Wall clock time and date at job start Tue Mar 31 2020 17:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21724 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.46255 * 119.99993 * 179.97438 * 14 13 3 17 17 C 1.34983 * 120.00265 * 179.97438 * 16 14 13 18 18 C 1.46998 * 120.00230 * 180.02562 * 17 16 14 19 19 C 1.39973 * 120.11122 * 359.71789 * 18 17 16 20 20 C 1.37669 * 119.88164 * 179.76608 * 19 18 17 21 21 C 1.39023 * 120.11306 * 0.53967 * 20 19 18 22 22 O 1.35734 * 119.88706 * 179.71777 * 21 20 19 23 23 C 1.42908 * 116.99814 * 359.97438 * 22 21 20 24 24 C 1.50696 * 109.47042 * 179.97438 * 23 22 21 25 25 N 1.34780 * 120.00071 * 179.97438 * 24 23 22 26 26 O 1.21287 * 120.00046 * 0.02562 * 24 23 22 27 27 C 1.39023 * 120.22774 * 359.69819 * 21 20 19 28 28 C 1.37661 * 120.11481 * 0.03790 * 27 21 20 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 36 36 H 1.07994 * 120.00096 * 0.02562 * 16 14 13 37 37 H 1.08008 * 119.99507 * 0.02562 * 17 16 14 38 38 H 1.07991 * 120.05947 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.94240 * 180.23166 * 20 19 18 40 40 H 1.09009 * 109.46837 * 300.00000 * 23 22 21 41 41 H 1.09000 * 109.47216 * 59.99942 * 23 22 21 42 42 H 0.97002 * 119.99614 * 0.02562 * 25 24 23 43 43 H 0.96996 * 120.00337 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.94100 * 180.02562 * 27 21 20 45 45 H 1.07999 * 120.05612 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3424 2.6318 -0.4309 16 6 0.0484 3.3188 -2.6164 17 6 -1.1710 3.8862 -2.7319 18 6 -1.5599 4.5434 -3.9879 19 6 -0.6654 4.5875 -5.0636 20 6 -1.0364 5.2000 -6.2394 21 6 -2.2926 5.7840 -6.3556 22 8 -2.6514 6.3917 -7.5150 23 6 -1.6890 6.3934 -8.5714 24 6 -2.2600 7.1065 -9.7699 25 7 -1.5250 7.2320 -10.8927 26 8 -3.3806 7.5683 -9.7239 27 6 -3.1829 5.7473 -5.2884 28 6 -2.8237 5.1325 -4.1102 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 5.8770 0.4826 2.1132 35 1 2.2718 2.1232 -1.9978 36 1 0.7380 3.3474 -3.4469 37 1 -1.8609 3.8572 -1.9013 38 1 0.3123 4.1381 -4.9729 39 1 -0.3484 5.2313 -7.0713 40 1 -0.7860 6.9058 -8.2394 41 1 -1.4451 5.3662 -8.8424 42 1 -0.6287 6.8630 -10.9294 43 1 -1.8926 7.6907 -11.6643 44 1 -4.1578 6.2021 -5.3838 45 1 -3.5159 5.1050 -3.2816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183875470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:10 Heat of formation + Delta-G solvation = -96.068722 kcal Electronic energy + Delta-G solvation = -26636.050564 eV Core-core repulsion = 22618.168367 eV Total energy + Delta-G solvation = -4017.882197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.44611 -40.75489 -40.20261 -38.54878 -37.12310 -34.79858 -34.53518 -34.36447 -33.14302 -32.10922 -30.55337 -29.51776 -28.74709 -25.34080 -24.39234 -23.94476 -22.75302 -21.71598 -21.39103 -20.56522 -19.50134 -19.08031 -18.59953 -17.80944 -17.58084 -17.38224 -17.37699 -16.60747 -16.34394 -16.08301 -15.97128 -15.43903 -15.40540 -15.12519 -14.98095 -14.78939 -14.28309 -14.09916 -13.81449 -13.74026 -13.64409 -13.59368 -13.24578 -12.94414 -12.76258 -12.63712 -12.38869 -12.33949 -11.84570 -11.78697 -11.38002 -11.21873 -11.12355 -10.85376 -10.81481 -10.73780 -10.71368 -10.03049 -9.72920 -8.79257 -8.37115 -6.42028 -0.36124 0.39393 1.06908 1.27492 1.35874 1.45840 1.47540 1.69082 2.27004 2.45262 2.59036 2.84344 2.91929 2.99354 3.68420 3.79012 3.88652 3.90163 4.09402 4.12535 4.24248 4.26537 4.27154 4.33707 4.34760 4.43292 4.52439 4.66399 4.86741 5.01746 5.02477 5.10272 5.13207 5.19503 5.26315 5.29307 5.43244 5.50227 5.55725 5.67159 5.69647 5.72636 5.82844 6.18064 6.26174 6.43389 6.60051 6.96649 7.21615 7.25103 7.53921 8.77911 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.001803 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.647545 B =15525.060744 C =16250.842634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.029 3.971 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.260 1.260 11 H -0.293 1.293 12 H -0.262 1.262 13 N -0.696 5.696 14 C 0.531 3.469 15 O -0.593 6.593 16 C -0.214 4.214 17 C -0.013 4.013 18 C -0.122 4.122 19 C -0.061 4.061 20 C -0.206 4.206 21 C 0.130 3.870 22 O -0.316 6.316 23 C 0.030 3.970 24 C 0.516 3.484 25 N -0.826 5.826 26 O -0.585 6.585 27 C -0.165 4.165 28 C -0.057 4.057 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.270 0.730 35 H 0.407 0.593 36 H 0.156 0.844 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.423 0.577 43 H 0.414 0.586 44 H 0.137 0.863 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 9.437 -25.234 29.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.143 3.857 4 H 0.038 0.962 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.344 5.344 14 C 0.321 3.679 15 O -0.477 6.477 16 C -0.235 4.235 17 C -0.033 4.033 18 C -0.122 4.122 19 C -0.079 4.079 20 C -0.225 4.225 21 C 0.084 3.916 22 O -0.229 6.229 23 C -0.047 4.047 24 C 0.300 3.700 25 N -0.393 5.393 26 O -0.465 6.465 27 C -0.184 4.184 28 C -0.075 4.075 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.173 0.827 37 H 0.141 0.859 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.256 0.744 43 H 0.246 0.754 44 H 0.155 0.845 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.538 9.671 -24.325 29.471 hybrid contribution 0.706 -0.369 0.347 0.869 sum -12.832 9.302 -23.978 28.743 Atomic orbital electron populations 1.21761 0.95263 1.00465 1.01604 1.22199 0.95808 0.98492 1.01010 1.18780 0.93187 0.89680 0.84046 0.96187 1.21300 0.90344 1.38416 1.06951 0.92395 1.25535 0.95728 0.95946 0.99830 1.69971 1.10189 1.46201 1.30831 0.86049 0.79278 0.79961 0.78416 1.18536 1.22082 1.18686 1.45905 1.15760 1.55798 1.16912 1.18865 0.81586 0.78503 0.88910 1.90756 1.52518 1.62003 1.42422 1.22925 0.99403 1.04029 0.97125 1.22272 0.95174 0.90510 0.95339 1.18996 0.95784 1.03294 0.94152 1.21519 0.99550 0.95501 0.91291 1.21461 0.96172 1.04044 1.00786 1.19389 0.93959 0.92625 0.85586 1.86084 1.42695 1.73055 1.21092 1.22826 0.92480 1.04127 0.85304 1.20471 0.85117 0.79089 0.85296 1.43504 1.20494 1.60522 1.14736 1.90802 1.21705 1.50131 1.83823 1.20523 1.00844 1.05013 0.92018 1.21358 0.95269 0.93796 0.97070 0.94578 0.92340 0.92640 0.93915 0.91214 0.92119 0.75754 0.82664 0.85933 0.83136 0.81667 0.85545 0.85487 0.74430 0.75370 0.84474 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.51 71.98 0.61 -4.60 16 2 C -0.14 -5.90 5.11 30.59 0.16 -5.75 16 3 C 0.25 11.72 1.83 44.24 0.08 11.80 16 4 H 0.02 1.08 6.63 -2.38 -0.02 1.06 16 5 C -0.53 -28.87 9.31 25.60 0.24 -28.63 16 6 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 7 C 0.03 1.65 5.45 84.66 0.46 2.12 16 8 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 9 Si 0.94 44.99 24.41 68.60 1.67 46.66 16 10 H -0.26 -11.73 6.83 99.48 0.68 -11.05 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.26 -12.61 6.53 99.48 0.65 -11.96 16 13 N -0.70 -26.83 5.02 -450.48 -2.26 -29.09 16 14 C 0.53 19.30 6.30 86.33 0.54 19.85 16 15 O -0.59 -25.79 13.36 -4.42 -0.06 -25.85 16 16 C -0.21 -5.53 9.41 23.61 0.22 -5.30 16 17 C -0.01 -0.31 9.45 23.82 0.23 -0.08 16 18 C -0.12 -2.35 5.87 -20.14 -0.12 -2.47 16 19 C -0.06 -0.92 9.40 22.56 0.21 -0.71 16 20 C -0.21 -2.56 9.01 22.32 0.20 -2.36 16 21 C 0.13 2.17 6.70 22.65 0.15 2.33 16 22 O -0.32 -5.60 9.66 -71.54 -0.69 -6.29 16 23 C 0.03 0.24 5.21 71.23 0.37 0.61 16 24 C 0.52 6.30 8.18 87.66 0.72 7.02 16 25 N -0.83 -1.83 8.87 -173.53 -1.54 -3.37 16 26 O -0.59 -14.57 17.34 15.98 0.28 -14.29 16 27 C -0.17 -2.98 9.97 22.32 0.22 -2.75 16 28 C -0.06 -1.02 9.79 22.55 0.22 -0.80 16 29 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 2.12 5.64 -2.38 -0.01 2.11 16 32 H 0.04 1.94 3.22 -2.39 -0.01 1.93 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.81 16 34 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.41 13.52 8.52 -92.71 -0.79 12.73 16 36 H 0.16 2.88 6.07 -2.91 -0.02 2.87 16 37 H 0.12 3.19 7.52 -2.91 -0.02 3.17 16 38 H 0.15 1.72 6.16 -2.92 -0.02 1.70 16 39 H 0.17 0.76 6.27 -2.91 -0.02 0.74 16 40 H 0.13 0.22 7.65 -2.38 -0.02 0.20 16 41 H 0.13 0.20 7.65 -2.39 -0.02 0.18 16 42 H 0.42 -2.35 8.83 -92.71 -0.82 -3.17 16 43 H 0.41 0.66 8.93 -92.71 -0.83 -0.17 16 44 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -82.83 372.20 0.77 -82.06 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -1.45 Total: 15.40 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.52 Total: -9.75 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -3.50 Total: -87.93 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.47 Total: -46.43 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -82.83 0.77 -82.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183875470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.014 kcal (2) G-P(sol) polarization free energy of solvation -82.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds