Wall clock time and date at job start Tue Mar 31 2020 17:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21724 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.46255 * 119.99993 * 179.97438 * 14 13 3 17 17 C 1.34983 * 120.00265 * 179.97438 * 16 14 13 18 18 C 1.46998 * 120.00230 * 180.02562 * 17 16 14 19 19 C 1.39973 * 120.11122 * 359.71789 * 18 17 16 20 20 C 1.37669 * 119.88164 * 179.76608 * 19 18 17 21 21 C 1.39023 * 120.11306 * 0.53967 * 20 19 18 22 22 O 1.35734 * 119.88706 * 179.71777 * 21 20 19 23 23 C 1.42908 * 116.99814 * 359.97438 * 22 21 20 24 24 C 1.50696 * 109.47042 * 179.97438 * 23 22 21 25 25 N 1.34780 * 120.00071 * 179.97438 * 24 23 22 26 26 O 1.21287 * 120.00046 * 0.02562 * 24 23 22 27 27 C 1.39023 * 120.22774 * 359.69819 * 21 20 19 28 28 C 1.37661 * 120.11481 * 0.03790 * 27 21 20 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 36 36 H 1.07994 * 120.00096 * 0.02562 * 16 14 13 37 37 H 1.08008 * 119.99507 * 0.02562 * 17 16 14 38 38 H 1.07991 * 120.05947 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.94240 * 180.23166 * 20 19 18 40 40 H 1.09009 * 109.46837 * 300.00000 * 23 22 21 41 41 H 1.09000 * 109.47216 * 59.99942 * 23 22 21 42 42 H 0.97002 * 119.99614 * 0.02562 * 25 24 23 43 43 H 0.96996 * 120.00337 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.94100 * 180.02562 * 27 21 20 45 45 H 1.07999 * 120.05612 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3424 2.6318 -0.4309 16 6 0.0484 3.3188 -2.6164 17 6 -1.1710 3.8862 -2.7319 18 6 -1.5599 4.5434 -3.9879 19 6 -0.6654 4.5875 -5.0636 20 6 -1.0364 5.2000 -6.2394 21 6 -2.2926 5.7840 -6.3556 22 8 -2.6514 6.3917 -7.5150 23 6 -1.6890 6.3934 -8.5714 24 6 -2.2600 7.1065 -9.7699 25 7 -1.5250 7.2320 -10.8927 26 8 -3.3806 7.5683 -9.7239 27 6 -3.1829 5.7473 -5.2884 28 6 -2.8237 5.1325 -4.1102 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 5.8770 0.4826 2.1132 35 1 2.2718 2.1232 -1.9978 36 1 0.7380 3.3474 -3.4469 37 1 -1.8609 3.8572 -1.9013 38 1 0.3123 4.1381 -4.9729 39 1 -0.3484 5.2313 -7.0713 40 1 -0.7860 6.9058 -8.2394 41 1 -1.4451 5.3662 -8.8424 42 1 -0.6287 6.8630 -10.9294 43 1 -1.8926 7.6907 -11.6643 44 1 -4.1578 6.2021 -5.3838 45 1 -3.5159 5.1050 -3.2816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183875470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:12 Heat of formation + Delta-G solvation = -67.911119 kcal Electronic energy + Delta-G solvation = -26634.829559 eV Core-core repulsion = 22618.168367 eV Total energy + Delta-G solvation = -4016.661192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82935 -39.68609 -39.17753 -37.81673 -35.42075 -34.34525 -33.53234 -32.36630 -31.51586 -31.43960 -29.81414 -28.35162 -27.40376 -24.18257 -23.32224 -22.62531 -21.63802 -21.08278 -19.83272 -19.28185 -18.89145 -18.28438 -17.40448 -16.95322 -16.88599 -16.35419 -15.94565 -15.61746 -15.26823 -14.82808 -14.78779 -14.58153 -14.40860 -14.19248 -13.68345 -13.40299 -13.15932 -13.07608 -12.88856 -12.44474 -12.36759 -11.96583 -11.83459 -11.73991 -11.68296 -11.10672 -11.07022 -10.88628 -10.62013 -10.53515 -10.35904 -9.96027 -9.87822 -9.56435 -9.35720 -9.23555 -9.15413 -8.75210 -8.13555 -7.90610 -6.21304 -4.23613 0.51601 1.05808 1.94888 2.02226 2.15309 3.23636 3.28105 3.35727 3.41172 3.50473 3.94234 4.00437 4.10351 4.31789 4.33094 4.42050 4.46602 4.52101 4.78567 4.96497 5.06491 5.12611 5.18235 5.27102 5.58474 5.71053 5.84272 5.98143 5.98549 6.03821 6.04096 6.10044 6.19137 6.35400 6.43180 6.57577 6.60720 6.67789 6.72205 6.86493 6.95429 6.98425 7.29338 7.31888 7.52623 7.59297 8.17137 8.54683 8.76117 8.97349 9.39939 10.90727 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.001803 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.647545 B =15525.060744 C =16250.842634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.241 3.759 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.694 5.694 14 C 0.532 3.468 15 O -0.555 6.555 16 C -0.195 4.195 17 C -0.040 4.040 18 C -0.098 4.098 19 C -0.064 4.064 20 C -0.211 4.211 21 C 0.129 3.871 22 O -0.290 6.290 23 C 0.038 3.962 24 C 0.520 3.480 25 N -0.851 5.851 26 O -0.518 6.518 27 C -0.148 4.148 28 C -0.058 4.058 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.395 0.605 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.404 0.596 43 H 0.409 0.591 44 H 0.135 0.865 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.111 9.734 -23.017 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.319 3.681 15 O -0.436 6.436 16 C -0.216 4.216 17 C -0.060 4.060 18 C -0.098 4.098 19 C -0.082 4.082 20 C -0.229 4.229 21 C 0.084 3.916 22 O -0.202 6.202 23 C -0.041 4.041 24 C 0.303 3.697 25 N -0.417 5.417 26 O -0.392 6.392 27 C -0.166 4.166 28 C -0.076 4.076 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.233 0.767 43 H 0.241 0.759 44 H 0.153 0.847 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.396 9.975 -22.038 27.652 hybrid contribution 0.683 -0.617 -0.130 0.929 sum -12.713 9.358 -22.168 27.214 Atomic orbital electron populations 1.21878 0.96917 0.98986 1.02332 1.22279 0.94394 0.99929 1.01061 1.19158 0.95595 0.88528 0.82955 0.93259 1.21056 0.88637 1.39747 1.07844 0.90219 1.24837 0.94876 0.95158 0.97688 1.69866 1.08690 1.44550 1.29826 0.86897 0.80991 0.79940 0.80877 1.20255 1.22173 1.18435 1.46089 1.14742 1.55397 1.17884 1.18201 0.82698 0.79404 0.87778 1.90779 1.51636 1.60608 1.40607 1.23145 0.97993 1.02170 0.98267 1.22211 0.96172 0.92602 0.94990 1.19036 0.94750 1.01673 0.94349 1.21256 0.99227 0.96121 0.91562 1.21138 0.96321 1.05342 1.00132 1.19200 0.93512 0.93161 0.85713 1.86107 1.40707 1.73067 1.20336 1.22461 0.92614 1.02105 0.86900 1.20072 0.85779 0.79764 0.84085 1.43657 1.20086 1.62042 1.15953 1.90825 1.18825 1.46991 1.82567 1.20362 1.00230 1.04417 0.91597 1.21220 0.95312 0.94415 0.96680 0.92868 0.95031 0.92850 0.92814 0.92330 0.92303 0.77179 0.85881 0.84686 0.84866 0.85270 0.88568 0.88599 0.76746 0.75896 0.84716 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.20 16 3 C 0.24 5.68 1.83 -69.08 -0.13 5.56 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 5 C -0.53 -14.33 9.31 -34.44 -0.32 -14.66 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.88 21.72 24.41 -169.99 -4.15 17.58 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.19 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.69 -13.54 5.02 -56.37 -0.28 -13.82 16 14 C 0.53 9.81 6.30 -13.04 -0.08 9.73 16 15 O -0.55 -12.00 13.36 5.17 0.07 -11.93 16 16 C -0.19 -2.68 9.41 -37.52 -0.35 -3.03 16 17 C -0.04 -0.50 9.45 -37.19 -0.35 -0.85 16 18 C -0.10 -1.04 5.87 -105.05 -0.62 -1.66 16 19 C -0.06 -0.59 9.40 -39.14 -0.37 -0.96 16 20 C -0.21 -1.71 9.01 -39.50 -0.36 -2.07 16 21 C 0.13 1.23 6.70 -39.00 -0.26 0.97 16 22 O -0.29 -2.84 9.66 -38.82 -0.37 -3.22 16 23 C 0.04 0.21 5.21 36.00 0.19 0.40 16 24 C 0.52 3.63 8.18 -10.99 -0.09 3.54 16 25 N -0.85 -2.02 8.87 31.22 0.28 -1.74 16 26 O -0.52 -6.44 17.34 -14.36 -0.25 -6.69 16 27 C -0.15 -1.42 9.97 -39.50 -0.39 -1.81 16 28 C -0.06 -0.56 9.79 -39.14 -0.38 -0.94 16 29 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.05 5.64 -51.93 -0.29 0.76 16 32 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.39 6.72 8.52 -40.82 -0.35 6.37 16 36 H 0.12 1.33 6.07 -52.49 -0.32 1.01 16 37 H 0.14 1.78 7.52 -52.48 -0.39 1.39 16 38 H 0.13 1.05 6.16 -52.49 -0.32 0.72 16 39 H 0.13 0.65 6.27 -52.49 -0.33 0.32 16 40 H 0.10 0.30 7.65 -51.92 -0.40 -0.10 16 41 H 0.10 0.29 7.65 -51.93 -0.40 -0.10 16 42 H 0.40 -0.40 8.83 -40.82 -0.36 -0.76 16 43 H 0.41 0.73 8.93 -40.82 -0.36 0.36 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -36.77 372.20 -7.50 -44.27 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.74 Total: 4.95 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.43 Total: -9.49 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.77 Total: -41.08 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.55 Total: -21.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.15 Total: 17.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.77 -7.50 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183875470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.641 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds