1.53127 * 109.27950 * 300.82511 * 6 5 4 8 8 C 1.50694 * 109.57401 * 177.59097 * 7 6 5 9 9 O 1.21283 * 119.99860 * 249.64884 * 8 7 6 10 10 N 1.34777 * 120.00150 * 69.65172 * 8 7 6 11 11 C 1.46496 * 120.00159 * 3.81926 * 10 8 7 12 12 C 1.50702 * 109.46777 * 83.84480 * 11 10 8 13 13 H 1.07993 * 120.00467 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99758 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00133 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99748 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47394 * 90.00001 * 16 14 12 18 18 H 1.48506 * 109.46853 * 209.99820 * 16 14 12 19 19 H 1.48499 * 109.47421 * 329.99563 * 16 14 12 20 20 C 1.46504 * 119.99978 * 183.81962 * 10 8 7 21 21 C 1.52996 * 109.47034 * 92.03973 * 20 10 8 22 22 F 1.39891 * 109.47189 * 59.99906 * 21 20 10 23 23 F 1.39897 * 109.47156 * 180.02562 * 21 20 10 24 24 F 1.39905 * 109.47023 * 299.99910 * 21 20 10 25 25 C 1.53114 * 109.16074 * 57.65039 * 7 6 5 26 26 C 1.46847 * 110.99799 * 169.99924 * 4 3 2 27 27 H 4.40881 * 5.52243 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46835 * 328.61311 * 3 2 1 29 29 H 1.09003 * 109.46683 * 208.61972 * 3 2 1 30 30 H 1.08991 * 109.46484 * 305.85330 * 5 4 3 31 31 H 1.09005 * 109.46050 * 65.82472 * 5 4 3 32 32 H 1.08994 * 109.50809 * 180.88174 * 6 5 4 33 33 H 1.09003 * 109.50017 * 60.75972 * 6 5 4 34 34 H 1.09003 * 109.51654 * 297.74575 * 7 6 5 35 35 H 1.08995 * 109.47571 * 203.84728 * 11 10 8 36 36 H 1.08997 * 109.47215 * 323.85024 * 11 10 8 37 37 H 0.96996 * 119.99990 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.46971 * 212.04213 * 20 10 8 39 39 H 1.09004 * 109.47157 * 332.04164 * 20 10 8 40 40 H 1.09003 * 109.50372 * 182.40578 * 25 7 6 41 41 H 1.09000 * 109.50642 * 62.28749 * 25 7 6 42 42 H 1.09006 * 109.46359 * 294.17709 * 26 4 3 43 43 H 1.09001 * 109.46407 * 54.15358 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 -0.0325 -1.3846 5 6 2.4093 0.9298 -2.2228 6 6 2.8421 0.7661 -3.6816 7 6 4.3510 1.0024 -3.7909 8 6 4.7943 0.7848 -5.2146 9 8 5.4797 -0.1753 -5.4964 10 7 4.4292 1.6572 -6.1749 11 6 3.6725 2.8609 -5.8218 12 6 4.6248 3.9388 -5.3719 13 1 5.6873 3.7466 -5.3515 14 6 4.1395 5.1708 -4.9874 15 7 4.9705 6.1117 -4.5952 16 14 2.3017 5.5033 -5.0234 17 1 1.7065 5.1369 -3.7132 18 1 2.0648 6.9451 -5.2889 19 1 1.6728 4.6926 -6.0969 20 6 4.7891 1.4017 -7.5719 21 6 3.6568 0.6350 -8.2582 22 9 2.4832 1.3949 -8.2104 23 9 4.0006 0.3906 -9.5920 24 9 3.4515 -0.5820 -7.5994 25 6 5.0815 0.0196 -2.8716 26 6 4.5838 0.2050 -1.4364 27 1 -1.0500 0.0002 -0.0001 28 1 3.0096 -0.8765 0.5352 29 1 3.0088 0.9030 0.4923 30 1 1.3379 0.7481 -2.1393 31 1 2.6328 1.9432 -1.8893 32 1 2.3144 1.4910 -4.3013 33 1 2.6063 -0.2429 -4.0200 34 1 4.5824 2.0240 -3.4894 35 1 3.1154 3.2082 -6.6919 36 1 2.9780 2.6295 -5.0143 37 1 4.6291 6.9782 -4.3244 38 1 4.9491 2.3499 -8.0851 39 1 5.7035 0.8096 -7.6091 40 1 6.1538 0.2113 -2.9126 41 1 4.8810 -1.0011 -3.1973 42 1 4.7971 1.2218 -1.1065 43 1 5.0917 -0.5032 -0.7817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177627440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:02 Heat of formation + Delta-G solvation = -127.341252 kcal Electronic energy + Delta-G solvation = -30413.192066 eV Core-core repulsion = 25852.097050 eV Total energy + Delta-G solvation = -4561.095016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.76633 -47.31943 -47.21750 -40.06117 -38.36405 -35.48481 -34.53276 -32.76133 -32.19052 -30.63831 -29.81852 -27.78858 -26.98632 -24.01263 -23.24067 -22.77526 -22.38484 -19.92904 -18.81332 -18.21193 -18.17748 -18.15558 -17.29204 -16.89328 -16.40013 -16.14385 -15.24641 -15.12531 -14.86099 -14.47676 -14.38660 -14.15374 -14.10529 -13.70667 -13.61802 -13.42021 -13.41283 -13.34263 -13.23515 -12.80927 -12.67260 -12.56687 -12.21851 -12.00996 -11.85769 -11.56733 -11.29735 -11.10104 -10.97515 -10.68550 -10.57497 -10.43542 -10.38929 -10.22827 -10.07163 -9.74123 -9.20630 -8.81733 -8.31130 -8.14286 -6.32613 -4.35364 2.62415 2.76632 2.84778 3.09676 3.17820 3.20905 3.25817 3.42492 4.03955 4.17213 4.18328 4.27664 4.36011 4.59228 4.84657 4.96940 5.03097 5.09209 5.26670 5.32262 5.42902 5.46988 5.54062 5.59420 5.65676 5.78420 5.83918 5.89210 5.96326 6.04434 6.07793 6.14877 6.23927 6.39064 6.65453 6.68802 6.99008 7.02049 7.09678 7.29812 7.52507 7.82425 8.22857 8.62958 8.73340 9.25635 10.79425 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.005287 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.996954 B = 5294.501672 C = 6797.317125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.160 3.840 4 N -0.535 5.535 5 C 0.055 3.945 6 C -0.111 4.111 7 C -0.106 4.106 8 C 0.534 3.466 9 O -0.552 6.552 10 N -0.592 5.592 11 C 0.197 3.803 12 C -0.545 4.545 13 H 0.080 0.920 14 C 0.081 3.919 15 N -0.886 5.886 16 Si 0.863 3.137 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.261 1.261 20 C 0.079 3.921 21 C 0.431 3.569 22 F -0.183 7.183 23 F -0.188 7.188 24 F -0.180 7.180 25 C -0.093 4.093 26 C 0.056 3.944 27 H 0.217 0.783 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.268 0.732 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 -9.630 3.508 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C 0.034 3.966 4 N -0.260 5.260 5 C -0.072 4.072 6 C -0.149 4.149 7 C -0.127 4.127 8 C 0.324 3.676 9 O -0.430 6.430 10 N -0.322 5.322 11 C 0.077 3.923 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.124 4.124 15 N -0.523 5.523 16 Si 0.689 3.311 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.185 1.185 20 C -0.048 4.048 21 C 0.375 3.625 22 F -0.164 7.164 23 F -0.170 7.170 24 F -0.161 7.161 25 C -0.131 4.131 26 C -0.071 4.071 27 H 0.234 0.766 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.860 -10.396 3.244 11.926 hybrid contribution -1.245 1.266 0.111 1.779 sum -6.105 -9.130 3.354 11.484 Atomic orbital electron populations 1.24881 0.95903 1.01464 0.99861 1.22861 0.94307 1.00099 1.00565 1.19104 0.84693 1.01912 0.90932 1.62118 1.04513 1.51671 1.07677 1.22150 0.98526 0.93659 0.92890 1.21725 0.94098 1.02939 0.96089 1.21353 0.96457 1.03251 0.91682 1.20587 0.78580 0.81017 0.87423 1.90620 1.38640 1.30622 1.83164 1.47833 1.56179 1.24349 1.03854 1.20233 0.92473 0.82195 0.97426 1.21313 0.95251 0.95873 1.45895 0.90180 1.24826 0.97595 0.95757 0.94188 1.69875 1.34693 1.04602 1.43156 0.87034 0.86028 0.78514 0.79495 1.19646 1.20704 1.18522 1.22428 0.94803 1.02464 0.85121 1.21588 0.85127 0.78861 0.76962 1.93172 1.51505 1.75597 1.96168 1.93146 1.92156 1.94767 1.36936 1.93196 1.95643 1.46632 1.80656 1.21375 0.99388 1.00092 0.92254 1.22148 0.86806 1.00065 0.98085 0.76642 0.88445 0.92380 0.90268 0.94049 0.89935 0.90976 0.86655 0.94129 0.93797 0.92220 0.85851 0.86105 0.90839 0.90384 0.94109 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 19.01 29.55 0.56 -1.63 16 2 C -0.18 -2.15 11.51 -37.12 -0.43 -2.58 16 3 C 0.16 1.80 5.77 -6.61 -0.04 1.76 16 4 N -0.53 -7.06 4.79 -238.18 -1.14 -8.20 16 5 C 0.06 0.80 5.08 -3.84 -0.02 0.78 16 6 C -0.11 -1.75 5.09 -26.65 -0.14 -1.89 16 7 C -0.11 -1.82 1.77 -91.65 -0.16 -1.99 16 8 C 0.53 10.30 6.50 -10.99 -0.07 10.22 16 9 O -0.55 -11.47 15.29 5.56 0.08 -11.39 16 10 N -0.59 -11.30 2.39 -175.07 -0.42 -11.72 16 11 C 0.20 4.08 3.59 -5.20 -0.02 4.06 16 12 C -0.55 -13.41 9.15 -34.44 -0.32 -13.73 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -24.62 13.96 55.43 0.77 -23.85 16 16 Si 0.86 18.99 27.47 -169.99 -4.67 14.32 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 20 C 0.08 1.31 5.45 -4.04 -0.02 1.29 16 21 C 0.43 7.02 3.29 37.16 0.12 7.14 16 22 F -0.18 -3.12 16.15 2.25 0.04 -3.09 16 23 F -0.19 -2.85 17.32 2.25 0.04 -2.81 16 24 F -0.18 -3.19 16.68 2.25 0.04 -3.15 16 25 C -0.09 -1.40 4.77 -26.65 -0.13 -1.52 16 26 C 0.06 0.72 5.42 -3.83 -0.02 0.70 16 27 H 0.22 1.58 7.80 -54.09 -0.42 1.16 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.08 1.11 6.36 -51.93 -0.33 0.78 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.36 5.36 -51.93 -0.28 1.08 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.12 2.19 7.08 -51.93 -0.37 1.82 16 35 H 0.04 0.85 6.26 -51.93 -0.33 0.52 16 36 H 0.04 0.89 3.69 -51.93 -0.19 0.69 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.12 1.88 8.09 -51.93 -0.42 1.46 16 39 H 0.12 1.93 7.31 -51.93 -0.38 1.55 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -28.84 359.84 -6.28 -35.12 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.67 Total: 4.77 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.77 Total: 4.58 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.79 Total: -43.77 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 0.11 Total: -9.05 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.67 Total: 14.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.84 -6.28 -35.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177627440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.223 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds