Wall clock time and date at job start Tue Mar 31 2020 17:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47110 * 88.61792 * 3 2 1 5 5 C 1.46843 * 111.00097 * 45.78668 * 4 3 2 6 6 C 1.53038 * 109.52262 * 185.83832 * 5 4 3 7 7 C 1.53127 * 109.27950 * 300.82511 * 6 5 4 8 8 C 1.50694 * 109.57401 * 177.59097 * 7 6 5 9 9 O 1.21283 * 119.99860 * 249.64884 * 8 7 6 10 10 N 1.34777 * 120.00150 * 69.65172 * 8 7 6 11 11 C 1.46496 * 120.00159 * 3.81926 * 10 8 7 12 12 C 1.50702 * 109.46777 * 83.84480 * 11 10 8 13 13 H 1.07993 * 120.00467 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99758 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00133 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99748 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47394 * 90.00001 * 16 14 12 18 18 H 1.48506 * 109.46853 * 209.99820 * 16 14 12 19 19 H 1.48499 * 109.47421 * 329.99563 * 16 14 12 20 20 C 1.46504 * 119.99978 * 183.81962 * 10 8 7 21 21 C 1.52996 * 109.47034 * 92.03973 * 20 10 8 22 22 F 1.39891 * 109.47189 * 59.99906 * 21 20 10 23 23 F 1.39897 * 109.47156 * 180.02562 * 21 20 10 24 24 F 1.39905 * 109.47023 * 299.99910 * 21 20 10 25 25 C 1.53114 * 109.16074 * 57.65039 * 7 6 5 26 26 C 1.46847 * 110.99799 * 169.99924 * 4 3 2 27 27 H 4.40881 * 5.52243 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46835 * 328.61311 * 3 2 1 29 29 H 1.09003 * 109.46683 * 208.61972 * 3 2 1 30 30 H 1.08991 * 109.46484 * 305.85330 * 5 4 3 31 31 H 1.09005 * 109.46050 * 65.82472 * 5 4 3 32 32 H 1.08994 * 109.50809 * 180.88174 * 6 5 4 33 33 H 1.09003 * 109.50017 * 60.75972 * 6 5 4 34 34 H 1.09003 * 109.51654 * 297.74575 * 7 6 5 35 35 H 1.08995 * 109.47571 * 203.84728 * 11 10 8 36 36 H 1.08997 * 109.47215 * 323.85024 * 11 10 8 37 37 H 0.96996 * 119.99990 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.46971 * 212.04213 * 20 10 8 39 39 H 1.09004 * 109.47157 * 332.04164 * 20 10 8 40 40 H 1.09003 * 109.50372 * 182.40578 * 25 7 6 41 41 H 1.09000 * 109.50642 * 62.28749 * 25 7 6 42 42 H 1.09006 * 109.46359 * 294.17709 * 26 4 3 43 43 H 1.09001 * 109.46407 * 54.15358 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 -0.0325 -1.3846 5 6 2.4093 0.9298 -2.2228 6 6 2.8421 0.7661 -3.6816 7 6 4.3510 1.0024 -3.7909 8 6 4.7943 0.7848 -5.2146 9 8 5.4797 -0.1753 -5.4964 10 7 4.4292 1.6572 -6.1749 11 6 3.6725 2.8609 -5.8218 12 6 4.6248 3.9388 -5.3719 13 1 5.6873 3.7466 -5.3515 14 6 4.1395 5.1708 -4.9874 15 7 4.9705 6.1117 -4.5952 16 14 2.3017 5.5033 -5.0234 17 1 1.7065 5.1369 -3.7132 18 1 2.0648 6.9451 -5.2889 19 1 1.6728 4.6926 -6.0969 20 6 4.7891 1.4017 -7.5719 21 6 3.6568 0.6350 -8.2582 22 9 2.4832 1.3949 -8.2104 23 9 4.0006 0.3906 -9.5920 24 9 3.4515 -0.5820 -7.5994 25 6 5.0815 0.0196 -2.8716 26 6 4.5838 0.2050 -1.4364 27 1 -1.0500 0.0002 -0.0001 28 1 3.0096 -0.8765 0.5352 29 1 3.0088 0.9030 0.4923 30 1 1.3379 0.7481 -2.1393 31 1 2.6328 1.9432 -1.8893 32 1 2.3144 1.4910 -4.3013 33 1 2.6063 -0.2429 -4.0200 34 1 4.5824 2.0240 -3.4894 35 1 3.1154 3.2082 -6.6919 36 1 2.9780 2.6295 -5.0143 37 1 4.6291 6.9782 -4.3244 38 1 4.9491 2.3499 -8.0851 39 1 5.7035 0.8096 -7.6091 40 1 6.1538 0.2113 -2.9126 41 1 4.8810 -1.0011 -3.1973 42 1 4.7971 1.2218 -1.1065 43 1 5.0917 -0.5032 -0.7817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177627440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:01 Heat of formation + Delta-G solvation = -144.181365 kcal Electronic energy + Delta-G solvation = -30413.922308 eV Core-core repulsion = 25852.097050 eV Total energy + Delta-G solvation = -4561.825258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.09900 -48.62090 -48.58392 -41.48405 -39.56461 -37.09253 -35.62737 -34.64684 -33.24185 -31.79885 -31.30581 -29.40153 -28.12223 -25.28234 -24.73353 -24.12162 -23.75190 -21.20052 -20.22964 -19.56864 -19.55529 -19.07100 -18.97620 -18.41858 -17.91476 -17.39519 -16.56490 -16.27840 -16.14277 -15.95811 -15.70249 -15.49392 -15.43613 -15.03382 -14.92349 -14.78234 -14.75360 -14.72577 -14.47608 -14.40220 -13.90600 -13.82446 -13.65955 -13.36389 -13.24445 -12.96070 -12.87999 -12.51139 -12.41992 -12.10818 -12.02637 -11.72675 -11.69585 -11.54663 -11.28538 -11.05094 -10.81628 -10.67634 -9.76467 -9.32766 -8.31293 -6.38052 1.37101 1.39866 1.42272 1.48453 1.75653 1.76807 1.93576 1.99907 2.32287 2.83159 3.01847 3.02762 3.06561 3.26710 3.46145 3.51396 3.81096 3.82065 4.06756 4.20046 4.27594 4.34161 4.38663 4.48382 4.49425 4.58031 4.59070 4.64420 4.74283 4.82265 4.90328 4.91796 5.08714 5.12358 5.17552 5.35298 5.41775 5.44007 5.99612 6.05981 6.10682 6.37929 6.67225 6.70742 7.09042 7.27462 8.84171 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.005287 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.996954 B = 5294.501672 C = 6797.317125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.216 4.216 3 C 0.159 3.841 4 N -0.540 5.540 5 C 0.062 3.938 6 C -0.104 4.104 7 C -0.104 4.104 8 C 0.529 3.471 9 O -0.569 6.569 10 N -0.597 5.597 11 C 0.207 3.793 12 C -0.537 4.537 13 H 0.038 0.962 14 C 0.029 3.971 15 N -0.936 5.936 16 Si 0.922 3.078 17 H -0.260 1.260 18 H -0.286 1.286 19 H -0.240 1.240 20 C 0.073 3.927 21 C 0.440 3.560 22 F -0.185 7.185 23 F -0.179 7.179 24 F -0.188 7.188 25 C -0.088 4.088 26 C 0.062 3.938 27 H 0.245 0.755 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.268 0.732 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 -10.575 3.928 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C 0.034 3.966 4 N -0.266 5.266 5 C -0.066 4.066 6 C -0.142 4.142 7 C -0.126 4.126 8 C 0.319 3.681 9 O -0.449 6.449 10 N -0.327 5.327 11 C 0.086 3.914 12 C -0.575 4.575 13 H 0.057 0.943 14 C -0.171 4.171 15 N -0.575 5.575 16 Si 0.745 3.255 17 H -0.184 1.184 18 H -0.212 1.212 19 H -0.163 1.163 20 C -0.053 4.053 21 C 0.384 3.616 22 F -0.167 7.167 23 F -0.160 7.160 24 F -0.169 7.169 25 C -0.126 4.126 26 C -0.066 4.066 27 H 0.261 0.739 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.873 -11.369 3.652 13.777 hybrid contribution -0.540 1.517 -0.049 1.611 sum -7.413 -9.851 3.603 12.844 Atomic orbital electron populations 1.25684 0.96807 1.00197 0.98308 1.23247 0.95067 1.01376 1.01987 1.19189 0.84704 1.03074 0.89675 1.62108 1.04449 1.51032 1.08965 1.22044 0.99030 0.93486 0.92066 1.21655 0.92778 1.02512 0.97229 1.21358 0.97835 1.02559 0.90805 1.21000 0.78167 0.80705 0.88222 1.90602 1.39366 1.31334 1.83579 1.47834 1.56086 1.23760 1.05006 1.20043 0.91779 0.81632 0.97957 1.21406 0.93996 0.97018 1.45106 0.94334 1.25607 1.02170 0.95468 0.93846 1.70021 1.37047 1.05285 1.45174 0.86079 0.80508 0.78274 0.80612 1.18415 1.21170 1.16303 1.22600 0.95229 1.03393 0.84077 1.21350 0.84701 0.78384 0.77195 1.93166 1.51643 1.75634 1.96214 1.93167 1.92052 1.94674 1.36137 1.93184 1.95667 1.47138 1.80934 1.21329 0.98969 0.98883 0.93415 1.22124 0.86970 1.00723 0.96756 0.73892 0.86586 0.91821 0.89636 0.95080 0.90516 0.91127 0.88772 0.93296 0.92481 0.92252 0.84565 0.85602 0.91343 0.91079 0.94426 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.65 19.01 74.32 1.41 -2.24 16 2 C -0.22 -4.78 11.51 31.13 0.36 -4.43 16 3 C 0.16 3.26 5.77 84.50 0.49 3.75 16 4 N -0.54 -13.40 4.79 -907.46 -4.35 -17.74 16 5 C 0.06 1.70 5.08 86.33 0.44 2.14 16 6 C -0.10 -3.20 5.09 30.65 0.16 -3.04 16 7 C -0.10 -3.58 1.77 -11.46 -0.02 -3.60 16 8 C 0.53 20.37 6.50 87.65 0.57 20.94 16 9 O -0.57 -23.64 15.29 -3.04 -0.05 -23.69 16 10 N -0.60 -22.56 2.39 -826.17 -1.97 -24.54 16 11 C 0.21 8.39 3.59 85.63 0.31 8.70 16 12 C -0.54 -26.76 9.15 25.60 0.23 -26.53 16 13 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 14 C 0.03 1.49 5.47 84.66 0.46 1.95 16 15 N -0.94 -53.18 13.96 21.45 0.30 -52.88 16 16 Si 0.92 38.29 27.47 68.60 1.88 40.17 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 20 C 0.07 2.37 5.45 86.38 0.47 2.84 16 21 C 0.44 13.67 3.29 71.98 0.24 13.91 16 22 F -0.18 -5.95 16.15 44.97 0.73 -5.22 16 23 F -0.18 -5.10 17.32 44.97 0.78 -4.32 16 24 F -0.19 -6.42 16.68 44.97 0.75 -5.67 16 25 C -0.09 -2.61 4.77 30.64 0.15 -2.46 16 26 C 0.06 1.48 5.42 86.33 0.47 1.95 16 27 H 0.24 2.76 7.80 -4.42 -0.03 2.73 16 28 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.09 2.25 6.36 -2.39 -0.02 2.24 16 31 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 2.42 5.36 -2.39 -0.01 2.41 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.09 3.65 7.08 -2.39 -0.02 3.63 16 35 H 0.05 1.94 6.26 -2.39 -0.01 1.92 16 36 H 0.06 2.22 3.69 -2.39 -0.01 2.21 16 37 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.14 4.02 8.09 -2.39 -0.02 4.01 16 39 H 0.13 3.96 7.31 -2.39 -0.02 3.94 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.22 7.92 -2.39 -0.02 2.20 16 42 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.10 1.99 8.12 -2.39 -0.02 1.97 16 Total: -1.00 -61.97 359.84 4.78 -57.20 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.98 Total: 22.81 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.73 Total: 13.88 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -6.02 Total: -95.16 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 9 Polarization: -17.46 SS G_CDS: 2.26 Total: -15.21 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.88 Total: 40.17 kcal Total: -61.97 4.78 -57.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177627440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.983 kcal (2) G-P(sol) polarization free energy of solvation -61.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds