Wall clock time and date at job start Tue Mar 31 2020 17:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47171 * 2 1 4 4 H 1.08998 * 109.47193 * 305.00516 * 3 2 1 5 5 C 1.50695 * 109.47251 * 185.00032 * 3 2 1 6 6 H 1.08007 * 120.00138 * 240.00052 * 5 3 2 7 7 C 1.37879 * 120.00003 * 60.00316 * 5 3 2 8 8 N 1.31513 * 119.99846 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99927 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47255 * 90.00286 * 9 7 5 11 11 H 1.48501 * 109.47210 * 209.99993 * 9 7 5 12 12 H 1.48497 * 109.47572 * 329.99946 * 9 7 5 13 13 N 1.46506 * 109.46749 * 65.00053 * 3 2 1 14 14 C 1.34777 * 120.00107 * 274.99857 * 13 3 2 15 15 O 1.21276 * 119.99866 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99766 * 180.02562 * 14 13 3 17 17 N 1.46506 * 109.46620 * 179.97438 * 16 14 13 18 18 C 1.40209 * 120.50926 * 270.01766 * 17 16 14 19 19 C 1.38502 * 120.74032 * 15.44179 * 18 17 16 20 20 C 1.38291 * 119.81578 * 180.02562 * 19 18 17 21 21 C 1.38270 * 120.20142 * 0.02562 * 20 19 18 22 22 C 1.38326 * 120.25894 * 359.97438 * 21 20 19 23 23 C 1.38400 * 119.86839 * 359.97438 * 22 21 20 24 24 O 1.35984 * 120.65923 * 180.08737 * 23 22 21 25 25 C 1.42999 * 116.71310 * 147.17515 * 24 23 22 26 26 H 1.09005 * 109.41471 * 166.41768 * 25 24 23 27 27 C 1.52997 * 109.44251 * 286.33314 * 25 24 23 28 28 C 1.35089 * 120.50688 * 90.00255 * 17 16 14 29 29 O 1.21301 * 120.13531 * 1.68600 * 28 17 16 30 30 H 1.08998 * 109.46928 * 300.00134 * 1 2 3 31 31 H 1.08996 * 109.47220 * 59.99573 * 1 2 3 32 32 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47258 * 240.00561 * 2 1 3 34 34 H 1.08996 * 109.47220 * 120.00427 * 2 1 3 35 35 H 0.97003 * 119.99532 * 180.02562 * 8 7 5 36 36 H 0.96995 * 119.99811 * 95.00173 * 13 3 2 37 37 H 1.08999 * 109.47273 * 60.00376 * 16 14 13 38 38 H 1.08988 * 109.47243 * 299.99898 * 16 14 13 39 39 H 1.08001 * 120.09084 * 0.03229 * 19 18 17 40 40 H 1.08000 * 119.89772 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.87678 * 179.97438 * 21 20 19 42 42 H 1.07999 * 120.06311 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47153 * 180.16783 * 27 25 24 44 44 H 1.09001 * 109.46832 * 60.16974 * 27 25 24 45 45 H 1.09004 * 109.47261 * 300.16956 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8814 -1.3818 10 1 6.5549 -0.3501 -0.7604 11 1 6.3829 0.9226 -2.8173 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3396 2.6319 0.4345 16 6 0.0367 3.3385 2.6546 17 7 -1.3219 3.8716 2.5266 18 6 -1.5336 5.1752 2.0557 19 6 -0.5225 5.8677 1.4104 20 6 -0.7521 7.1529 0.9542 21 6 -1.9865 7.7472 1.1410 22 6 -3.0003 7.0608 1.7848 23 6 -2.7783 5.7739 2.2432 24 8 -3.7641 5.0837 2.8766 25 6 -3.7820 3.6668 2.6848 26 1 -4.4480 3.2104 3.4172 27 6 -4.2825 3.3501 1.2742 28 6 -2.3899 3.1146 2.8600 29 8 -2.2297 1.9949 3.2982 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8293 -0.0608 -2.9500 36 1 2.2719 2.1231 1.9978 37 1 0.7281 4.1540 2.8669 38 1 0.0681 2.6145 3.4687 39 1 0.4424 5.4053 1.2638 40 1 0.0355 7.6943 0.4512 41 1 -2.1599 8.7513 0.7830 42 1 -3.9633 7.5279 1.9287 43 1 -4.2991 2.2699 1.1285 44 1 -3.6160 3.8052 0.5415 45 1 -5.2888 3.7494 1.1475 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183803101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:47 Heat of formation + Delta-G solvation = -93.655987 kcal Electronic energy + Delta-G solvation = -29693.207447 eV Core-core repulsion = 25675.429874 eV Total energy + Delta-G solvation = -4017.777573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83670 -40.74754 -39.93351 -38.68489 -37.19224 -36.42304 -34.35643 -33.13335 -32.93337 -31.33185 -30.93501 -29.51484 -28.46311 -25.53956 -24.96725 -24.54120 -23.51782 -22.18639 -21.23473 -20.33828 -20.25524 -19.17809 -18.41848 -17.88711 -17.36344 -17.09719 -16.77100 -16.61987 -16.43163 -16.29536 -15.79663 -15.58663 -15.26392 -15.10260 -14.75644 -14.62442 -14.32216 -14.01008 -13.88289 -13.60470 -13.52598 -13.24440 -13.21338 -13.01581 -12.94496 -12.85136 -12.68047 -12.23428 -12.22274 -12.17422 -12.11110 -11.80516 -11.65558 -11.11579 -11.07388 -10.70786 -10.53973 -9.70308 -9.65516 -8.91382 -8.17692 -6.35393 0.06822 0.28485 1.05826 1.41764 1.44548 1.44870 1.55253 1.70578 2.14471 2.35037 2.58946 2.76846 2.83933 3.12023 3.59019 3.67830 3.77249 3.87366 3.98468 4.01181 4.12608 4.25999 4.32024 4.41016 4.44807 4.48454 4.53762 4.62377 4.68050 4.70650 4.93508 4.98571 5.00528 5.17464 5.23632 5.28574 5.36484 5.49514 5.52981 5.58401 5.67625 5.73269 5.80958 5.87418 6.12192 6.26614 6.51722 6.72094 6.89929 7.30740 7.49370 8.87684 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.003543 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.943780 B = 7901.155629 C = 8887.774791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.283 3.717 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.701 5.701 14 C 0.485 3.515 15 O -0.573 6.573 16 C 0.091 3.909 17 N -0.533 5.533 18 C 0.082 3.918 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.103 4.103 22 C -0.107 4.107 23 C 0.060 3.940 24 O -0.299 6.299 25 C 0.087 3.913 26 H 0.175 0.825 27 C -0.168 4.168 28 C 0.487 3.513 29 O -0.543 6.543 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.405 0.595 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.151 0.849 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 14.923 10.507 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.180 3.820 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.186 1.186 13 N -0.351 5.351 14 C 0.270 3.730 15 O -0.452 6.452 16 C -0.034 4.034 17 N -0.255 5.255 18 C -0.012 4.012 19 C -0.154 4.154 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.125 4.125 23 C 0.014 3.986 24 O -0.214 6.214 25 C 0.028 3.972 26 H 0.192 0.808 27 C -0.225 4.225 28 C 0.277 3.723 29 O -0.420 6.420 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.169 0.831 41 H 0.186 0.814 42 H 0.181 0.819 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.292 14.189 10.057 21.297 hybrid contribution 1.604 -0.934 -0.345 1.888 sum -10.688 13.255 9.712 19.602 Atomic orbital electron populations 1.21627 0.97401 0.98781 0.99799 1.21797 0.93254 0.99645 1.01238 1.18331 0.93744 0.88772 0.81170 0.98257 1.21566 0.91202 1.39045 1.06729 0.90775 1.25769 1.03306 0.94324 0.94989 1.70054 1.37107 1.38320 1.09902 0.85369 0.79080 0.78895 0.77139 1.19907 1.21312 1.18637 1.46212 1.15270 1.55825 1.17833 1.21262 0.82289 0.79292 0.90139 1.90671 1.52101 1.60628 1.41848 1.21618 0.83636 1.01855 0.96316 1.45297 1.06537 1.12431 1.61274 1.18345 0.95917 0.84751 1.02163 1.20829 0.98392 0.96528 0.99611 1.21329 0.98997 0.93504 0.99139 1.21405 0.91537 1.01392 0.97815 1.20896 1.02008 0.91669 0.97974 1.18869 0.85472 0.94365 0.99886 1.86257 1.49019 1.18412 1.67679 1.22999 0.91832 0.79743 1.02643 0.80821 1.22270 1.03816 1.03430 0.93019 1.22158 0.88569 0.85340 0.76281 1.90729 1.86594 1.19658 1.44989 0.94486 0.95621 0.94058 0.90852 0.94285 0.92625 0.76004 0.83880 0.85670 0.86384 0.83110 0.81375 0.81906 0.90689 0.93624 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.52 71.98 0.61 -5.08 16 2 C -0.12 -6.09 5.45 30.60 0.17 -5.93 16 3 C 0.28 14.44 2.24 44.24 0.10 14.54 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -28.47 8.73 25.60 0.22 -28.25 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.87 5.29 84.66 0.45 1.31 16 8 N -0.92 -52.19 11.29 21.45 0.24 -51.95 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 N -0.70 -28.52 5.02 -446.10 -2.24 -30.76 16 14 C 0.49 19.10 6.03 87.66 0.53 19.63 16 15 O -0.57 -27.21 13.57 -3.02 -0.04 -27.25 16 16 C 0.09 2.71 5.26 85.63 0.45 3.16 16 17 N -0.53 -16.51 2.21 -634.32 -1.40 -17.90 16 18 C 0.08 2.28 6.38 38.14 0.24 2.52 16 19 C -0.13 -3.43 9.13 22.35 0.20 -3.22 16 20 C -0.11 -2.14 10.04 22.29 0.22 -1.91 16 21 C -0.10 -1.57 10.04 22.30 0.22 -1.34 16 22 C -0.11 -1.87 10.00 22.33 0.22 -1.65 16 23 C 0.06 1.44 5.85 22.59 0.13 1.57 16 24 O -0.30 -6.95 10.18 -93.37 -0.95 -7.90 16 25 C 0.09 2.08 3.81 29.87 0.11 2.19 16 26 H 0.17 3.16 8.14 -2.38 -0.02 3.14 16 27 C -0.17 -3.87 9.30 71.98 0.67 -3.20 16 28 C 0.49 15.61 6.92 87.63 0.61 16.21 16 29 O -0.54 -20.47 16.75 -3.09 -0.05 -20.52 16 30 H 0.04 1.77 5.64 -2.39 -0.01 1.75 16 31 H 0.02 1.30 7.85 -2.39 -0.02 1.28 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.07 4.12 5.95 -2.39 -0.01 4.11 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.40 13.70 8.54 -92.71 -0.79 12.91 16 37 H 0.14 3.23 7.06 -2.39 -0.02 3.22 16 38 H 0.13 3.52 7.45 -2.39 -0.02 3.51 16 39 H 0.12 3.26 6.47 -2.91 -0.02 3.24 16 40 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.29 7.81 -2.39 -0.02 1.27 16 45 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -73.25 368.14 2.99 -70.27 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.23 Total: 31.89 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.17 Total: 10.57 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.40 Total: -100.62 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -1.04 Total: -55.68 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -73.25 2.99 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183803101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.391 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds